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Sed0002962 (gene) of Chayote v1 genome

Gene IDSed0002962
OrganismSechium edule (Chayote v1)
DescriptionCold-regulated protein
Genome locationLG07:30541250..30541483
RNA-Seq ExpressionSed0002962
SyntenySed0002962
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008457074.1 PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo]6.1e-3285.71Show/hide
Query:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
        MAVG GVP+CIECGT SNPCRCKVVGPTLG +AF VAA VEWPVGALV+CFRH KGRRIMAHPATVV+PSVSNA+PI
Subjt:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
XP_022143411.1 uncharacterized protein LOC111013291 [Momordica charantia]8.0e-3287.01Show/hide
Query:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
        MAVG GVP+CIECGT SNPCRCKVVGPTLG +AF  AA VEWPVGALVYCFRH KGRRIMAHPATVV+PSVSNAVPI
Subjt:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
XP_022935253.1 uncharacterized protein LOC111442190 [Cucurbita moschata]4.0e-3184.42Show/hide
Query:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
        MAVG GVP+C+ECGT  NPCRCKVVGPTLG +AF VAA VEWPVGALVYCFRH KGRRIMAHP TVV+PSVSNAVPI
Subjt:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
XP_023528466.1 uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo]3.0e-3184.42Show/hide
Query:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
        MAVG GVP+C+ECGT  NPCRCKVVGPTLG +AF VAA VEWPVGALVYCFRH KGRRIMAHP TVV+PSVSNAVPI
Subjt:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
XP_031737948.1 uncharacterized protein LOC116402578 [Cucumis sativus]1.8e-3185.71Show/hide
Query:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
        M VG GVP+CIECGT SNPCRCKVVGPTLG +AF VAA VEWPVGALV+CFRH KGRRIMAHPATVV+PSVSNAVPI
Subjt:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
TrEMBL top hitse value%identityAlignment
A0A0A0LA45 Uncharacterized protein8.6e-3285.71Show/hide
Query:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
        M VG GVP+CIECGT SNPCRCKVVGPTLG +AF VAA VEWPVGALV+CFRH KGRRIMAHPATVV+PSVSNAVPI
Subjt:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
A0A1S3C5C8 uncharacterized protein LOC1034968423.0e-3285.71Show/hide
Query:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
        MAVG GVP+CIECGT SNPCRCKVVGPTLG +AF VAA VEWPVGALV+CFRH KGRRIMAHPATVV+PSVSNA+PI
Subjt:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
A0A218XJX3 Uncharacterized protein7.3e-3180.52Show/hide
Query:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
        MA+G GVP+C+ECGT SNPCRCKVVGPTLG +AF  AA VEWP+GALVYCFRH KGRRIMAHPATVV+PSV+NA+PI
Subjt:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
A0A6J1CQ64 uncharacterized protein LOC1110132913.9e-3287.01Show/hide
Query:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
        MAVG GVP+CIECGT SNPCRCKVVGPTLG +AF  AA VEWPVGALVYCFRH KGRRIMAHPATVV+PSVSNAVPI
Subjt:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
A0A6J1FA13 uncharacterized protein LOC1114421901.9e-3184.42Show/hide
Query:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
        MAVG GVP+C+ECGT  NPCRCKVVGPTLG +AF VAA VEWPVGALVYCFRH KGRRIMAHP TVV+PSVSNAVPI
Subjt:  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G03341.1 unknown protein5.7e-2873.24Show/hide
Query:  VPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI
        +P+C++CGT  NPCRCKVVGPTLGLVAFV A  VEWPVGALVY F+H KGRRIM HPAT V+P VS ++PI
Subjt:  VPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTGGGGACGGGCGTTCCGTTGTGCATCGAGTGTGGGACCCGCAGCAACCCGTGCCGGTGCAAGGTGGTGGGGCCGACGCTGGGGTTGGTCGCCTTCGTGGTGGC
GGCGGCGGTGGAGTGGCCGGTGGGAGCTCTGGTTTACTGCTTCCGCCACCGTAAGGGCCGCCGCATCATGGCGCACCCGGCCACTGTCGTTTTCCCCTCCGTGTCTAATG
CAGTTCCCATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGTGGGGACGGGCGTTCCGTTGTGCATCGAGTGTGGGACCCGCAGCAACCCGTGCCGGTGCAAGGTGGTGGGGCCGACGCTGGGGTTGGTCGCCTTCGTGGTGGC
GGCGGCGGTGGAGTGGCCGGTGGGAGCTCTGGTTTACTGCTTCCGCCACCGTAAGGGCCGCCGCATCATGGCGCACCCGGCCACTGTCGTTTTCCCCTCCGTGTCTAATG
CAGTTCCCATTTGA
Protein sequenceShow/hide protein sequence
MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI