CuGenDBv2

Gene ID	Sed0002965
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L2, chloroplastic
Genome location	Contig00347:51916..53368
RNA-Seq Expression	Sed0002965
Synteny	Sed0002965
Gene Ontology terms	GO:0002181 - cytoplasmic translation (biological process) GO:0009536 - plastid (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002171 - Ribosomal protein L2 IPR008991 - Translation protein SH3-like domain superfamily IPR012340 - Nucleic acid-binding, OB-fold IPR014722 - Ribosomal protein L2, domain 2 IPR014726 - Ribosomal protein L2, domain 3 IPR022666 - Ribosomal Proteins L2, RNA binding domain IPR022669 - Ribosomal protein L2, C-terminal IPR022671 - Ribosomal protein L2, conserved site

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

BBN69974.1 hypothetical protein Prudu_1306S000300, partial [Prunus dulcis]

3.8e-88

70.29

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Query:  MAIHLYKTSTPSTRNGAVDS-----------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG-----
        MAIHLYKTSTPSTRNGAVDS           QHRCGKGRNARGIITAGHR GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPN+   I L H   G     
Subjt:  MAIHLYKTSTPSTRNGAVDS-----------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG-----

Query:  ----WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQ--------------------PISRAAGAVAKLIAKR-K
             AIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQK+                         ++RAAGAVAKLIAK  K
Subjt:  ----WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQ--------------------PISRAAGAVAKLIAKR-K

Query:  SATLKLPSGS------------RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP
        SATLKLPSG                GN GVNQKSLG+AGSKCWLGKRPVVRGVVMNPVDHPHGGGEG +PIGRK P
Subjt:  SATLKLPSGS------------RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP

CAB4299879.1 unnamed protein product [Prunus armeniaca]

3.8e-88

70.29

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Query:  MAIHLYKTSTPSTRNGAVDS-----------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG-----
        MAIHLYKTSTPSTRNGAVDS           QHRCGKGRNARGIITAGHR GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPN+   I L H   G     
Subjt:  MAIHLYKTSTPSTRNGAVDS-----------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG-----

Query:  ----WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQ--------------------PISRAAGAVAKLIAKR-K
             AIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQK+                         ++RAAGAVAKLIAK  K
Subjt:  ----WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQ--------------------PISRAAGAVAKLIAKR-K

Query:  SATLKLPSGS------------RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP
        SATLKLPSG                GN GVNQKSLG+AGSKCWLGKRPVVRGVVMNPVDHPHGGGEG +PIGRK P
Subjt:  SATLKLPSGS------------RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP

KAG4109421.1 hypothetical protein ERO13_1Z050292v2 [Gossypium hirsutum]

3.5e-89

72.18

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Query:  MAIHLYKTSTPSTRNGAVDSQHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---------WAIIGDT
        MAIHLYKTSTP TRNGAVDSQHRCGKGRNARGIITA HR GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPN+   I L H   G          AIIGDT
Subjt:  MAIHLYKTSTPSTRNGAVDSQHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---------WAIIGDT

Query:  IVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQ---------------------PISRAAGAVAKLIAKR-KSATLKLPSGS
        IVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLID+ K  +                       ++RAAGAVAKLIAK  KSATLKLPSG 
Subjt:  IVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQ---------------------PISRAAGAVAKLIAKR-KSATLKLPSGS

Query:  ------------RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP
                       GN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEG +PIGRK P
Subjt:  ------------RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP

PLY64687.1 hypothetical protein LSAT_7X82641 [Lactuca sativa]

1.1e-87

68.79

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Query:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---
        MAIHLYKTSTPSTRNGAVDS             QH CGKGRNARGIITAGHR GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPN+   I L H   G   
Subjt:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---

Query:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKK--------------NLLQPISRAAGAVAKLIAKR-KSATL
               AIIGDTIVSGTEVPIKMGNALPLSAIS  TSRK YALE+ACTVWEG+LID+K+              N+   + +AAGA  KLIAK  KSATL
Subjt:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKK--------------NLLQPISRAAGAVAKLIAKR-KSATL

Query:  KLPSGSRTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNPQPLGVILHLEEEVEKGINIVII
        KLPS      + GVNQKSLGR GSK +LGKRPVVRGVVMNPVDHPH GGEG +PIGRK P    V LHLE+EVEK INIVII
Subjt:  KLPSGSRTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNPQPLGVILHLEEEVEKGINIVII

TQD73878.1 hypothetical protein C1H46_040580 [Malus baccata]

6.5e-88

69.78

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Query:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---
        MAIHLYKTSTPSTRNGAVDS             QHRCGKGRNARGIITAGHR GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPN+   I L H   G   
Subjt:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---

Query:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQ--------------------PISRAAGAVAKLIAKR
               AIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQK+                         ++RAAGAVAKLIAK 
Subjt:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQ--------------------PISRAAGAVAKLIAKR

Query:  -KSATLKLPSGS------------RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP
         KSATLKLPSG                GN GVNQKSLG+AGSKCWLGKRPVVRGVVMNPVDHPHGGGEG +PIGRK P
Subjt:  -KSATLKLPSGS------------RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP

TrEMBL top hits

e value

%identity

Alignment

A0A2J6JPE5 Ribosomal_L2_C domain-containing protein

5.4e-88

68.79

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---
        MAIHLYKTSTPSTRNGAVDS             QH CGKGRNARGIITAGHR GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPN+   I L H   G   
Subjt:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---

Query:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKK--------------NLLQPISRAAGAVAKLIAKR-KSATL
               AIIGDTIVSGTEVPIKMGNALPLSAIS  TSRK YALE+ACTVWEG+LID+K+              N+   + +AAGA  KLIAK  KSATL
Subjt:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKK--------------NLLQPISRAAGAVAKLIAKR-KSATL

Query:  KLPSGSRTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNPQPLGVILHLEEEVEKGINIVII
        KLPS      + GVNQKSLGR GSK +LGKRPVVRGVVMNPVDHPH GGEG +PIGRK P    V LHLE+EVEK INIVII
Subjt:  KLPSGSRTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNPQPLGVILHLEEEVEKGINIVII

A0A4Y1RG22 PREDICTED: ribosomal L2

1.9e-88

70.29

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDS-----------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG-----
        MAIHLYKTSTPSTRNGAVDS           QHRCGKGRNARGIITAGHR GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPN+   I L H   G     
Subjt:  MAIHLYKTSTPSTRNGAVDS-----------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG-----

Query:  ----WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQ--------------------PISRAAGAVAKLIAKR-K
             AIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQK+                         ++RAAGAVAKLIAK  K
Subjt:  ----WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQ--------------------PISRAAGAVAKLIAKR-K

Query:  SATLKLPSGS------------RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP
        SATLKLPSG                GN GVNQKSLG+AGSKCWLGKRPVVRGVVMNPVDHPHGGGEG +PIGRK P
Subjt:  SATLKLPSGS------------RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP

A0A540KI38 Ribosomal_L2_C domain-containing protein

3.2e-88

69.78

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Query:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---
        MAIHLYKTSTPSTRNGAVDS             QHRCGKGRNARGIITAGHR GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPN+   I L H   G   
Subjt:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---

Query:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQ--------------------PISRAAGAVAKLIAKR
               AIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQK+                         ++RAAGAVAKLIAK 
Subjt:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQ--------------------PISRAAGAVAKLIAKR

Query:  -KSATLKLPSGS------------RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP
         KSATLKLPSG                GN GVNQKSLG+AGSKCWLGKRPVVRGVVMNPVDHPHGGGEG +PIGRK P
Subjt:  -KSATLKLPSGS------------RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP

A0A5H2XTF6 Ribosomal_L2_C domain-containing protein (Fragment)

1.9e-88

70.29

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDS-----------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG-----
        MAIHLYKTSTPSTRNGAVDS           QHRCGKGRNARGIITAGHR GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPN+   I L H   G     
Subjt:  MAIHLYKTSTPSTRNGAVDS-----------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG-----

Query:  ----WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQ--------------------PISRAAGAVAKLIAKR-K
             AIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQK+                         ++RAAGAVAKLIAK  K
Subjt:  ----WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQ--------------------PISRAAGAVAKLIAKR-K

Query:  SATLKLPSGS------------RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP
        SATLKLPSG                GN GVNQKSLG+AGSKCWLGKRPVVRGVVMNPVDHPHGGGEG +PIGRK P
Subjt:  SATLKLPSGS------------RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP

A0A6J5WEB6 Ribosomal_L2_C domain-containing protein

1.9e-88

70.29

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDS-----------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG-----
        MAIHLYKTSTPSTRNGAVDS           QHRCGKGRNARGIITAGHR GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPN+   I L H   G     
Subjt:  MAIHLYKTSTPSTRNGAVDS-----------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG-----

Query:  ----WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQ--------------------PISRAAGAVAKLIAKR-K
             AIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQK+                         ++RAAGAVAKLIAK  K
Subjt:  ----WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQ--------------------PISRAAGAVAKLIAKR-K

Query:  SATLKLPSGS------------RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP
        SATLKLPSG                GN GVNQKSLG+AGSKCWLGKRPVVRGVVMNPVDHPHGGGEG +PIGRK P
Subjt:  SATLKLPSGS------------RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP

SwissProt top hits

e value

%identity

Alignment

P18663 50S ribosomal protein L2-A, chloroplastic

2.1e-73

64.73

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---
        MAIHLYKTSTPSTRNGAVDS             QHRCGKGRNARGIITAGHR GGHKRLYRKIDFRRNEK+IYGRIVTIEYDPN+   I L H   G   
Subjt:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---

Query:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQPISRAAGAVAKLIAKR-KSATLKLPSGS--------
               AIIGDTIVSGTEVPIKMGNALPL+ +   T+     +    T+ +G            ++RAAGAVAKLIAK  KSATLKLPSG         
Subjt:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQPISRAAGAVAKLIAKR-KSATLKLPSGS--------

Query:  ----RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP
               GN GVNQK+LGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEG +PIGRK P
Subjt:  ----RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP

P21434 50S ribosomal protein L2, chloroplastic

2.9e-78

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---
        MAIHLYKTSTPSTRNG VDS             QH CGKGRNARGIITA HR GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPN+   I L H   G   
Subjt:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---

Query:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQPISRAAGAVAKLIAKR-KSATLKLPSGSRTS-----
               AIIGDTIVSGTEVPIKMGNALPL+ +   T+     +    T+ +G            ++RAAGAVAKLIAK  KSATLKLPSG   S     
Subjt:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQPISRAAGAVAKLIAKR-KSATLKLPSGSRTS-----

Query:  -------GNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNPQPLGVILHLEEEVEKGINIVII
               GN GVNQKSLGRAGSK WLGKRPVVRGVVMNPVDHP G  +GE  +  KNPQPLGVILHLEEEVEKGINIVII
Subjt:  -------GNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNPQPLGVILHLEEEVEKGINIVII

Q09MB2 50S ribosomal protein L2, chloroplastic

7.3e-74

65.12

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Query:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---
        MAIHLYKTSTPSTRNGAVDS             QHRCGKGRNARGIITAGHR GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPN+   I L H   G   
Subjt:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---

Query:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQPISRAAGAVAKLIAKR-KSATLKLPSGS--------
               AIIGDTIVSGTEVPIKMGNALPL+ +   T+     +    T+ +G            ++RAAGAVAKLIAK  KSATLKLPSG         
Subjt:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQPISRAAGAVAKLIAKR-KSATLKLPSGS--------

Query:  ----RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP
               GN G NQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEG +PIGRK P
Subjt:  ----RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP

Q2PMM3 50S ribosomal protein L2-B, chloroplastic

9.5e-74

65.12

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---
        MAIHLYKTSTPSTRNGAVDS             QHRCGKGRNARGIITAGHR GGHKRLYRKIDFRRNEK+IYGRIVTIEYDPN+   I L H   G   
Subjt:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---

Query:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQPISRAAGAVAKLIAKR-KSATLKLPSGS--------
               AIIGDTIVSGTEVPIKMGNALPLS +   T+     +    T+ +G            ++RAAGAVAKLIAK  KSATLKLPSG         
Subjt:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQPISRAAGAVAKLIAKR-KSATLKLPSGS--------

Query:  ----RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP
               GN GVNQK+LGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEG +PIGRK P
Subjt:  ----RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP

Q4VZK5 50S ribosomal protein L2, chloroplastic

8.6e-75

65.89

Show/hide

Query:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---
        MAIHLYKTSTPSTRNGAVDS             QHRCGKGRNARGIITAGHR GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPN+   I L H   G   
Subjt:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---

Query:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQPISRAAGAVAKLIAKR-KSATLKLPSGS--------
               AIIGDTIVSGTEVPIKMGNALPL+ +   T+     +    T+ +G            ++RAAGAVAKLIAK  KSATLKLPSG         
Subjt:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQPISRAAGAVAKLIAKR-KSATLKLPSGS--------

Query:  ----RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP
               GNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEG +PIGRK P
Subjt:  ----RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP

Arabidopsis top hits

e value

%identity

Alignment

AT2G44065.1 Ribosomal protein L2 family

6.9e-11

Show/hide

Query:  RAAGAVAKLIAK--RKSATLKLPSGSR------------TSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPI----GRKNPQPLG
        RAAG  AK++ +  +    +KLPSG              T  N     K L +AG   WLG RP VRGV MNP DHPHGGGEG+S      GR +  P G
Subjt:  RAAGAVAKLIAK--RKSATLKLPSGSR------------TSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPI----GRKNPQPLG

AT2G44065.2 Ribosomal protein L2 family

6.9e-11

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Query:  RAAGAVAKLIAK--RKSATLKLPSGSR------------TSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPI----GRKNPQPLG
        RAAG  AK++ +  +    +KLPSG              T  N     K L +AG   WLG RP VRGV MNP DHPHGGGEG+S      GR +  P G
Subjt:  RAAGAVAKLIAK--RKSATLKLPSGSR------------TSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPI----GRKNPQPLG

AT3G51190.1 Ribosomal protein L2 family

3.9e-06

31.08

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Query:  GDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQPISRAAGAVAKLIA---KRKSATLKLPSGSR------------TSG
        G  +  G +  + +GN LPL +I            E   +    L    +  L   +RA+G  A +IA   +  +  +KLPSGS+               
Subjt:  GDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQPISRAAGAVAKLIA---KRKSATLKLPSGSR------------TSG

Query:  NAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG
          G  +K L +AG+          CW    PVVRGV MNPV+HPHGGG
Subjt:  NAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG

ATCG00830.1 ribosomal protein L2

3.7e-73

64.34

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Query:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---
        MAIHLYKTSTPSTRNGAVDS             QH CGKGRNARGIITA HR GGHKRLYRKIDFRRN KDIYGRIVTIEYDPN+   I L H   G   
Subjt:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---

Query:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQPISRAAGAVAKLIAKR-KSATLKLPSGS--------
               AIIGDTIVSGTEVPIKMGNALPL+ +   T+     +    T+  G            ++RAAGAVAKLIAK  KSATLKLPSG         
Subjt:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQPISRAAGAVAKLIAKR-KSATLKLPSGS--------

Query:  ----RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP
               GN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEG +PIGRK P
Subjt:  ----RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP

ATCG01310.1 ribosomal protein L2

3.7e-73

64.34

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Query:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---
        MAIHLYKTSTPSTRNGAVDS             QH CGKGRNARGIITA HR GGHKRLYRKIDFRRN KDIYGRIVTIEYDPN+   I L H   G   
Subjt:  MAIHLYKTSTPSTRNGAVDS-------------QHRCGKGRNARGIITAGHR-GGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKC-IHLSHTLWG---

Query:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQPISRAAGAVAKLIAKR-KSATLKLPSGS--------
               AIIGDTIVSGTEVPIKMGNALPL+ +   T+     +    T+  G            ++RAAGAVAKLIAK  KSATLKLPSG         
Subjt:  ------WAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKKNLLQPISRAAGAVAKLIAKR-KSATLKLPSGS--------

Query:  ----RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP
               GN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEG +PIGRK P
Subjt:  ----RTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKNP

Sequences

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CDS sequence

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ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAACATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGG
GCATAGAGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCAGAAATGCA
TACATTTGTCTCATACACTATGGGGATGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCAATATCA
TCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAGAAGAATCTACTTCAACCGATATCTAGAGCAGCAGG
TGCTGTAGCGAAACTGATTGCAAAGAGGAAATCAGCCACATTAAAATTACCTTCTGGGAGTCGGACAAGTGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCG
GATCTAAGTGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGAGAGAGCCCAATTGGTAGAAAAAAC
CCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGA

mRNA sequence

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Protein sequence

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MAIHLYKTSTPSTRNGAVDSQHRCGKGRNARGIITAGHRGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNQKCIHLSHTLWGWAIIGDTIVSGTEVPIKMGNALPLSAIS
SSTSRKPYALEEACTVWEGVLIDQKKNLLQPISRAAGAVAKLIAKRKSATLKLPSGSRTSGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGESPIGRKN
PQPLGVILHLEEEVEKGINIVII

Sed0002965 (gene) of Chayote v1 genome