; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0002960 (gene) of Chayote v1 genome

Gene IDSed0002960
OrganismSechium edule (Chayote v1)
Descriptionglycine-rich RNA-binding protein 2-like
Genome locationLG13:21177135..21177959
RNA-Seq ExpressionSed0002960
SyntenySed0002960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608571.1 hypothetical protein SDJN03_01913, partial [Cucurbita argyrosperma subsp. sororia]1.1e-5672.73Show/hide
Query:  LLVFAVTIYGSSANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQNRGGGGGYGWGW--GGGSGGGGSGGGGGGGGGWGWGGGGGGWWK
        L+ F V +YGS A    NG      TFLTFSELP GN  EGRN S NTTTVEVS QNRGGGGGYGWGW  GGG GGGG GGGGGGGGGWGWGGGGGGWWK
Subjt:  LLVFAVTIYGSSANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQNRGGGGGYGWGW--GGGSGGGGSGGGGGGGGGWGWGGGGGGWWK

Query:  WGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAHCR
        WGCGGQPKS      GRRGGG        R KN +RKR+ NE DY MGEFA+C+V+GRCRGMRLDCPLHCGGPCFYDC+YMCKAHCR
Subjt:  WGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAHCR

KAG7037889.1 hypothetical protein SDJN02_01520, partial [Cucurbita argyrosperma subsp. argyrosperma]9.4e-5670.68Show/hide
Query:  LVFAVTIYGSSANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQNRGGGGGYGWGW-------GGGSGGGGSGGGGGGGGGWGWGGGGG
        + F V +YGS A    NG      TFLTFSELP GN  EGRN S NTTTVEVS QNRGGGGGYGWGW       GGG GGGG GGGGGGGGGWGWGGGGG
Subjt:  LVFAVTIYGSSANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQNRGGGGGYGWGW-------GGGSGGGGSGGGGGGGGGWGWGGGGG

Query:  GWWKWGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAHCR
        GWWKWGCGGQPKS      GRRGGG        R KN +RKR+ NE DY MGEFA+C+V+GRCRGMRLDCPLHCGGPCFYDC+YMCKAHCR
Subjt:  GWWKWGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAHCR

XP_008455258.1 PREDICTED: keratin, type II cytoskeletal 1 [Cucumis melo]7.7e-5870.73Show/hide
Query:  WKNPMKLISLLLVFAVTIYGS-SANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQN--RGGGGGYGWGW----GGGSGGGGSGGGGGG
        W+NP+KL S L++ A  IYGS +A    NG+ P NVTFLTFSELP  N  E RN SSNT+TVEVS QN   GGGGGYGWGW    GGG GGGG GGGGGG
Subjt:  WKNPMKLISLLLVFAVTIYGS-SANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQN--RGGGGGYGWGW----GGGSGGGGSGGGGGG

Query:  GGGWGWGGGGGGWWKWGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAH
        GGGWGWGGGGGGWWKWGCGG+PK     K GRR    DD+G   R KN  RK+M NE DYRMGEFAQC+V+GRCRGMRLDCPLHCGGPCFYDC+YMCKAH
Subjt:  GGGWGWGGGGGGWWKWGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAH

Query:  C-RHP
        C RHP
Subjt:  C-RHP

XP_011659711.1 keratin, type II cytoskeletal 2 epidermal [Cucumis sativus]1.1e-5672.08Show/hide
Query:  WKNPMKLISLLLVFAVTIYGS-SANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQN-RGGGGGYGWGWG-GGSGGGGSGGGGGGGGGW
        W+NP+KL S L++ A  I GS +A    NG+ P NVTFLTFSELP  N  E RN SSN+TTVEVS QN  GGGGGYGWGWG GG GGGG GGGGGGGGGW
Subjt:  WKNPMKLISLLLVFAVTIYGS-SANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQN-RGGGGGYGWGWG-GGSGGGGSGGGGGGGGGW

Query:  GWGGGGGGWWKWGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAHC
        GWGGGGGGWWKWGCGGQPKS R    GRR    DD+G  R VK    KRM +E DYRMGEFAQC+V+GRCRGMRLDCPLHCGGPCFYDC+YMCKAHC
Subjt:  GWGGGGGGWWKWGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAHC

XP_022940700.1 glycine-rich RNA-binding protein 2-like [Cucurbita moschata]3.9e-5472.38Show/hide
Query:  VTIYGSSANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQNRGGGGGYGWGW-GGGSGGGGSGGGGGGGGGWGWGGGGGGWWKWGCGGQ
        + +YGS A    NG      TFLTFSELP GN  EGRN S NTTTVEVS QNRGGGGGYGWGW GGG GGGG GGGGGGGGGWGWGGGGGGWWKWGCGGQ
Subjt:  VTIYGSSANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQNRGGGGGYGWGW-GGGSGGGGSGGGGGGGGGWGWGGGGGGWWKWGCGGQ

