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Sed0002910 (gene) of Chayote v1 genome

Gene IDSed0002910
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG02:44458914..44459330
RNA-Seq ExpressionSed0002910
SyntenySed0002910
Gene Ontology termsGO:0009059 - macromolecule biosynthetic process (biological process)
GO:0010467 - gene expression (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044271 - cellular nitrogen compound biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3622233.1 hypothetical protein FXO38_31400 [Capsicum annuum]3.0e-3767.91Show/hide
Query:  MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVLANVH
        +   KF++EKFDGR+NFG+WQVQVKDVLIQSGLHKALK RP+   SEK + D   +ESS    K S+KS +SD+EWEE+D++ AS IRL LAKNVLANV 
Subjt:  MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVLANVH

Query:  GISTAKELWEKLETMYQTKSISYRLYLKEQFYTL
        G+ST KELWEKLE +YQTKSIS RLYLKEQF+ L
Subjt:  GISTAKELWEKLETMYQTKSISYRLYLKEQFYTL

KAF5463231.1 hypothetical protein F2P56_019161 [Juglans regia]1.9e-3664.66Show/hide
Query:  SSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVLANVHG
        +S++++VEKFDGR+NFGLWQVQVKDVLIQSGLHKALKGRP    + + S D   T+ +        +S MSD++WE++DLR AS IRL LAKNVLAN+HG
Subjt:  SSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVLANVHG

Query:  ISTAKELWEKLETMYQTKSISYRLYLKEQFYTL
        ISTAK+LWEKLE +YQTK +S R+YLKEQF+TL
Subjt:  ISTAKELWEKLETMYQTKSISYRLYLKEQFYTL

KAF7802225.1 cytochrome p450 [Senna tora]4.6e-3867.39Show/hide
Query:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVL
        M+ F S+VKFDVEKFDGR+NFGLWQVQVKDVLIQSGLHKAL+G+ S  DSEKS                  +SSMSD +WEE+DLR AS IRL+LAKNVL
Subjt:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVL

Query:  ANVHGISTAKELWEKLETMYQTKSISYRLYLKEQFYTL
        ANV GISTAKELW+KLE +YQ K IS  L LKEQF+TL
Subjt:  ANVHGISTAKELWEKLETMYQTKSISYRLYLKEQFYTL

KAF7810708.1 cytochrome p450 [Senna tora]1.5e-3665.94Show/hide
Query:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVL
        M+ F S++KFDVEKFDGR+NFG WQVQVKDVLIQSGL KAL+G+ S  DSEKS                  +SSMSD +WEE+DLR AS IRL LAKNVL
Subjt:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVL

Query:  ANVHGISTAKELWEKLETMYQTKSISYRLYLKEQFYTL
        ANV GISTAKELW+KLE +YQ K IS RL LKEQF+TL
Subjt:  ANVHGISTAKELWEKLETMYQTKSISYRLYLKEQFYTL

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]1.9e-4778.26Show/hide
Query:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVL
        M+ FMS VK DVEKFDG +NFGLWQVQVKDVLIQS LHKALKGRPS G SEK S DGG  ESSGGS +GSKKSSMS ++WEEMDLR AS IR +LAKN+L
Subjt:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVL

Query:  ANVHGISTAKELWEKLETMYQTKSISYRLYLKEQFYTL
        ANVH ISTAKELWEKLE +YQ K IS RLYLKEQF+TL
Subjt:  ANVHGISTAKELWEKLETMYQTKSISYRLYLKEQFYTL

TrEMBL top hitse value%identityAlignment
A0A2G2YJH4 Uncharacterized protein1.8e-3563.7Show/hide
Query:  FMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVLANV
        +M   KF++EKFDGR+NFGLWQVQVKDVLIQSGLHKALK RP+ G  +K S    S+E        S+KS +SD+EWEE+D+++ S IRL LAK VL NV
Subjt:  FMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVLANV

Query:  HGISTAKELWEKLETMYQTKSISYRLYLKEQFYTL
         G+ST K+LWEKLE +YQTKSIS RLYLKEQF+ L
Subjt:  HGISTAKELWEKLETMYQTKSISYRLYLKEQFYTL

