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Sed0002959 (gene) of Chayote v1 genome

Gene IDSed0002959
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG09:8453814..8464312
RNA-Seq ExpressionSed0002959
SyntenySed0002959
Gene Ontology termsGO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0006413 - translational initiation (biological process)
GO:0006468 - protein phosphorylation (biological process)
GO:0048544 - recognition of pollen (biological process)
GO:0005672 - transcription factor TFIIA complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0004674 - protein serine/threonine kinase activity (molecular function)
GO:0004712 - protein serine/threonine/tyrosine kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0030246 - carbohydrate binding (molecular function)
GO:0106310 - protein serine kinase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5463231.1 hypothetical protein F2P56_019161 [Juglans regia]2.5e-4775Show/hide
Query:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP
        +DLRAASAIRL LAKNVLAN+HGIST K+LWEKLE ++Q K +SNR+YLK+QF+TL M EGT ISDHLSVLNG+VSELE IGVKI+DED+ LRLI SLP 
Subjt:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP

Query:  SYEHMKPILMYGKESLNFAEATNKLLSEERRL
        SYEHMKPIL++GKE + F+E T+KL SEERRL
Subjt:  SYEHMKPILMYGKESLNFAEATNKLLSEERRL
KAF5758504.1 putative RNA-directed DNA polymerase [Helianthus annuus]2.7e-4978.79Show/hide
Query:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP
        +DLRAASAIRL LAKNVLANVHGIST K+LWEKLE ++Q K ISNRLYLK+QF+TLRM+  TKISDHLSVLN +VSELE IGVK+EDEDK LRLILSL  
Subjt:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP

Query:  SYEHMKPILMYGKESLNFAEATNKLLSEERRL
        SYEHMKPILMYGKE+L +A+ T KLLSEE+RL
Subjt:  SYEHMKPILMYGKESLNFAEATNKLLSEERRL
KAF5765959.1 putative RNA-directed DNA polymerase [Helianthus annuus]1.0e-4878.03Show/hide
Query:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP
        +DLRAASAIRL LAKNVLANVHGIST K+LWEKLE ++Q K I NRLYLK+QF+TLRM+  TKISDHLSVLN +VSELE IGVK+EDEDK LRLILSL  
Subjt:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP

Query:  SYEHMKPILMYGKESLNFAEATNKLLSEERRL
        SYEHMKPILMYGKE+L +A+ T KLLSEE+RL
Subjt:  SYEHMKPILMYGKESLNFAEATNKLLSEERRL
PON56879.1 hypothetical protein TorRG33x02_294980 [Trema orientale]8.7e-4875.76Show/hide
Query:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP
        +D RAASAIR+ LAKNVLANV GI+T K+LW KLE ++QAK +SNR+YLK+QF+TLRM EGTKISDHLSVLNG+VSELE IGVKIEDEDK LR I S+PP
Subjt:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP

Query:  SYEHMKPILMYGKESLNFAEATNKLLSEERRL
        SYEHMKPIL++GKE++ F+E T+KLLSEERRL
Subjt:  SYEHMKPILMYGKESLNFAEATNKLLSEERRL
XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]1.3e-5178.99Show/hide
Query:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP
        MDLRAASAIR +LAKN+LANVH IST KELWEKLEA++QAK ISNRLYLK+QF+TL+MEEG KISDHLS LN ++ ELE I VKI+DEDK LRLILSLP 
Subjt:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP

Query:  SYEHMKPILMYGKESLNFAEATNKLLSEERRLKLDERT
        SYEHMKPILMYGK++LNFAE T+KLLSEERRLK + RT
Subjt:  SYEHMKPILMYGKESLNFAEATNKLLSEERRLKLDERT
TrEMBL top hitse value%identityAlignment
A0A2P5C765 Uncharacterized protein4.2e-4875.76Show/hide
Query:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP
        +D RAASAIR+ LAKNVLANV GI+T K+LW KLE ++QAK +SNR+YLK+QF+TLRM EGTKISDHLSVLNG+VSELE IGVKIEDEDK LR I S+PP
Subjt:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP

Query:  SYEHMKPILMYGKESLNFAEATNKLLSEERRL
        SYEHMKPIL++GKE++ F+E T+KLLSEERRL
Subjt:  SYEHMKPILMYGKESLNFAEATNKLLSEERRL
A0A6A3BK59 CCHC-type domain-containing protein1.0e-4673.53Show/hide
Query:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP
        +D+RAAS IRL LAKNVLANV   S+ KELWEKLE M+QAKS+SNRLYLK++F+ L+MEEGTKISDHLS LNG+VSELE IGV+I+DEDK LRLI SLP 
Subjt:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP

Query:  SYEHMKPILMYGKESLNFAEATNKLLSEERRLKLDE
        SYEHM+ +LMYGKE++NF+E T+KL+SEERRLK  E
Subjt:  SYEHMKPILMYGKESLNFAEATNKLLSEERRLKLDE
A0A6A3CWI3 CCHC-type domain-containing protein1.8e-4673.53Show/hide
Query:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP
        +D+RAAS IRL LAKNVLANV   S+ KELWEKLE M+QAKS+SNRLYLK++F+ L+MEEGTKISDHLS LNG+VSELE IGV I+DEDK LRLI SLP 
Subjt:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP

Query:  SYEHMKPILMYGKESLNFAEATNKLLSEERRLKLDE
        SYEHM+ +LMYGKE++NF+E T+KL+SEERRLK  E
Subjt:  SYEHMKPILMYGKESLNFAEATNKLLSEERRLKLDE
A0A6A3DA47 CCHC-type domain-containing protein1.0e-4673.53Show/hide
Query:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP
        +D+RAAS IRL LAKNVLANV   S+ KELWEKLE M+QAKS+SNRLYLK++F+ L+MEEGTKISDHLS LNG+VSELE IGV+I+DEDK LRLI SLP 
Subjt:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP

Query:  SYEHMKPILMYGKESLNFAEATNKLLSEERRLKLDE
        SYEHM+ +LMYGKE++NF+E T+KL+SEERRLK  E
Subjt:  SYEHMKPILMYGKESLNFAEATNKLLSEERRLKLDE
A0A6J1CG82 uncharacterized protein LOC1110105216.3e-5278.99Show/hide
Query:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP
        MDLRAASAIR +LAKN+LANVH IST KELWEKLEA++QAK ISNRLYLK+QF+TL+MEEG KISDHLS LN ++ ELE I VKI+DEDK LRLILSLP 
Subjt:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP

Query:  SYEHMKPILMYGKESLNFAEATNKLLSEERRLKLDERT
        SYEHMKPILMYGK++LNFAE T+KLLSEERRLK + RT
Subjt:  SYEHMKPILMYGKESLNFAEATNKLLSEERRLKLDERT
SwissProt top hitse value%identityAlignment
P04146 Copia protein1.3e-0928.93Show/hide
Query:  TVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPPSYEH-MKPILMYGKESLNFAEATNK
        T +++ E L+A+++ KS++++L L+ +  +L++     +  H  + + ++SEL   G KIE+ DK   L+++LP  Y+  +  I    +E+L  A   N+
Subjt:  TVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPPSYEH-MKPILMYGKESLNFAEATNK

Query:  LLSEERRLKLDER-THKRIQH
        LL +E ++K D   T K++ +
Subjt:  LLSEERRLKLDER-THKRIQH
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.2e-2641.91Show/hide
Query:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP
        +D RAASAIRL+L+ +V+ N+    T + +W +LE+++ +K+++N+LYLK Q Y L M EGT    HL+V NG++++L  +GVKIE+EDK + L+ SLP 
Subjt:  MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPP

Query:  SYEHMKPILMYGKESLNFAEATNKLLSEERRLKLDE
        SY+++   +++GK ++   + T+ LL  E+  K  E
Subjt:  SYEHMKPILMYGKESLNFAEATNKLLSEERRLKLDE
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGAGAGCTGCAAGTGCCATCAGATTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATGGAATATCAACAGTCAAAGAGCTTTGGGAGAAGCTTGAAGCGAT
GTTTCAGGCAAAGAGCATTTCAAATCGGTTGTACCTGAAGGATCAATTTTACACATTGCGAATGGAAGAAGGTACGAAAATCTCAGATCATCTTAGTGTTCTCAATGGTG
TTGTCTCTGAGCTGGAGGTAATTGGTGTGAAGATAGAGGACGAGGATAAGACACTAAGGCTTATCTTGTCACTTCCCCCTTCTTATGAACATATGAAACCAATTTTGATG
TACGGAAAAGAGTCTTTAAATTTTGCAGAGGCTACTAATAAACTTCTATCGGAAGAAAGAAGGCTGAAGCTTGATGAGCGTACTCATAAGAGGATTCAACACTAG
mRNA sequenceShow/hide mRNA sequence
CTCGTGTCTCTTGTGCATGTCTTGATCTCGGGCCTCAACTTTGACAGCTCAATGAAGCGATGAATCAAAATGGCCCTAGCTCGCACTACTCATCCATTTCCTCTTCTCTT
TCGATTATCCAGCGAAACTCTGGCGATCTCTGCATTTCCCTCGATTAGTTGCATTTGATTGATCGATCGAGACTATGTATCAGAGAATTGATACATGAACGGTAAGATCT
AACTCCTTTCTCCTTCTTTTCGAATTCAATCTTTCTCTATCAGTTTTGATCTATCTTACTAACTCGCTTTGATTCTTGTGCGAGATTCACAACAAGAGTAAAACACACAC
AAAAGATTGAGAGTAAGAGAGTAAGAGAAAGTATACACCAAGGTTTTGCAGTTCAGCAACTCAGGCTTACTCCATAGGAAGAACACAAATTTGCTAGGATTGAAGCAGAA
ATGGCAAGCTTTATGAGTTCAGTGGAGTTTGACGTGGAGAAATTTGATGGAAGGATGAATTTTGGCTTGCGGCAAGTGCAAGTCAAAGATGTGCTAATACAATCTGGATT
ACACAAGGCTTTGAAGGGAAGATCAAGTAGTGGTGATTCTGAAAAATCAAGCGGTGATGGTGGTTCAACAGAGTTCAGTGGTAATTCTAACAAAAGTTCTAAGAAGTCCA
GCATGAGTGATGATGAATGAGAGGAAATGGATTTGAGAGCTGCAAGTGCCATCAGATTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATGGAATATCAACAGTCAAA
GAGCTTTGGGAGAAGCTTGAAGCGATGTTTCAGGCAAAGAGCATTTCAAATCGGTTGTACCTGAAGGATCAATTTTACACATTGCGAATGGAAGAAGGTACGAAAATCTC
AGATCATCTTAGTGTTCTCAATGGTGTTGTCTCTGAGCTGGAGGTAATTGGTGTGAAGATAGAGGACGAGGATAAGACACTAAGGCTTATCTTGTCACTTCCCCCTTCTT
ATGAACATATGAAACCAATTTTGATGTACGGAAAAGAGTCTTTAAATTTTGCAGAGGCTACTAATAAACTTCTATCGGAAGAAAGAAGGCTGAAGCTTGATGAGCGTACT
CATAAGAGGATTCAACACTAGTAGTTGGCAATTGGAAGAAGAAGAGAAACTTTGTGCAAAAGAGAAGTTGCTGGGAATGTGGACAACCTGGTCACATGAGAAACAATTGT
CCTAATAGAGCAAGTTCGTCAAAGGGCTCTAGTTCGGATGCTGACGTGGTCTCTCTCGTCCGGGGATCTGGTGATGCCCTCTGAAGAAAGAAAGAAATCATCCTCATGGT
ATGTCCGCTTTGCCATGGTAGAGGATGTGATGTCAGCGGTTCCACAAGTTGGTATACAGGCATTGGCTTGGCGGTTATGCAAGGTGTGTGGTGGAAGTTATGTCGATGGC
TGAAGGACTTCCAGATGTCAACAGTGTAGTGCTCGAAACAAGGATTCCAACGCAATTTGAATTACTCAAATCGGAGTTGAAACGAAGAAGTTATTGACAAAACAAGTTTG
AACGAGAAAATCCCGAGACGGTGACGTGGCAGCTGAGTGTACATCGTGGGCTATTTAGAAGTTGACATGTGGAGTTTTGGATGAGTGAAAAATGACAAATGGTG
Protein sequenceShow/hide protein sequence
MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPPSYEHMKPILM
YGKESLNFAEATNKLLSEERRLKLDERTHKRIQH