Query:  PKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAHCR
        PKS      GRRGGG        R KN +RKR+ NE DY +GEFA+C+V+GRCRGMRLDCPLHCGGPCFYDC++MCKAHCR
Subjt:  PKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAHCR

TrEMBL top hitse value%identityAlignment
A0A0A0K766 Uncharacterized protein5.3e-5772.08Show/hide
Query:  WKNPMKLISLLLVFAVTIYGS-SANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQN-RGGGGGYGWGWG-GGSGGGGSGGGGGGGGGW
        W+NP+KL S L++ A  I GS +A    NG+ P NVTFLTFSELP  N  E RN SSN+TTVEVS QN  GGGGGYGWGWG GG GGGG GGGGGGGGGW
Subjt:  WKNPMKLISLLLVFAVTIYGS-SANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQN-RGGGGGYGWGWG-GGSGGGGSGGGGGGGGGW

Query:  GWGGGGGGWWKWGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAHC
        GWGGGGGGWWKWGCGGQPKS R    GRR    DD+G  R VK    KRM +E DYRMGEFAQC+V+GRCRGMRLDCPLHCGGPCFYDC+YMCKAHC
Subjt:  GWGGGGGGWWKWGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAHC

A0A1S3C029 keratin, type II cytoskeletal 13.7e-5870.73Show/hide
Query:  WKNPMKLISLLLVFAVTIYGS-SANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQN--RGGGGGYGWGW----GGGSGGGGSGGGGGG
        W+NP+KL S L++ A  IYGS +A    NG+ P NVTFLTFSELP  N  E RN SSNT+TVEVS QN   GGGGGYGWGW    GGG GGGG GGGGGG
Subjt:  WKNPMKLISLLLVFAVTIYGS-SANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQN--RGGGGGYGWGW----GGGSGGGGSGGGGGG

Query:  GGGWGWGGGGGGWWKWGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAH
        GGGWGWGGGGGGWWKWGCGG+PK     K GRR    DD+G   R KN  RK+M NE DYRMGEFAQC+V+GRCRGMRLDCPLHCGGPCFYDC+YMCKAH
Subjt:  GGGWGWGGGGGGWWKWGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAH

Query:  C-RHP
        C RHP
Subjt:  C-RHP

A0A2N9IZ96 Uncharacterized protein4.6e-3249.53Show/hide
Query:  LLLVFAVTIYGSSANNFHNGT--RPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQNR---------------GGGGGYGWGW-------GGGSGGG
        ++L  A  I G   +   NGT    +N T L   +   GN   G    +N+T V + N+N                GGGG Y WGW       GGG GGG
Subjt:  LLLVFAVTIYGSSANNFHNGT--RPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQNR---------------GGGGGYGWGW-------GGGSGGG

Query:  GSGGGGGGGGGWGWGGGGGGWWKWGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYD
        G GGGGGGGGGWGWGGGG G + WGCGGQPK G+    G RG  ++         + +R R+ N+ DY++GEFAQC+VR RCRGMRLDCPLHCGGPCFYD
Subjt:  GSGGGGGGGGGWGWGGGGGGWWKWGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYD

Query:  CQYMCKAHCRHP
        CQ+MCKAHCR P
Subjt:  CQYMCKAHCRHP

A0A5B6X6H1 RNA-binding protein cabeza-like6.6e-3172.31Show/hide
Query:  GGGGGYGWGWGGGSGGGGSGGGGGGGGGWGW-GGGGGGWWKWGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRC
        GGGGGYGWGWGGG GGGG GGGGGGGGGWGW GGGGGGW+KWGCGG+       K G+  G   D GS  R    +RKR  N+ DY+MGEFAQC VRGRC
Subjt:  GGGGGYGWGWGGGSGGGGSGGGGGGGGGWGW-GGGGGGWWKWGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRC

Query:  RGMRLDCPLHCGGPCFYDCQYMCKAHCRHP
        RGMRLDCPLHCGGPC YDCQ+MCKAHCR P
Subjt:  RGMRLDCPLHCGGPCFYDCQYMCKAHCRHP

A0A6J1FRC8 glycine-rich RNA-binding protein 2-like1.9e-5472.38Show/hide
Query:  VTIYGSSANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQNRGGGGGYGWGW-GGGSGGGGSGGGGGGGGGWGWGGGGGGWWKWGCGGQ
        + +YGS A    NG      TFLTFSELP GN  EGRN S NTTTVEVS QNRGGGGGYGWGW GGG GGGG GGGGGGGGGWGWGGGGGGWWKWGCGGQ
Subjt:  VTIYGSSANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQNRGGGGGYGWGW-GGGSGGGGSGGGGGGGGGWGWGGGGGGWWKWGCGGQ

