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Sed0002882 (gene) of Chayote v1 genome

Gene IDSed0002882
OrganismSechium edule (Chayote v1)
DescriptionTranscription elongation factor SPT4 homolog
Genome locationLG06:39016017..39025916
RNA-Seq ExpressionSed0002882
SyntenySed0002882
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006397 - mRNA processing (biological process)
GO:0006414 - translational elongation (biological process)
GO:0032786 - positive regulation of DNA-templated transcription, elongation (biological process)
GO:0034243 - regulation of transcription elongation from RNA polymerase II promoter (biological process)
GO:0032044 - DSIF complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008461561.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo]5.9e-6399.14Show/hide
Query:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

XP_012065876.1 transcription elongation factor SPT4 homolog 2 [Jatropha curcas]7.2e-6194.83Show/hide
Query:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M S PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFNGIISVMDP+RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCE+ERVQY PPKRV
Subjt:  NLCEEERVQYAPPKRV

XP_022143259.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia]1.7e-6298.28Show/hide
Query:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

XP_022948256.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata]2.9e-6297.41Show/hide
Query:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        N+CEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

XP_038881174.1 transcription elongation factor SPT4 homolog 2 [Benincasa hispida]7.7e-6399.14Show/hide
Query:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

TrEMBL top hitse value%identityAlignment
A0A0A0L9Q3 Transcription elongation factor SPT4 homolog2.9e-6399.14Show/hide
Query:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

A0A1S3CFH1 Transcription elongation factor SPT4 homolog2.9e-6399.14Show/hide
Query:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

A0A6J1CNB4 Transcription elongation factor SPT4 homolog8.3e-6398.28Show/hide
Query:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        NLCEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

A0A6J1G8V8 Transcription elongation factor SPT4 homolog1.4e-6297.41Show/hide
Query:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        N+CEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

A0A6J1K6X8 Transcription elongation factor SPT4 homolog1.4e-6297.41Show/hide
Query:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        N+CEEERVQYAPPKRV
Subjt:  NLCEEERVQYAPPKRV

SwissProt top hitse value%identityAlignment
P63271 Transcription elongation factor SPT4-A2.4e-1941.35Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEE
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +  
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEE

Query:  RVQY
         V Y
Subjt:  RVQY

Q5RFH5 Transcription elongation factor SPT41.9e-1941.35Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEE
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +  
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEE

Query:  RVQY
         V Y
Subjt:  RVQY

Q6DGQ0 Transcription elongation factor SPT48.4e-2048.89Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALP
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V ECT+ +F+G+I++M P  SW A+W RIG F PG Y + V+  LP
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALP

Q8LCQ3 Transcription elongation factor SPT4 homolog 15.6e-5680.17Show/hide
Query:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q
Subjt:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
         +C++ RVQY PPKR+
Subjt:  NLCEEERVQYAPPKRV

Q94C60 Transcription elongation factor SPT4 homolog 21.3e-5784.48Show/hide
Query:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q
Subjt:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        +LC+EERVQY  PKR+
Subjt:  NLCEEERVQYAPPKRV

Arabidopsis top hitse value%identityAlignment
AT5G08565.1 Transcription initiation Spt4-like protein4.0e-5780.17Show/hide
Query:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q
Subjt:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
         +C++ RVQY PPKR+
Subjt:  NLCEEERVQYAPPKRV

AT5G08565.2 Transcription initiation Spt4-like protein1.2e-4568.1Show/hide
Query:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNG +S            L  G+F PGCYTLAVSEALPE++Q
Subjt:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
         +C++ RVQY PPKR+
Subjt:  NLCEEERVQYAPPKRV

AT5G63670.1 SPT4 homolog 29.4e-5984.48Show/hide
Query:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q
Subjt:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  NLCEEERVQYAPPKRV
        +LC+EERVQY  PKR+
Subjt:  NLCEEERVQYAPPKRV

AT5G63670.2 SPT4 homolog 22.0e-4089.87Show/hide
Query:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRI
        M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRI
Subjt:  MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCCAACCAGCTCAAATTCCTACCAGTTTCGGTCACGAGCTCAGAGCTTGTCTTCGTTGTCGTCTCGTTAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGA
GAATTGTCCCTTCTTCAAGATGGATGAAGACCATGAGCGTGTTGTAGAGTGCACTACTCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTG
CTAGATGGCTGCGAATTGGAAGATTTGTCCCTGGTTGTTACACTCTTGCTGTCTCAGAGGCCCTCCCTGAGGATTTGCAGAATTTATGTGAAGAGGAGCGTGTGCAATAT
GCACCACCAAAACGTGTTTGA
mRNA sequenceShow/hide mRNA sequence
GACAACTAAAGGAGTGAGTGTTTTATCTAGCTTTGTATTTATTAATCAATTACCAAAATTGTTATTCAATCCAACCAACCATTTCTCCAATGATTCAATTTAGTAGGGTT
TAAAATCGACTCATTTCAATTTTTCCCTCAAATTTTCATCTTATTCCTCCTCGATCAGTACTCTCCATTCTCTAGTTTTCTTTCGCCGCCCAAGGCGTGCACCGGACCTC
GCCGACGCTGCTCGCCGGACGTTGCCGCCGGCGGCCATACATCTAAGAAACTTGCAGGGAAGGATCTTAAGTAATGGCAAGCCAACCAGCTCAAATTCCTACCAGTTTCG
GTCACGAGCTCAGAGCTTGTCTTCGTTGTCGTCTCGTTAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGAATTGTCCCTTCTTCAAGATGGATGAAGACCATGAG
CGTGTTGTAGAGTGCACTACTCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGATTTGTCCCTGGTTG
TTACACTCTTGCTGTCTCAGAGGCCCTCCCTGAGGATTTGCAGAATTTATGTGAAGAGGAGCGTGTGCAATATGCACCACCAAAACGTGTTTGACTTGGACCCGTATGTT
ATCTATCTGTAGCTTATCCTGATTTCAAACAACTCCACTTTGCTTTGTTCATGTGGTAGTATTTAATATGCATTGTCTTTTGGTAGAAATGAACACAAGTTTAGTTGCTA
ACACCTTGCATTGTACATCTTACTTTGCTCTCCCTTGCGCTTCTTTAATTCCCCTATTGAAAACACTCACAAGTGGAAGAGACTGACTTTGAGTTGCTTGGAACACTGGT
TTAACCGAACACGGTTCGGTTATTGTTGTTGGTTGGTTAAGGAGAAAACATGATGGTTTAACCAAACACGGTTTGTTTTCAAAAAAAAA
Protein sequenceShow/hide protein sequence
MASQPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQY
APPKRV