; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0002904 (gene) of Chayote v1 genome

Gene IDSed0002904
OrganismSechium edule (Chayote v1)
Descriptionmediator of RNA polymerase II transcription subunit 30
Genome locationLG12:34595187..34596975
RNA-Seq ExpressionSed0002904
SyntenySed0002904
Gene Ontology termsGO:0016592 - mediator complex (cellular component)
InterPro domainsIPR034568 - Mediator of RNA polymerase II transcription subunit 30


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138044.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus]3.8e-8387.37Show/hide
Query:  MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTSG--
        MEEK ++ LALPQ+TQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS    TATSGLTIASPSGPS HSANGVVNGDASSE  SHHTD+SG  
Subjt:  MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTSG--

Query:  ----GGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV
            GGALEEARVRYKNSVLALRAILAAIPNSQKAK +ESG+SGH+SPADQSEIDKLEQHLSNLRKELVVKNLH+KLLIDQLRD+VADVSTWQSPCSV
Subjt:  ----GGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV

XP_008464424.1 PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]2.1e-8185.86Show/hide
Query:  MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS---
        MEEK ++ LALPQ+TQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS    TATSGLTIASP+GPS HSANGVVNGDASSE  SHHTD+S   
Subjt:  MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS---

Query:  ---GGGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV
            GGALEEARVRYKNSVLALRAILAAIPNSQKAK +ESG+S H+SPADQSEIDKLEQHLSNLRKELVVKNLH+KLLIDQLRD+VADVSTWQSPCSV
Subjt:  ---GGGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV

XP_022134927.1 mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]5.3e-7782.56Show/hide
Query:  MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT-STATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS------
        ME+K +S LALPQ+TQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTT STATS L+IASP+GPSPHS NGVVNGDASSE  +HH DTS      
Subjt:  MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT-STATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS------

Query:  GGGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV
         GGALEEARVRY NSVLALRAILAAIP+SQ AK +ESG+SGH+SPADQSEIDKLEQHL NLRKELV KNLH+KLLIDQLRD+VAD+STWQSPCSV
Subjt:  GGGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV

XP_022921424.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata]9.6e-7983.33Show/hide
Query:  MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS---
        MEEK ++ L+LPQ+TQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS    T TSGLTIASP+ PS HS NGVVNGDASSE  +HHTDTS   
Subjt:  MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS---

Query:  ---GGGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV
            GGALEEARVRYKNSVLALRAILAAIPNSQKAK  ESG+SGH+SPADQSEIDKLEQHLSNLRKEL+VKNLH+KLLIDQLR++VADVSTWQSPCSV
Subjt:  ---GGGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV

XP_038879540.1 mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]1.1e-7783.92Show/hide
Query:  MMEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS--
        MMEEK ++ LALPQ+TQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS    TATSGL IASP+GPS HS NGVVNGDASSE  SHHTD+S  
Subjt:  MMEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS--

Query:  ----GGGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV
             GGALEEARVRYKNSVLALRAILAAIPNSQKA  +ESG+SG  SPADQSEIDKLEQHLS+LRKELVVKNLH+KLLIDQLRD+VADVSTWQSPCSV
Subjt:  ----GGGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV

TrEMBL top hitse value%identityAlignment
A0A0A0LNW4 Uncharacterized protein1.8e-8387.37Show/hide
Query:  MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTSG--
        MEEK ++ LALPQ+TQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS    TATSGLTIASPSGPS HSANGVVNGDASSE  SHHTD+SG  
Subjt:  MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTSG--

Query:  ----GGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV
            GGALEEARVRYKNSVLALRAILAAIPNSQKAK +ESG+SGH+SPADQSEIDKLEQHLSNLRKELVVKNLH+KLLIDQLRD+VADVSTWQSPCSV
Subjt:  ----GGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV

A0A1S3CMZ7 mediator of RNA polymerase II transcription subunit 301.0e-8185.86Show/hide
Query:  MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS---
        MEEK ++ LALPQ+TQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS    TATSGLTIASP+GPS HSANGVVNGDASSE  SHHTD+S   
Subjt:  MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS---

Query:  ---GGGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV
            GGALEEARVRYKNSVLALRAILAAIPNSQKAK +ESG+S H+SPADQSEIDKLEQHLSNLRKELVVKNLH+KLLIDQLRD+VADVSTWQSPCSV
Subjt:  ---GGGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV

A0A5A7USU3 Mediator of RNA polymerase II transcription subunit 301.0e-8185.86Show/hide
Query:  MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS---
        MEEK ++ LALPQ+TQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS    TATSGLTIASP+GPS HSANGVVNGDASSE  SHHTD+S   
Subjt:  MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS---

Query:  ---GGGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV
            GGALEEARVRYKNSVLALRAILAAIPNSQKAK +ESG+S H+SPADQSEIDKLEQHLSNLRKELVVKNLH+KLLIDQLRD+VADVSTWQSPCSV
Subjt:  ---GGGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV

A0A6J1E0F5 mediator of RNA polymerase II transcription subunit 304.7e-7983.33Show/hide
Query:  MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS---
        MEEK ++ L+LPQ+TQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS    T TSGLTIASP+ PS HS NGVVNGDASSE  +HHTDTS   
Subjt:  MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS---

Query:  ---GGGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV
            GGALEEARVRYKNSVLALRAILAAIPNSQKAK  ESG+SGH+SPADQSEIDKLEQHLSNLRKEL+VKNLH+KLLIDQLR++VADVSTWQSPCSV
Subjt:  ---GGGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV

A0A6J1JFZ2 mediator of RNA polymerase II transcription subunit 304.7e-7983.33Show/hide
Query:  MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS---
        MEEK ++ L+LPQ+TQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS    T TSGLTIASP+ PS HS NGVVNGDASSE  +HHTDTS   
Subjt:  MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS---

Query:  ---GGGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV
            GGALEEARVRYKNSVLALRAILAAIPNSQKAK  ESG+SGH+SPADQSEIDKLEQHLSNLRKEL+VKNLH+KLLIDQLR++VADVSTWQSPCSV
Subjt:  ---GGGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV

SwissProt top hitse value%identityAlignment
Q9FMV4 Mediator of RNA polymerase II transcription subunit 301.8e-4352.28Show/hide
Query:  MMEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTSGGG---
        M++++ S+   +  +TQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST++T +S  T    +G +  SA+      A+ +G SHH++++GGG   
Subjt:  MMEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTSGGG---

Query:  -----ALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV
              L+EA +RYKNSV +LRA+LAAIPNSQKAK  E   +G  SP  + EI+KLE+   +LR E+  KN+HVK LID+LR+++AD+STWQSPCSV
Subjt:  -----ALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV

Arabidopsis top hitse value%identityAlignment
AT5G63480.1 unknown protein1.3e-4452.28Show/hide
Query:  MMEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTSGGG---
        M++++ S+   +  +TQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST++T +S  T    +G +  SA+      A+ +G SHH++++GGG   
Subjt:  MMEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTSGGG---

Query:  -----ALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV
              L+EA +RYKNSV +LRA+LAAIPNSQKAK  E   +G  SP  + EI+KLE+   +LR E+  KN+HVK LID+LR+++AD+STWQSPCSV
Subjt:  -----ALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGAAGAAAAAGGCAGCAGTGCTTTGGCACTTCCTCAGAGCACTCAAGAGCTTGCAATGGAGGGAATCAAGCATCTGGAGGAAACCATAGAATCGGCTTTCCAGAT
CCTTTACTCCATGAATGACGAGCTCTGCAATCCCACGTTATGGTCTACCACTTCAACCGCTACTTCTGGTTTAACAATTGCCAGCCCTAGTGGTCCTTCTCCACATTCCG
CTAATGGAGTTGTAAACGGCGACGCGAGCTCCGAAGGCAACAGCCACCACACCGACACCAGCGGCGGCGGAGCTCTTGAGGAGGCCCGAGTTCGCTACAAGAACTCCGTC
CTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAACCGTTTGAATCGGGTTCGAGTGGCCATTCATCGCCAGCAGACCAATCTGAAATTGATAA
GTTGGAACAACATCTCTCTAATCTCAGAAAGGAACTTGTGGTCAAGAACTTGCATGTCAAGCTTCTGATAGATCAACTAAGAGATATCGTTGCTGATGTATCTACATGGC
AAAGTCCTTGTTCTGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGAAGAAAAAGGCAGCAGTGCTTTGGCACTTCCTCAGAGCACTCAAGAGCTTGCAATGGAGGGAATCAAGCATCTGGAGGAAACCATAGAATCGGCTTTCCAGAT
CCTTTACTCCATGAATGACGAGCTCTGCAATCCCACGTTATGGTCTACCACTTCAACCGCTACTTCTGGTTTAACAATTGCCAGCCCTAGTGGTCCTTCTCCACATTCCG
CTAATGGAGTTGTAAACGGCGACGCGAGCTCCGAAGGCAACAGCCACCACACCGACACCAGCGGCGGCGGAGCTCTTGAGGAGGCCCGAGTTCGCTACAAGAACTCCGTC
CTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAACCGTTTGAATCGGGTTCGAGTGGCCATTCATCGCCAGCAGACCAATCTGAAATTGATAA
GTTGGAACAACATCTCTCTAATCTCAGAAAGGAACTTGTGGTCAAGAACTTGCATGTCAAGCTTCTGATAGATCAACTAAGAGATATCGTTGCTGATGTATCTACATGGC
AAAGTCCTTGTTCTGTATGA
Protein sequenceShow/hide protein sequence
MMEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTSGGGALEEARVRYKNSV
LALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV