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Sed0002924 (gene) of Chayote v1 genome

Gene IDSed0002924
OrganismSechium edule (Chayote v1)
DescriptionProtein ELF4-LIKE
Genome locationLG12:28395494..28396522
RNA-Seq ExpressionSed0002924
SyntenySed0002924
Gene Ontology termsGO:0009649 - entrainment of circadian clock (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021961.1 Protein ELF4-LIKE 4 [Cucurbita argyrosperma subsp. argyrosperma]4.3e-5095.58Show/hide
Query:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL
        MEGD+FSG+GSTAQID KILQTF KNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG L
Subjt:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL

Query:  KSDGKAGQKRNRA
        KSDGKAGQKRNRA
Subjt:  KSDGKAGQKRNRA

XP_004144022.1 protein ELF4-LIKE 4 [Cucumis sativus]2.5e-5095.61Show/hide
Query:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL
        MEGD+FSGLGS+ QID KILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG L
Subjt:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

XP_022147541.1 protein ELF4-LIKE 4 [Momordica charantia]5.8e-4792.86Show/hide
Query:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL
        MEGD+FSGLGS AQIDGKILQ FQKNFVQVQ+ILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLS +FTRS+EVSSEGDSSG L
Subjt:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL

Query:  KSDGKAGQKRNR
        KSDGKAGQKRNR
Subjt:  KSDGKAGQKRNR

XP_022933909.1 protein ELF4-LIKE 4-like [Cucurbita moschata]4.3e-5095.58Show/hide
Query:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL
        MEGD+FSG+GSTAQID KILQTF KNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG L
Subjt:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL

Query:  KSDGKAGQKRNRA
        KSDGKAGQKRNRA
Subjt:  KSDGKAGQKRNRA

XP_022961237.1 protein ELF4-LIKE 4-like [Cucurbita moschata]1.1e-5096.49Show/hide
Query:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL
        MEGD+FSGLGS+AQID KILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG L
Subjt:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

TrEMBL top hitse value%identityAlignment
A0A0A0M235 Elf4 domain-containing protein1.2e-5095.61Show/hide
Query:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL
        MEGD+FSGLGS+ QID KILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG L
Subjt:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

A0A1S3BQA6 protein ELF4-LIKE 41.2e-5095.61Show/hide
Query:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL
        MEGD+FSGLGS+ QID KILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG L
Subjt:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

A0A5D3CFE9 Protein ELF4-LIKE 4-like isoform X21.2e-5095.61Show/hide
Query:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL
        MEGD+FSGLGS+ QID KILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG L
Subjt:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

A0A6J1H9N1 protein ELF4-LIKE 4-like5.5e-5196.49Show/hide
Query:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL
        MEGD+FSGLGS+AQID KILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG L
Subjt:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

A0A6J1JGF0 protein ELF4-LIKE 4-like5.5e-5196.49Show/hide
Query:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL
        MEGD+FSGLGS+AQID KILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG L
Subjt:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 42.0e-1342.17Show/hide
Query:  DGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG
        D  + +   +NF QVQ++LD+N+ LI ++N NH+S++ DN+++NV LI+ELN NI +VV++Y+DL+ SF+        G   G
Subjt:  DGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG

O80877 Protein ELF4-LIKE 12.0e-1340Show/hide
Query:  EGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSME----VSSEGDSS
        E D      S A  D ++  T    F + Q  LDQN+ LI  +N+NH S+IPDN++RNVGLI E+N NI +V+++Y+DLS +F +  +     + +GD++
Subjt:  EGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSME----VSSEGDSS

Q570U6 Protein ELF4-LIKE 48.8e-3872.57Show/hide
Query:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL
        MEGD  SG G    +DGK+LQ+FQK+FV VQ+ILDQN+LLI+EINQNHESK PDNL RNVGLI+ELNNNIRRV  LY DLS SF RS++ SSEG+SSG L
Subjt:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL

Query:  KSDGKAGQKRNRA
        KSDGKA QKR R+
Subjt:  KSDGKAGQKRNRA

Q8S8F5 Protein ELF4-LIKE 31.0e-3376.53Show/hide
Query:  MEGDSFSG-LGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS
        MEGD+ S  +GS  Q+DGKILQTF+K+FVQVQNILD N+LLI+EINQNHESKIPDNL RNVGLIRELNNN+RRV  LY DLS +F++SME SSEGDSS
Subjt:  MEGDSFSG-LGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS

Q94BS8 Protein ELF4-LIKE 21.4e-3571.05Show/hide
Query:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL
        MEGD +SG G   Q+DGK+LQ FQK+FVQVQ+ILDQN+LLI+EINQNHESK  D+L RNVGLIRELNNNIR V  LY DLS SF RS++ SSEG+S+G L
Subjt:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL

Query:  KSDGKA-GQKRNRA
        KSDGKA  QKR R+
Subjt:  KSDGKA-GQKRNRA

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 46.2e-3972.57Show/hide
Query:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL
        MEGD  SG G    +DGK+LQ+FQK+FV VQ+ILDQN+LLI+EINQNHESK PDNL RNVGLI+ELNNNIRRV  LY DLS SF RS++ SSEG+SSG L
Subjt:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL

Query:  KSDGKAGQKRNRA
        KSDGKA QKR R+
Subjt:  KSDGKAGQKRNRA

AT1G17455.2 ELF4-like 46.2e-3972.57Show/hide
Query:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL
        MEGD  SG G    +DGK+LQ+FQK+FV VQ+ILDQN+LLI+EINQNHESK PDNL RNVGLI+ELNNNIRRV  LY DLS SF RS++ SSEG+SSG L
Subjt:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL

Query:  KSDGKAGQKRNRA
        KSDGKA QKR R+
Subjt:  KSDGKAGQKRNRA

AT1G72630.1 ELF4-like 21.0e-3671.05Show/hide
Query:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL
        MEGD +SG G   Q+DGK+LQ FQK+FVQVQ+ILDQN+LLI+EINQNHESK  D+L RNVGLIRELNNNIR V  LY DLS SF RS++ SSEG+S+G L
Subjt:  MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVL

Query:  KSDGKA-GQKRNRA
        KSDGKA  QKR R+
Subjt:  KSDGKA-GQKRNRA

AT2G06255.1 ELF4-like 37.1e-3576.53Show/hide
Query:  MEGDSFSG-LGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS
        MEGD+ S  +GS  Q+DGKILQTF+K+FVQVQNILD N+LLI+EINQNHESKIPDNL RNVGLIRELNNN+RRV  LY DLS +F++SME SSEGDSS
Subjt:  MEGDSFSG-LGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS

AT2G40080.1 Protein of unknown function (DUF1313)1.4e-1442.17Show/hide
Query:  DGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG
        D  + +   +NF QVQ++LD+N+ LI ++N NH+S++ DN+++NV LI+ELN NI +VV++Y+DL+ SF+        G   G
Subjt:  DGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGTGATTCATTTTCAGGGCTTGGGAGTACTGCACAGATTGATGGCAAGATCTTGCAAACATTTCAAAAGAATTTTGTTCAAGTCCAAAACATATTAGATCAAAA
CAAGCTGCTGATCAGTGAGATAAACCAAAACCATGAGTCAAAGATCCCTGATAATCTCAACAGAAATGTGGGTCTGATCAGAGAATTAAACAACAATATCAGAAGGGTTG
TGGACTTATATGCTGATCTTTCATGTTCCTTCACCAGATCCATGGAAGTTTCTTCAGAAGGTGATTCCAGTGGGGTTTTGAAGTCAGATGGAAAGGCAGGCCAGAAGAGA
AACAGGGCTGCTTGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAAAGCCTCCATCTTTGCTATCTGATTCCTCTGTTTCAAAACTGGACTGTGGTGCTCATGATTCCTTTCTACAGTTCTTGTCTCATGTGCTTAAATCTCAATGT
AACAAAAAGGAAAAATAATGCAAATGTCTTACAAAGTACCTTATGCTTCTTCACATTCATTGGTTCTCAGTTAAAACTGAATTCCATAATGTAATGTAACCAAGAGGTTA
TAGATAAGGTTCTGATTTGATAGAGTTCTCATCTGTAAAGCCATGGAGGGTGATTCATTTTCAGGGCTTGGGAGTACTGCACAGATTGATGGCAAGATCTTGCAAACATT
TCAAAAGAATTTTGTTCAAGTCCAAAACATATTAGATCAAAACAAGCTGCTGATCAGTGAGATAAACCAAAACCATGAGTCAAAGATCCCTGATAATCTCAACAGAAATG
TGGGTCTGATCAGAGAATTAAACAACAATATCAGAAGGGTTGTGGACTTATATGCTGATCTTTCATGTTCCTTCACCAGATCCATGGAAGTTTCTTCAGAAGGTGATTCC
AGTGGGGTTTTGAAGTCAGATGGAAAGGCAGGCCAGAAGAGAAACAGGGCTGCTTGATCCACAAACATTCATCTTTCTCAATTCTTTGGCATGGTGGGAGACAAGGAAAC
AAACAACATTTCTCATCTCTGTCAAAAACAGGCTAGTATATCAATAGCTTCTCTCTCTCTGTAACTTTCTTGTATGATTTTAACTATCTAGTTTTACTCAGTGTTCTTCA
TCATCTTATTTCCTTGCATTTCTTTAGAGAAAAATAATTGTCCTGATTCTGTATTTAATTGCTTTTCTGCCTAACTGTGGATCTACTTGACCAAATTAAGCATCAAATTC
TCATCTGGTTTCTGGTTTTGGTTCCAAA
Protein sequenceShow/hide protein sequence
MEGDSFSGLGSTAQIDGKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGVLKSDGKAGQKR
NRAA