CuGenDBv2

Gene ID	Sed0002907
Organism	Sechium edule (Chayote v1)
Description	cyclic phosphodiesterase-like
Genome location	LG10:1154371..1157791
RNA-Seq Expression	Sed0002907
Synteny	Sed0002907
Gene Ontology terms	GO:0009187 - cyclic nucleotide metabolic process (biological process) GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity (molecular function)
InterPro domains	IPR009097 - Cyclic phosphodiesterase IPR012386 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581386.1 Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. sororia]

4.0e-69

70.83

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Query:  MANPEP--------GKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLH
        MANPE          KN Y+V+ALPP+DV ARI+TLM+SLRSEFGGPQF PHITVVG I LT DDAL+KF+SACEGLKAYQATVD V+TG  +YQCV+L 
Subjt:  MANPEP--------GKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLH

Query:  FYPTTEVMETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS
         +PTT+V+ETSSHCC +FGY +STPYMPHLSLLY N+SDE+K+QAKE   KLDE I  LSF +TRLALYKT  GD T LKSWEKIAE  LPS
Subjt:  FYPTTEVMETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS

KAG7034670.1 Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.4e-68

70.31

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Query:  MANPEP--------GKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLH
        MANPE          KN Y+V+ALPP+DV ARI+TLM+SLRSEFGGPQF PHITVVG I LT DDAL+KF+SACEGLKAYQATVD V+TG  +YQCV+L 
Subjt:  MANPEP--------GKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLH

Query:  FYPTTEVMETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS
         +PTT+V+ETSSHCC +FG  +STPYMPHLSLLY N+SDE+K+QAKE   KLDE I  LSF +TRLALYKT  GD T LKSWEKIAE  LPS
Subjt:  FYPTTEVMETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS

XP_022978766.1 cyclic phosphodiesterase-like [Cucurbita maxima]

1.8e-69

71.35

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Query:  MANPEP--------GKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLH
        MANPE          KN Y+V+ALPP+DV ARI+TLM+SLRSEFGGPQF PHITVVG I LT DDAL+KF+SACEGLKAYQATVD V+TG  +YQCV+L 
Subjt:  MANPEP--------GKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLH

Query:  FYPTTEVMETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS
         +PTT+V+ETSSHCC +FGY++STPYMPHLSLLY N+SDE+K+QAKE   KLDE I  LSF VTRLALYKT  GD T LKSWEKIAE  LPS
Subjt:  FYPTTEVMETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS

XP_023522563.1 cyclic phosphodiesterase-like [Cucurbita pepo subsp. pepo]

5.2e-69

70.83

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Query:  MANPEP--------GKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLH
        MANPE          KN Y+V+ALPP+DV ARI+TLM+SLRSEFGGPQF PHITVVG I LT DDAL+KF+SACEGLKAYQATVD V+TG  +YQCV+L 
Subjt:  MANPEP--------GKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLH

Query:  FYPTTEVMETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS
         +PT EV+ETSSHCC +FGY++STPYMPHLSLLY N+SDE+K+QAKE   KLDE I  LSF +TRLALYKT  GD T LKSWEKIAE  LPS
Subjt:  FYPTTEVMETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS

XP_023543945.1 cyclic phosphodiesterase-like isoform X2 [Cucurbita pepo subsp. pepo]

2.3e-69

70.83

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Query:  MANPEP--------GKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLH
        MANPE          KN Y+V+ALPP+DV ARI+TLM+SLRSEFGGPQF PHITVVG I LT DDAL+KF+SACEGLKAYQATVD V+TG  +YQCV+L 
Subjt:  MANPEP--------GKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLH

Query:  FYPTTEVMETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS
         +PTT+V+ETSSHCC +FGY++STPYMPHLSLLY N+SDE+K+QAKE   KLDE I  LSF +TRLALYKT  GD T LKSWEKIAE  LPS
Subjt:  FYPTTEVMETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS

TrEMBL top hits

e value

%identity

Alignment

A0A172WY69 Cyclic phosphodiesterase-like protein 1

1.6e-63

66.3

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Query:  MANPEPGKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLHFYPTTEVM
        +A+P+  KN Y+V+A+PPDDVAAR++ LM+ LR+EFGGPQF PHITVVG I LT DDA+ KF+SACEGLKAY ATV+RVATG  +YQCVYL  +PT +V+
Subjt:  MANPEPGKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLHFYPTTEVM

Query:  ETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS
        ETS+HC  +FGY+ STPYMPHLSLLYG+LS+++K++A+E  N LDE+I+ LSF VTRLALYKT   D T LKSWEKI E  L S
Subjt:  ETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS

A0A1S3AYZ1 cyclic phosphodiesterase-like

9.2e-64

63.54

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Query:  MANPEPGK--------NTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLH
        M NPE           N Y+V+ALPP+DV+ARI+ LM+SLRSEFGGPQF PHITVVG I LT +DAL+KF +AC+G+KAYQATVD V+TG  +YQCV+L 
Subjt:  MANPEPGK--------NTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLH

Query:  FYPTTEVMETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS
         +PTTEV+ETSSH C++FG+++STPYMPH+SLLY ++SDEKK+QAKE  +KLDE +  L F +TRLAL+KT   D T LKSWEKI EH L S
Subjt:  FYPTTEVMETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS

A0A6J1EEQ8 cyclic phosphodiesterase-like

7.1e-64

66.32

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Query:  MANP-----EPGK-NTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLHFY
        MANP     EP +   Y+V+ALPP+DVA +I +LM SLRSEFGGP+F PHITVVG I LTP DAL+KF+SACEG+KAYQATVD+V+ G  +YQCV+L  +
Subjt:  MANP-----EPGK-NTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLHFY

Query:  PTTEVMETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS
        PTTEV++ SSHCC +FGY +STPYMPHLSLLY N+SDE K++AKE  +KL+E +  L   VTRLALYKT  GD T LKSWEKIAEH LPS
Subjt:  PTTEVMETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS

A0A6J1EGC1 cyclic phosphodiesterase-like

1.1e-67

70.31

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Query:  MANPEP--------GKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLH
        MANPE          KN Y+V+ALPP+DV ARI+TLM+SLRSEFGGPQF PHITVVG I LT DDAL+KF+SACEGLKAYQATVD V+TG  +YQCV+L 
Subjt:  MANPEP--------GKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLH

Query:  FYPTTEVMETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS
         +PTT+V+ETSSHCC +FGY+ +TPYMPHLSLLY N+SDE+K+QAKE   KLDE I  LSF +TRLALYKT  GD T LKSWEKIAE  LPS
Subjt:  FYPTTEVMETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS

A0A6J1INY2 cyclic phosphodiesterase-like

8.6e-70

71.35

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Query:  MANPEP--------GKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLH
        MANPE          KN Y+V+ALPP+DV ARI+TLM+SLRSEFGGPQF PHITVVG I LT DDAL+KF+SACEGLKAYQATVD V+TG  +YQCV+L 
Subjt:  MANPEP--------GKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLH

Query:  FYPTTEVMETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS
         +PTT+V+ETSSHCC +FGY++STPYMPHLSLLY N+SDE+K+QAKE   KLDE I  LSF VTRLALYKT  GD T LKSWEKIAE  LPS
Subjt:  FYPTTEVMETSSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS

SwissProt top hits

e value

%identity

Alignment

O04147 Cyclic phosphodiesterase

4.1e-45

50.57

Show/hide

Query:  EPGKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLHFYPTTEVMETSS
        E  K+ Y+V+ALP ++   R + LM++LRSEF GP+F+PH+TV    +LT D+A   F+SAC+GLKAY ATVDRV+TG  ++QCV+L    T EVME   
Subjt:  EPGKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLHFYPTTEVMETSS

Query:  HCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIA
        HC  +F    +TPYMPHLSLLY  L++E+K+ A+E    LD ++  LSF + RLAL KT   D T L++WE +A
Subjt:  HCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIA

Arabidopsis top hits

e value

%identity

Alignment

AT4G18930.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein

2.9e-46

50.57

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Query:  EPGKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLHFYPTTEVMETSS
        E  K+ Y+V+ALP ++   R + LM++LRSEF GP+F+PH+TV    +LT D+A   F+SAC+GLKAY ATVDRV+TG  ++QCV+L    T EVME   
Subjt:  EPGKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLHFYPTTEVMETSS

Query:  HCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIA
        HC  +F    +TPYMPHLSLLY  L++E+K+ A+E    LD ++  LSF + RLAL KT   D T L++WE +A
Subjt:  HCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIA

AT4G18940.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein

7.8e-39

44.51

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Query:  EPGKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPI--HLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLHFYPTTEVMET
        E  K  Y ++A+P DDV  R+Q LM+ LRSEFGGP F PH+T+VGP    LT  +A   F+SACEG K Y ATVD+V+ G  Y+QC+Y+    T EVM  
Subjt:  EPGKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPI--HLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLHFYPTTEVMET

Query:  SSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS
        + H   +F       Y+PH+S+LYG+L++ +K++A E    LD ++  L+F + R+AL+ T    G    SW K+ EH L S
Subjt:  SSHCCQYFGYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCAAACCCAGAACCCGGGAAGAACACGTATACGGTGTTCGCGCTTCCTCCCGATGATGTTGCCGCCAGAATCCAGACTCTGATGGACAGCCTGAGATCCGAGTTCGG
CGGCCCCCAGTTCATTCCTCATATCACTGTCGTCGGCCCAATTCATCTCACCCCCGACGACGCCCTCGACAAATTCCAATCGGCTTGCGAGGGGCTTAAGGCTTACCAAG
CCACCGTGGATCGTGTAGCTACTGGAGTCTTGTATTATCAGTGCGTTTATCTTCATTTTTATCCCACAACTGAGGTGATGGAGACTAGTTCTCATTGCTGTCAATATTTT
GGTTATGAAGACTCTACACCTTACATGCCGCATTTGAGTCTACTGTATGGCAACCTATCAGATGAAAAAAAGGAGCAGGCAAAAGAAACGGTAAACAAACTCGATGAAAC
GATTGCCGATCTGAGCTTCTCGGTCACTCGACTTGCACTGTATAAAACCGGCAATGGAGATGGAACGCCTCTAAAGTCGTGGGAGAAAATTGCAGAACACCATCTTCCTT
CTTGTTAG

mRNA sequence

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GGCTTTAGCATCCATTCCTCCCATTGCCATATAAACCCCAATGGGAATGTGAGCTCAATTATTTTCACTCCATAATTTCCATTATTGCTCCAACAATGGCAAACCCAGAA
CCCGGGAAGAACACGTATACGGTGTTCGCGCTTCCTCCCGATGATGTTGCCGCCAGAATCCAGACTCTGATGGACAGCCTGAGATCCGAGTTCGGCGGCCCCCAGTTCAT
TCCTCATATCACTGTCGTCGGCCCAATTCATCTCACCCCCGACGACGCCCTCGACAAATTCCAATCGGCTTGCGAGGGGCTTAAGGCTTACCAAGCCACCGTGGATCGTG
TAGCTACTGGAGTCTTGTATTATCAGTGCGTTTATCTTCATTTTTATCCCACAACTGAGGTGATGGAGACTAGTTCTCATTGCTGTCAATATTTTGGTTATGAAGACTCT
ACACCTTACATGCCGCATTTGAGTCTACTGTATGGCAACCTATCAGATGAAAAAAAGGAGCAGGCAAAAGAAACGGTAAACAAACTCGATGAAACGATTGCCGATCTGAG
CTTCTCGGTCACTCGACTTGCACTGTATAAAACCGGCAATGGAGATGGAACGCCTCTAAAGTCGTGGGAGAAAATTGCAGAACACCATCTTCCTTCTTGTTAGCTTCTGT
TGTTATCTATGGCATGCCCCCATTTAAAGAATCTTCTCATGTGTCGTACGTTGTTATGGTTTTCTTTACTTTAGTGAAGGTCGGCCAAAGGCCCTTGTGTGAAAGCTTAT
CAAGCCTTATATTTAGGTTGTTTTGGACCTCTTTTGTTATCTAAAAAACTACCTTTCGAATATATATATTGGCAATCAAAGTGCAATAATAATATGTACTTTATTTTAGT
ATCA

Protein sequence

Show/hide protein sequence

MANPEPGKNTYTVFALPPDDVAARIQTLMDSLRSEFGGPQFIPHITVVGPIHLTPDDALDKFQSACEGLKAYQATVDRVATGVLYYQCVYLHFYPTTEVMETSSHCCQYF
GYEDSTPYMPHLSLLYGNLSDEKKEQAKETVNKLDETIADLSFSVTRLALYKTGNGDGTPLKSWEKIAEHHLPSC

Sed0002907 (gene) of Chayote v1 genome