Query:  PKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAHCR
        PKS      GRRGGG        R KN +RKR+ NE DY +GEFA+C+V+GRCRGMRLDCPLHCGGPCFYDC++MCKAHCR
Subjt:  PKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAHCR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G75550.1 glycine-rich protein2.6e-1943.56Show/hide
Query:  MKLISLLLVFAVTIYGSSANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTT-VEVSNQNR---GGGGGYGWGW-----GGGSGGGGSGGGGGGGG
        MK IS L+V  + I     N   +G   +N             V+   N  ++TTT V V ++ R   GG G Y WGW     GGG GGGG GGGGGGGG
Subjt:  MKLISLLLVFAVTIYGSSANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTT-VEVSNQNR---GGGGGYGWGW-----GGGSGGGGSGGGGGGGG

Query:  GWGW--GGGGGGWWKWGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAH
        GWGW  GGGGGGW+KWGCGG    G + K GR G G                      ++   E+A+C  RG+C G RL+CP HCGG CFYDC ++CK H
Subjt:  GWGW--GGGGGGWWKWGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAH

Query:  CR
        CR
Subjt:  CR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAATTGGAAAAATCCAATGAAATTGATCTCTCTTTTGTTAGTTTTTGCAGTGACAATTTATGGGTCTAGCGCTAATAATTTCCATAATGGCACTAGACCCACAAA
TGTCACATTCTTAACCTTCTCAGAGCTGCCACTGGGAAATGTAAGGGAGGGAAGAAACATTTCTAGTAATACTACTACGGTTGAGGTCAGCAACCAGAATCGAGGCGGCG
GCGGTGGCTATGGTTGGGGATGGGGCGGAGGGAGTGGCGGTGGAGGTAGTGGGGGCGGTGGAGGTGGTGGCGGTGGATGGGGATGGGGAGGAGGTGGAGGTGGGTGGTGG
AAATGGGGTTGTGGAGGGCAGCCTAAATCTGGCAGAAGAAGCAAATTTGGACGACGAGGCGGCGGCGACGACGACGACGGCAGCGATAGGAGAGTAAAAAATGGAAACAG
GAAGAGAATGGACAATGAAAATGATTATAGAATGGGAGAATTTGCACAATGTATTGTAAGAGGAAGATGTAGAGGCATGAGATTGGACTGTCCACTCCATTGCGGCGGGC
CTTGCTTCTACGACTGTCAATACATGTGCAAGGCCCACTGTCGACACCCGCACCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTAATTGGAAAAATCCAATGAAATTGATCTCTCTTTTGTTAGTTTTTGCAGTGACAATTTATGGGTCTAGCGCTAATAATTTCCATAATGGCACTAGACCCACAAA
TGTCACATTCTTAACCTTCTCAGAGCTGCCACTGGGAAATGTAAGGGAGGGAAGAAACATTTCTAGTAATACTACTACGGTTGAGGTCAGCAACCAGAATCGAGGCGGCG
GCGGTGGCTATGGTTGGGGATGGGGCGGAGGGAGTGGCGGTGGAGGTAGTGGGGGCGGTGGAGGTGGTGGCGGTGGATGGGGATGGGGAGGAGGTGGAGGTGGGTGGTGG
AAATGGGGTTGTGGAGGGCAGCCTAAATCTGGCAGAAGAAGCAAATTTGGACGACGAGGCGGCGGCGACGACGACGACGGCAGCGATAGGAGAGTAAAAAATGGAAACAG
GAAGAGAATGGACAATGAAAATGATTATAGAATGGGAGAATTTGCACAATGTATTGTAAGAGGAAGATGTAGAGGCATGAGATTGGACTGTCCACTCCATTGCGGCGGGC
CTTGCTTCTACGACTGTCAATACATGTGCAAGGCCCACTGTCGACACCCGCACCTCTAATTTGCTAAGCCTACTATGACCCTCAACTTCCCTAACTCTCATAAACCGTAA
ATCCTAAACCCTAACTTTGAATCTCTACTTGGATGTCAAAGAAATCTATAGGATATTACTTCTTAGATAGATGGCTATCAATTGTCAAAACTCCTTTCATTTAAGTATTG
TGTTAAGAGTGTTTGCAGTGTTTTTTTCTTTATATACTATCCATACCAACTTGTC
Protein sequenceShow/hide protein sequence
MSNWKNPMKLISLLLVFAVTIYGSSANNFHNGTRPTNVTFLTFSELPLGNVREGRNISSNTTTVEVSNQNRGGGGGYGWGWGGGSGGGGSGGGGGGGGGWGWGGGGGGWW
KWGCGGQPKSGRRSKFGRRGGGDDDDGSDRRVKNGNRKRMDNENDYRMGEFAQCIVRGRCRGMRLDCPLHCGGPCFYDCQYMCKAHCRHPHL