| GenBank top hits | e value | %identity | Alignment |
|---|
| XP_004154029.1 RNA polymerase sigma factor sigB [Cucumis sativus] | 1.5e-268 | 87.39 | Show/hide |
Query: MSCLVPQFKCHPETFSIQFKTIAVTS---TFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRSYLSSVES
MSCL+PQFKCHPETFSIQFKT A S +FLPT S ++KVRDPHSLRTQCILSAASPPTSTGTATT +VDRLKLPPFDT TDSVSVERLRSYL +VES
Subjt: MSCLVPQFKCHPETFSIQFKTIAVTS---TFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRSYLSSVES
Query: SLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASEHSTGESD
SLASTLLTSE+A+IAAAAAEAVTLAKAAVKVA+DAALL N+ NSSR GTKSQ SPK D L FKW QFMESERADIIGEPVGVN R +EGDA E ST ESD
Subjt: SLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASEHSTGESD
Query: DIEPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEGIQDLLK
D+EPTSEELE+LQD V+S RQTERKA+RTRAAEKT TSV+S KSGSSSRKKRNSVQEVDYSDPLRYLRATT+ SRLLTATEELELSEGIQDLLK
Subjt: DIEPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEGIQDLLK
Query: LEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
LE+LQ EL ERYGNEPTFAQWAAAAG+NQR LRKRLNYGT CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt: LEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Query: WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAESAED
WIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL ENGRHP+D+EIAEAAGLSMKRL AVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAE+ ED
Subjt: WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAESAED
Query: QLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
LIKQFMKQDLEKVLDSLN RE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRER+RQIESCAFRKLKNKKRTKHLQQY++
Subjt: QLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
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| XP_008460092.1 PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo] | 1.6e-270 | 87.91 | Show/hide |
Query: MSCLVPQFKCHPETFSIQFKTIAVTS---TFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRSYLSSVES
MSCL+PQFKCHPETFSIQFKT A S +F+PT S ++KVRDPHSLRTQCILSAASPPTSTGTATT NVDRLKLPPFDT TDSVSVERLRSYL +VES
Subjt: MSCLVPQFKCHPETFSIQFKTIAVTS---TFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRSYLSSVES
Query: SLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASEHSTGESD
SLASTLLTSE+ATIAAAAAEAVTLAKAAVKVA+DAALL N+ NSSR GTKSQ SPK D L FKW QFMESERADIIGEPVGVN R +EGDA E ST ESD
Subjt: SLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASEHSTGESD
Query: DIEPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEGIQDLLK
D+EPTS+ELE+LQD V+S RQTERKA+RTRAAEKT TSVV KSGSSSRKKR+S+QEVDYSDPLRYLRATTS SRLLTATEELELSEGIQDLLK
Subjt: DIEPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEGIQDLLK
Query: LEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
LE+LQ ELAERYGNEPTFAQWAAAAG+NQR LRKRLNYGT CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt: LEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Query: WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAESAED
WIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL SENGRHP+D+EIAEAAGLSMKRL AVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAE+AED
Subjt: WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAESAED
Query: QLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
LIKQFMKQDLEKVLDSLN RE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRER+RQIESCAFRKLKNKKRTKHLQQYL+
Subjt: QLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
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| XP_022155781.1 RNA polymerase sigma factor sigB [Momordica charantia] | 1.9e-271 | 87.52 | Show/hide |
Query: MSCLVPQFKCHPETFSIQFKTIAVTST----------FLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRS
MSCL+PQFKCHPETFSIQFKT A+T T FLPT S +KVRDPHSLRTQCILSAASP TSTGTATTFNV+RLKLPP D TDS+S ERLRS
Subjt: MSCLVPQFKCHPETFSIQFKTIAVTST----------FLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRS
Query: YLSSVESSLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASE
YLS+VESS ASTLLTSE+ATIAAAAAEAVTLAKAAVKVAKDAALLVN+SNSS+TG KSQ S KSD L FKWDQFMESERADIIG PVGVNNR EGDA +
Subjt: YLSSVESSLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASE
Query: HSTGESDDIEPTSEELEILQD-----AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEG
H T ESD +PT+EELE+LQD AVRS RQTER+AKRTRAAEK +TSVVS+KSGSSSRKKRNSVQEVDYSDPLRYLRATTS SRLLTATEELELSEG
Subjt: HSTGESDDIEPTSEELEILQD-----AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEG
Query: IQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF
IQDLLKLE+LQ EL ERYG EPTFAQWAAAAG+NQR LRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF
Subjt: IQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF
Query: STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPE
STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP+DEEIAEAAGLSMKRL AVLMTPKAPRSLEQKIGINQNLKPSEVISDPE
Subjt: STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPE
Query: AESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
AE++ED LIKQFMKQDLEKVLDSLN RERQVIRWRFGMEDGRMKTLQEIGEIMGVSRER+RQIESCAFRKLKNKKRTKHLQQYL+
Subjt: AESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
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| XP_023515004.1 RNA polymerase sigma factor sigB [Cucurbita pepo subsp. pepo] | 1.7e-264 | 84.86 | Show/hide |
Query: MSCLVPQFKCHPETFSIQFKTIAVT------------STFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERL
MSCL+PQFKCHPETFSIQFKT A+T TFLPT S + KVRDPH LRTQCILSAASPPTSTGTATTFNVDRLKLPPFDT TDSVS ERL
Subjt: MSCLVPQFKCHPETFSIQFKTIAVT------------STFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERL
Query: RSYLSSVESSLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDA
RSYL +VESSLASTLLTSE+ATIAAAAAEAV LAKAAVK A DAALLVN+SNS+R+ TKSQ S +S+ L FKWDQFMESERADIIGEPVGVNNR VEGDA
Subjt: RSYLSSVESSLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDA
Query: SEHSTGESDDIEPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELEL
E ST ESDD+EPTSEELE+L+D AVRS RQTERKA+RTRA+EK +TSVVSLKSGSSSRKKRNS QEVDY+DPLRYLRATTSAS+LLTA++ELEL
Subjt: SEHSTGESDDIEPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELEL
Query: SEGIQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG
SEGIQDLLKLE+L+ ELA RYGNEPTFAQWAAAAG+NQR LRKRLNYGTFCKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKG
Subjt: SEGIQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG
Query: FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVIS
FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY+VKEARKQLY+ NGR PNDEEIA AAGLSMKRL VLMTPKAPRSLEQK GINQNLKPSEVIS
Subjt: FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVIS
Query: DPEAESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
DPEA +AED LIKQFMKQ+LEKVLDSLN RERQ+IRWR+GMEDGRMKTLQEIGE+MGVSRER+RQIE CAFRKLKNKKRTKHLQQYL+
Subjt: DPEAESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
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| XP_038875580.1 RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida] | 6.5e-272 | 88.28 | Show/hide |
Query: MSCLVPQFKCHPETFSIQFKTIAVTS----TFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRSYLSSVE
MSCL+PQFKCHPETFSIQFKT A + TFLPT S ++KVRDPHSLRTQCILSAASPPTSTGTATT NVDRL LPPFDT TDSVSVERLRSYL +VE
Subjt: MSCLVPQFKCHPETFSIQFKTIAVTS----TFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRSYLSSVE
Query: SSLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASEHSTGES
SSLASTLLTSE+ATIAAAAAEAV LAKAAVKVA+DAALL N+SNSSR G KS+ SP+ D L FKW QFMESERADIIGEPVGVNNR +E DA + ST +S
Subjt: SSLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASEHSTGES
Query: DDIEPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEGIQDLL
DD+EPTSEELE+LQD VRS RQTERKA+RTRAAEKT+TSVVSLKSGSSSRKKRNS+QEVDYSDPLRYLRATTS SRLLTA EELELSEGIQDLL
Subjt: DDIEPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEGIQDLL
Query: KLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH
KLE+LQ ELA+RYGNEPTFAQWAAAAG+NQR LRKRLNYGT CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH
Subjt: KLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH
Query: WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAESAE
WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP+DEEIAEAAGLSMKRL AVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAE+AE
Subjt: WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAESAE
Query: DQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
D LIKQFMKQDLEKVLDSLN RERQVIRWRFGMEDGRMKTLQEIGEIMGVSRER+RQIESCAFRKLKNKKRTKHLQQYLI
Subjt: DQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0K917 RNA polymerase sigma factor | 7.3e-269 | 87.39 | Show/hide |
Query: MSCLVPQFKCHPETFSIQFKTIAVTS---TFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRSYLSSVES
MSCL+PQFKCHPETFSIQFKT A S +FLPT S ++KVRDPHSLRTQCILSAASPPTSTGTATT +VDRLKLPPFDT TDSVSVERLRSYL +VES
Subjt: MSCLVPQFKCHPETFSIQFKTIAVTS---TFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRSYLSSVES
Query: SLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASEHSTGESD
SLASTLLTSE+A+IAAAAAEAVTLAKAAVKVA+DAALL N+ NSSR GTKSQ SPK D L FKW QFMESERADIIGEPVGVN R +EGDA E ST ESD
Subjt: SLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASEHSTGESD
Query: DIEPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEGIQDLLK
D+EPTSEELE+LQD V+S RQTERKA+RTRAAEKT TSV+S KSGSSSRKKRNSVQEVDYSDPLRYLRATT+ SRLLTATEELELSEGIQDLLK
Subjt: DIEPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEGIQDLLK
Query: LEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
LE+LQ EL ERYGNEPTFAQWAAAAG+NQR LRKRLNYGT CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt: LEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Query: WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAESAED
WIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL ENGRHP+D+EIAEAAGLSMKRL AVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAE+ ED
Subjt: WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAESAED
Query: QLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
LIKQFMKQDLEKVLDSLN RE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRER+RQIESCAFRKLKNKKRTKHLQQY++
Subjt: QLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
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| A0A1S3CD00 RNA polymerase sigma factor | 7.8e-271 | 87.91 | Show/hide |
Query: MSCLVPQFKCHPETFSIQFKTIAVTS---TFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRSYLSSVES
MSCL+PQFKCHPETFSIQFKT A S +F+PT S ++KVRDPHSLRTQCILSAASPPTSTGTATT NVDRLKLPPFDT TDSVSVERLRSYL +VES
Subjt: MSCLVPQFKCHPETFSIQFKTIAVTS---TFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRSYLSSVES
Query: SLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASEHSTGESD
SLASTLLTSE+ATIAAAAAEAVTLAKAAVKVA+DAALL N+ NSSR GTKSQ SPK D L FKW QFMESERADIIGEPVGVN R +EGDA E ST ESD
Subjt: SLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASEHSTGESD
Query: DIEPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEGIQDLLK
D+EPTS+ELE+LQD V+S RQTERKA+RTRAAEKT TSVV KSGSSSRKKR+S+QEVDYSDPLRYLRATTS SRLLTATEELELSEGIQDLLK
Subjt: DIEPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEGIQDLLK
Query: LEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
LE+LQ ELAERYGNEPTFAQWAAAAG+NQR LRKRLNYGT CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt: LEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Query: WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAESAED
WIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL SENGRHP+D+EIAEAAGLSMKRL AVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAE+AED
Subjt: WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAESAED
Query: QLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
LIKQFMKQDLEKVLDSLN RE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRER+RQIESCAFRKLKNKKRTKHLQQYL+
Subjt: QLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
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| A0A6J1DSR7 RNA polymerase sigma factor | 9.2e-272 | 87.52 | Show/hide |
Query: MSCLVPQFKCHPETFSIQFKTIAVTST----------FLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRS
MSCL+PQFKCHPETFSIQFKT A+T T FLPT S +KVRDPHSLRTQCILSAASP TSTGTATTFNV+RLKLPP D TDS+S ERLRS
Subjt: MSCLVPQFKCHPETFSIQFKTIAVTST----------FLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRS
Query: YLSSVESSLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASE
YLS+VESS ASTLLTSE+ATIAAAAAEAVTLAKAAVKVAKDAALLVN+SNSS+TG KSQ S KSD L FKWDQFMESERADIIG PVGVNNR EGDA +
Subjt: YLSSVESSLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASE
Query: HSTGESDDIEPTSEELEILQD-----AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEG
H T ESD +PT+EELE+LQD AVRS RQTER+AKRTRAAEK +TSVVS+KSGSSSRKKRNSVQEVDYSDPLRYLRATTS SRLLTATEELELSEG
Subjt: HSTGESDDIEPTSEELEILQD-----AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEG
Query: IQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF
IQDLLKLE+LQ EL ERYG EPTFAQWAAAAG+NQR LRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF
Subjt: IQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF
Query: STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPE
STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP+DEEIAEAAGLSMKRL AVLMTPKAPRSLEQKIGINQNLKPSEVISDPE
Subjt: STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPE
Query: AESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
AE++ED LIKQFMKQDLEKVLDSLN RERQVIRWRFGMEDGRMKTLQEIGEIMGVSRER+RQIESCAFRKLKNKKRTKHLQQYL+
Subjt: AESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
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| A0A6J1HL45 RNA polymerase sigma factor sigB | 5.4e-264 | 85.15 | Show/hide |
Query: MSCLVPQFKCHPETFSIQFKTIAVT----------STFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRS
MSCL+PQFKCHPETFSIQFKT A T TFLPT S + K RDPHSLRTQCILSAASPPT TGTATTFNVDRLKLPPFDT TDSVS ERLRS
Subjt: MSCLVPQFKCHPETFSIQFKTIAVT----------STFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRS
Query: YLSSVESSLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASE
YL +VESSLASTLLTSE+ATIAAAAAEAV LAKAAVK A DAALLVN+SNSSR+ TKSQ S +S+ L FKWDQFMESERADIIGEPVGVNNR VEGDA E
Subjt: YLSSVESSLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASE
Query: HSTGESDDIEPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSE
ST ESDD+EPTSEELE+L+D AVRS RQTERKA+RTRA+EK +TSVVSLKSGSSSRKKRNS QEVDY+DPLRYLRATTSAS+LLTA++ELELSE
Subjt: HSTGESDDIEPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSE
Query: GIQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
GIQDLLKLE+L+ ELA RYGNEPTFAQWAAAAG+NQR LRKRLNYGTFCKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFK
Subjt: GIQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY+VKEARKQLY+ NGR PNDEEIA AAGLSMKRL VLMTPKAPRSLEQK GINQNLKPSEVISDP
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Query: EAESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
EA +AED LIKQFMKQ+LEKVLDSLN RERQ+IRWR+GMEDGRMKTLQEIGE+MGVSRER+RQIE CAFRKLKNKKRTKHLQQYL+
Subjt: EAESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
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| A0A6J1KM29 RNA polymerase sigma factor | 8.6e-262 | 84.98 | Show/hide |
Query: MSCLVPQFKCHPETFSIQFKTIAVT----------STFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRS
MSCL+PQFKCHPETFSIQFKT A+T TFLPT S + KVRDPHSLRTQCILSAA TSTGTATTFNVDRLKLPPFDT TDSVS ERLRS
Subjt: MSCLVPQFKCHPETFSIQFKTIAVT----------STFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRS
Query: YLSSVESSLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASE
YL +VESSLASTLLTSE+ATIAAAAAEAV LAKAAVK A DAALLVN+SNS+R+ TKSQ S KS+ L FKWDQFMESERADIIGEPVGVNNR VEGDA E
Subjt: YLSSVESSLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASE
Query: HSTGESDDIEPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSE
ST ESDD+EPTSEELE+LQD AVRS RQTERKA+RTRA+EK +TSVVSLKSGSSSRKKRNS QEVDY+DPLRYLRATTSAS+LLTA++ELELSE
Subjt: HSTGESDDIEPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSE
Query: GIQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
GIQDLLKLE+L+ ELA RYGNEPTFAQWAAAAG+NQR LRKRLNYGTFCKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFK
Subjt: GIQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY+VKEARKQLY+ NGR P DEEIA AAGLSMKRL VLMTPKAPRSLEQK GINQNLKPSEVISDP