A0A6A3BK59 CCHC-type domain-containing protein1.8e-3262.12Show/hide
Query:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVLANVHGI
        S +FD+EKFDGR+NFGLWQVQVKD+LIQSGL+KALKG+P+      S  +G   +    S     KS MS++EWEE+D+R AS IRL LAKNVLANV   
Subjt:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVLANVHGI

Query:  STAKELWEKLETMYQTKSISYRLYLKEQFYTL
        S+ KELWEKLE MYQ KS+S RLYLKE+F+ L
Subjt:  STAKELWEKLETMYQTKSISYRLYLKEQFYTL

A0A6A3CWI3 CCHC-type domain-containing protein1.8e-3262.12Show/hide
Query:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVLANVHGI
        S +FD+EKFDGR+NFGLWQVQVKD+LIQSGL+KALKG+P+      S  +G   +    S     KS MS++EWEE+D+R AS IRL LAKNVLANV   
Subjt:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVLANVHGI

Query:  STAKELWEKLETMYQTKSISYRLYLKEQFYTL
        S+ KELWEKLE MYQ KS+S RLYLKE+F+ L
Subjt:  STAKELWEKLETMYQTKSISYRLYLKEQFYTL

A0A6A3DA47 CCHC-type domain-containing protein4.1e-3262.12Show/hide
Query:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVLANVHGI
        S +FD+EKFDGR+NFGLWQVQVKD+LIQSGL+KALKG+P+      S  +G   +    S     KS MS++EWEE+D+R AS IRL LAKNVLANV   
Subjt:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVLANVHGI

Query:  STAKELWEKLETMYQTKSISYRLYLKEQFYTL
        S+ KELWEKLE MYQ KS+S RLYLKE+F+ L
Subjt:  STAKELWEKLETMYQTKSISYRLYLKEQFYTL

A0A6J1CG82 uncharacterized protein LOC1110105219.0e-4878.26Show/hide
Query:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVL
        M+ FMS VK DVEKFDG +NFGLWQVQVKDVLIQS LHKALKGRPS G SEK S DGG  ESSGGS +GSKKSSMS ++WEEMDLR AS IR +LAKN+L
Subjt:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVL

Query:  ANVHGISTAKELWEKLETMYQTKSISYRLYLKEQFYTL
        ANVH ISTAKELWEKLE +YQ K IS RLYLKEQF+TL
Subjt:  ANVHGISTAKELWEKLETMYQTKSISYRLYLKEQFYTL

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-1635.07Show/hide
Query:  MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVLANVH
        MS VK++V KF+G   F  WQ +++D+LIQ GLHK L                             K  +M  ++W ++D R AS IRL+L+ +V+ N+ 
Subjt:  MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVLANVH

Query:  GISTAKELWEKLETMYQTKSISYRLYLKEQFYTL
           TA+ +W +LE++Y +K+++ +LYLK+Q Y L
Subjt:  GISTAKELWEKLETMYQTKSISYRLYLKEQFYTL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGATGTGGAGAAATTTGATGGAAGGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGTTGATACAATCTGGATT
ACACAAGGCTTTGAAGGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAAGCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGGAAAGGTTCTAAGAAGTCCA
GCATGAGTGATGACGAATGGGAGGAAATGGATTTGAGAATTGCAAGTGTCATTAGATTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATGGAATATCAACAGCCAAA
GAGCTTTGGGAGAAGCTTGAAACGATGTATCAGACAAAGAGCATTTCATATCGGTTGTACTTGAAGGAGCAATTTTACACATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGATGTGGAGAAATTTGATGGAAGGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGTTGATACAATCTGGATT
ACACAAGGCTTTGAAGGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAAGCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGGAAAGGTTCTAAGAAGTCCA
GCATGAGTGATGACGAATGGGAGGAAATGGATTTGAGAATTGCAAGTGTCATTAGATTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATGGAATATCAACAGCCAAA
GAGCTTTGGGAGAAGCTTGAAACGATGTATCAGACAAAGAGCATTTCATATCGGTTGTACTTGAAGGAGCAATTTTACACATTGTGA
Protein sequenceShow/hide protein sequence
MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSRKGSKKSSMSDDEWEEMDLRIASVIRLNLAKNVLANVHGISTAK
ELWEKLETMYQTKSISYRLYLKEQFYTL