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Query: EAESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
EA +AED LIKQFMKQ+LEKVLDSLN RERQ+IRWR+GMEDGRMKTLQEIGE+MGVSRER+RQIE CAFRKLKNKKRTKHLQQYL+
Subjt: EAESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 2.0e-183 | 63.44 | Show/hide |
Query: SCLVPQFKCHPETFSIQFKTIAVTSTFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRSY---------L
SCL+PQFKC P++FSI F+T +F + S P QC +S SP T + +V +L+LP FDT +DS+ +R +Y
Subjt: SCLVPQFKCHPETFSIQFKTIAVTSTFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRSY---------L
Query: SSVESSLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASEHS
+E+ + TLLTS++A + AAAAEAV LA+AAVKVAKDA L NS+N++ T S +S KWDQF E ERA I+G + V++ + D S
Subjt: SSVESSLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASEHS
Query: TGESDDI----EPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELEL
+ I EE+E+L++ AVRSTRQTERKA+R + EKT++ + S+K+GSS +KKR QEVD++DPLRYLR TTS+S+LLT EE EL
Subjt: TGESDDI----EPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELEL
Query: SEGIQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG
S GIQDLLKLE+LQ EL ER G +PTFAQWA+AAG++Q+ LR+R+++GT CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KG
Subjt: SEGIQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG
Query: FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVIS
FKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EEIAEA GLSMKRL AVL++PK PRSL+QKIG+NQNLKPSEVI+
Subjt: FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVIS
Query: DPEAESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
DPEA ++ED LIK+FM+QDL+KVLDSL RE+QVIRWRFGMEDGRMKTLQEIGE+MGVSRERVRQIES AFRKLKNKKR HLQQYL+
Subjt: DPEAESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
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| P26683 RNA polymerase sigma factor SigA | 9.1e-75 | 45.18 | Show/hide |
Query: KSGSSSRKKRNSVQEVDY--SDPLRYLRATTSASRLLTATEELELSEGIQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKM
KSG +++ +R + + + D +R RLL A EE+EL+ I DLL+LE+++ L+E+ +P ++WA A + R RL+ G KDKM
Subjt: KSGSSSRKKRNSVQEVDY--SDPLRYLRATTSASRLLTATEELELSEGIQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKM
Query: IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN
++SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Subjt: IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN
Query: DEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEI
+EEIA +++++L + + + P SLE IG ++ + + I + + E+ EDQ+ K +++DLEKVLDSL+ RER V+R R+G++DGRMKTL+EIG+I
Subjt: DEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEI
Query: MGVSRERVRQIESCAFRKLKNKKRTKHLQQYL
V+RER+RQIE+ A RKL++ R L++Y+
Subjt: MGVSRERVRQIESCAFRKLKNKKRTKHLQQYL
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| P38023 RNA polymerase sigma factor SigA1 | 2.3e-70 | 41.02 | Show/hide |
Query: LQDAVRSTRQTERKAKRTRAAEKTSTSVVSL------------KSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEGIQDLLKLEKLQ
L+ A +++ RK T E +T + + ++ K + V++ D +R RLL A EE+EL+ I DLL LE+++
Subjt: LQDAVRSTRQTERKAKRTRAAEKTSTSVVSL------------KSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEGIQDLLKLEKLQ
Query: VELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA
EL E+ P+ A+WAAA R+RL G KDKM++SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA
Subjt: VELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA
Query: VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAESAEDQLIKQ
+ ++++DQSRTIRLP H+ E R+K+ K L E GR P +EEIA +++++L + + + P SLE IG ++ + + I + + E+ ED++ K
Subjt: VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAESAEDQLIKQ
Query: FMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYL
+++DLE VL +L+ RER V+R R+G++DGRMKTL+EIG++ V+RER+RQIE+ A RKL++ R L++Y+
Subjt: FMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYL
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| P52322 RNA polymerase sigma factor SigA | 1.5e-64 | 39.63 | Show/hide |
Query: EKTSTSVVSLKSGS-SSRKKRNSVQEVDYS-DPLRYLRATTSASRLLTATEELELSEGIQDLLKLEKL--------------QVELAERYG---------
E+TS S K+ +S ++R++ ++ Y+ D +R RLL A EE+EL+ I DLLKLE++ QV L ER
Subjt: EKTSTSVVSLKSGS-SSRKKRNSVQEVDYS-DPLRYLRATTSASRLLTATEELELSEGIQDLLKLEKL--------------QVELAERYG---------
Query: ----------------NEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY
P +W A + ++RL +G K+KM++SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTY
Subjt: ----------------NEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY
Query: AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAES
A WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E R P +EEIA +++++L + + + P SLE IG ++ + + I + + E+
Subjt: AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAES
Query: AEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYL
ED++ K +++DLE VLD+L+ RER V+R R+G++DGRMKTL+EIG+I V+RER+RQIE+ A RKL++ R L++Y+
Subjt: AEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYL
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| P74565 RNA polymerase sigma factor SigA | 5.5e-64 | 36.52 | Show/hide |
Query: SDDIEPTSEELEILQDAVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYS-DPLRYLRATTSASRLLTATEELELSEGIQDLLKLEK
+DDI+ ++E L+ V +T E+K ++ R +++V++ Y+ D +R RLL A EE+EL+ I DLL+LE
Subjt: SDDIEPTSEELEILQDAVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYS-DPLRYLRATTSASRLLTATEELELSEGIQDLLKLEK
Query: LQVELAERYGNEPTFAQWAAAA----GINQRML----------------------------------------RKRLNYGTFCKDKMIKSNIRLVISIAK
++ L + +P+ +W QR++ R+RL KDKM++SN+RLV+SIAK
Subjt: LQVELAERYGNEPTFAQWAAAA----GINQRML----------------------------------------RKRLNYGTFCKDKMIKSNIRLVISIAK
Query: NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMK
Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E R P +EEIAE ++++
Subjt: NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMK
Query: RLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIES
+L + + + P SLE IG ++ + + I + + E+ ED++ K +++DLE VLD+L+ RER V+R R+G++DGRMKTL+EIG+I V+RER+RQIE+
Subjt: RLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIES
Query: CAFRKLKNKKRTKHLQQYL
A RKL++ R L++Y+
Subjt: CAFRKLKNKKRTKHLQQYL
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 1.4e-184 | 63.44 | Show/hide |
Query: SCLVPQFKCHPETFSIQFKTIAVTSTFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRSY---------L
SCL+PQFKC P++FSI F+T +F + S P QC +S SP T + +V +L+LP FDT +DS+ +R +Y
Subjt: SCLVPQFKCHPETFSIQFKTIAVTSTFLPTPTSPFSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTITDSVSVERLRSY---------L
Query: SSVESSLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASEHS
+E+ + TLLTS++A + AAAAEAV LA+AAVKVAKDA L NS+N++ T S +S KWDQF E ERA I+G + V++ + D S
Subjt: SSVESSLASTLLTSEDATIAAAAAEAVTLAKAAVKVAKDAALLVNSSNSSRTGTKSQLSPKSDGLQFKWDQFMESERADIIGEPVGVNNRHVEGDASEHS
Query: TGESDDI----EPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELEL
+ I EE+E+L++ AVRSTRQTERKA+R + EKT++ + S+K+GSS +KKR QEVD++DPLRYLR TTS+S+LLT EE EL
Subjt: TGESDDI----EPTSEELEILQD------AVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELEL
Query: SEGIQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG
S GIQDLLKLE+LQ EL ER G +PTFAQWA+AAG++Q+ LR+R+++GT CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KG
Subjt: SEGIQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG
Query: FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVIS
FKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EEIAEA GLSMKRL AVL++PK PRSL+QKIG+NQNLKPSEVI+
Subjt: FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVIS
Query: DPEAESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
DPEA ++ED LIK+FM+QDL+KVLDSL RE+QVIRWRFGMEDGRMKTLQEIGE+MGVSRERVRQIES AFRKLKNKKR HLQQYL+
Subjt: DPEAESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
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| AT1G64860.1 sigma factor A | 1.4e-38 | 33.15 | Show/hide |
Query: KAKRTRAAEKTS-TSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEGIQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQ
+ +R A +KT+ T V ++ SS ++ R V+ V D +L+ E + LS+ I+ L+L+ + L +R G EP+ Q A + I++
Subjt: KAKRTRAAEKTS-TSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEGIQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQ
Query: RMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR
L+ L ++K+ SN+RLV+SIA+ Y G + DLVQ G GL+RG EKFD+SKGF+ STY +WWI+Q V ++L D SRT+RLP H+ E
Subjt: RMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR
Query: VKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEV----ISDPEAES----AEDQLIKQFMKQDLEKVLD-SLNQ
++ A+ +L E G P+ + IAE+ +S K++ SL++ + N P E I+D E+ D L +K+++ K++ +L +
Subjt: VKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEV----ISDPEAES----AEDQLIKQFMKQDLEKVLD-SLNQ
Query: RERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
RE+++IR +G+ D T ++I + +G+SRERVRQ+ A KLK+ R + ++ ++
Subjt: RERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLI
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| AT2G36990.1 RNApolymerase sigma-subunit F | 9.7e-64 | 38.28 | Show/hide |
Query: DASEHSTGESDDIEPTSEELEILQ--DAVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSE
D + + D TS + + + + VRS RQ ER+AK RA + +S KK+ Q D D L+ +LLTA EE EL
Subjt: DASEHSTGESDDIEPTSEELEILQ--DAVRSTRQTERKAKRTRAAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSE
Query: GIQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
IQ LLKLEK++ +L + G EPT +WA A GI+ +L+ ++ G ++K+I +N+RLV+ IAK YQ G+N QDL+QEG GL++ EKF G +
Subjt: GIQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
F+TYA+WWI+Q++RKS+ SRTIRLP ++ +V EARK E P+ EE+A G+S ++L +L + P S++Q I +Q+ E+ D
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Query: EAESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQY
E+ + KQ M+ + +L+ L+ +ER++I+ RFG++ G+ ++L EIGEI G+S+ERVRQ+ES A +LK + L Y
Subjt: EAESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQY
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| AT3G53920.1 RNApolymerase sigma-subunit C | 2.9e-52 | 33.15 | Show/hide |
Query: VRSTRQTERKAKRTR-AAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEGIQDLLKLEKLQVELAERYGNEPTFAQ
V S R+ ++KA+R+ AE S + + R N++ P +Y + SR E E+S G++ + +E+++ +L E G + +
Subjt: VRSTRQTERKAKRTR-AAEKTSTSVVSLKSGSSSRKKRNSVQEVDYSDPLRYLRATTSASRLLTATEELELSEGIQDLLKLEKLQVELAERYGNEPTFAQ
Query: WAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP
WAAAAG+N+++L + L+YG +C+D+++KS LV+ +A+NY+G G+ +DL+Q G G+++GAE+FD ++G+KFSTY +WI++++ +S +R + +P
Subjt: WAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP
Query: FHMVEATYRVKEARKQLYSENG-RHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAESAEDQLIKQFMKQDLEKVLDSLN
++ +++ARK L + +G ++ DEEIA+ G S+K++ A K S+++K+G K E D ES E+ +++Q ++D+ +L+ L
Subjt: FHMVEATYRVKEARKQLYSENG-RHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAESAEDQLIKQFMKQDLEKVLDSLN
Query: QRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYL
RE+QV+ R+G++D R K+L+EIG+++ VS+E +R+IE A KL+++ + L+ YL
Subjt: QRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQYL
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| AT5G13730.1 sigma factor 4 | 9.1e-46 | 36.33 | Show/hide |
Query: SASRLLTATEELELSEGIQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCR
S S L+ EE++L +++ KLE L + E NE A+ G +R + L ++K+ + RLV+SIA YQG G+NLQDL+QEG
Subjt: SASRLLTATEELELSEGIQDLLKLEKLQVELAERYGNEPTFAQWAAAAGINQRMLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCR
Query: GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQK
GL+RGAE+FD +G+K STY +WWIKQA+ ++++ +SR ++LP M E T +V EA L + R P+ EEIAE L++ + + ++P SL++
Subjt: GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNDEEIAEAAGLSMKRLTAVLMTPKAPRSLEQK
Query: IGINQNLKPSEVISDPEAESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQY
N + E++ P+ E+ + ++ MK ++E++L SL RE +V+ FG+ + +EIG+ + +SRERVRQI A +KL+N L+ Y
Subjt: IGINQNLKPSEVISDPEAESAEDQLIKQFMKQDLEKVLDSLNQRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERVRQIESCAFRKLKNKKRTKHLQQY
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