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Sed0002995 (gene) of Chayote v1 genome

Gene IDSed0002995
OrganismSechium edule (Chayote v1)
DescriptionTrafficking protein particle complex subunit 2-like
Genome locationLG01:140770..144106
RNA-Seq ExpressionSed0002995
SyntenySed0002995
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0030008 - TRAPP complex (cellular component)
InterPro domainsIPR006722 - Trafficking protein particle complex subunit 2
IPR011012 - Longin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF49237.1 mbp-1 interacting protein-2a, putative [Ricinus communis]2.0e-2474.68Show/hide
Query:  QVNMQKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYTILNPLYLPGSCITSSHFDTKVRALARKYL
        ++++ ++ED+AQL QFILHA+LDI QDLAWTT+AMFLKS+D+FNDL+   +LNPLYLPGS ITSSHFDTKVRALARKYL
Subjt:  QVNMQKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYTILNPLYLPGSCITSSHFDTKVRALARKYL

GER27430.1 trafficking protein particle complex protein 2 [Striga asiatica]2.0e-2464.13Show/hide
Query:  IVGSKNLSFFQV---NMQKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYTILNPLYLPGSCITSSHFDTKVRALARKYL
        IV   ++  ++     + K+ED+A   QFILHA+LDI QD+AWTT+AMFLK++DRFND+V  ++LNPLYLPGS ITSSHFDTKVRALARKYL
Subjt:  IVGSKNLSFFQV---NMQKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYTILNPLYLPGSCITSSHFDTKVRALARKYL

KAG2302278.1 hypothetical protein Bca52824_030929 [Brassica carinata]7.9e-2682.89Show/hide
Query:  KREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLV--AYTILNPLYLPGSCITSSHFDTKVRALARKYL
        KRED+AQL QFILHA+LD+ QDLAWTT+AMFLKSVDRFNDLV   Y +LNPLYLPGS ITS+HFDTKVRALARKYL
Subjt:  KREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLV--AYTILNPLYLPGSCITSSHFDTKVRALARKYL

OMO87961.1 Sedlin [Corchorus capsularis]2.5e-2481.08Show/hide
Query:  KREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYTILNPLYLPGSCITSSHFDTKVRALARKYL
        KRED+AQL QF+LHA+LDI QDLAWTT+AMFLK++DRFNDLV   +LNPLYLPGS I SSHFDTKVRALARKYL
Subjt:  KREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYTILNPLYLPGSCITSSHFDTKVRALARKYL

RYR44706.1 hypothetical protein Ahy_A08g040993 isoform D [Arachis hypogaea]4.2e-2786.49Show/hide
Query:  KREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYTILNPLYLPGSCITSSHFDTKVRALARKYL
        KRED+AQL QFILHA+LDI QDLAWTT+AM+LKSVDRFNDLV  T+LNPLYLPGS ITSSHFDTKVRALARKYL
Subjt:  KREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYTILNPLYLPGSCITSSHFDTKVRALARKYL

TrEMBL top hitse value%identityAlignment
A0A1R3IZF9 Sedlin1.2e-2481.08Show/hide
Query:  KREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYTILNPLYLPGSCITSSHFDTKVRALARKYL
        KRED+AQL QF+LHA+LDI QDLAWTT+AMFLK++DRFNDLV   +LNPLYLPGS I SSHFDTKVRALARKYL
Subjt:  KREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYTILNPLYLPGSCITSSHFDTKVRALARKYL

A0A371FKL1 Trs203.6e-2472.09Show/hide
Query:  KREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVA------------YTILNPLYLPGSCITSSHFDTKVRALARKYL
        KRED+AQL QFILHA+LDI QDLAWTT+AM+LKSVDRFN+LV              T+LNPLYLPGS +TSSHFDTKVRALARKYL
Subjt:  KREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVA------------YTILNPLYLPGSCITSSHFDTKVRALARKYL

A0A445C1A0 Uncharacterized protein2.0e-2786.49Show/hide
Query:  KREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYTILNPLYLPGSCITSSHFDTKVRALARKYL
        KRED+AQL QFILHA+LDI QDLAWTT+AM+LKSVDRFNDLV  T+LNPLYLPGS ITSSHFDTKVRALARKYL
Subjt:  KREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYTILNPLYLPGSCITSSHFDTKVRALARKYL

A0A5A7P3Y7 Trafficking protein particle complex protein 29.4e-2564.13Show/hide
Query:  IVGSKNLSFFQV---NMQKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYTILNPLYLPGSCITSSHFDTKVRALARKYL
        IV   ++  ++     + K+ED+A   QFILHA+LDI QD+AWTT+AMFLK++DRFND+V  ++LNPLYLPGS ITSSHFDTKVRALARKYL
Subjt:  IVGSKNLSFFQV---NMQKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYTILNPLYLPGSCITSSHFDTKVRALARKYL

B9RGM5 Mbp-1 interacting protein-2a, putative9.4e-2574.68Show/hide
Query:  QVNMQKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYTILNPLYLPGSCITSSHFDTKVRALARKYL
        ++++ ++ED+AQL QFILHA+LDI QDLAWTT+AMFLKS+D+FNDL+   +LNPLYLPGS ITSSHFDTKVRALARKYL
Subjt:  QVNMQKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYTILNPLYLPGSCITSSHFDTKVRALARKYL

SwissProt top hitse value%identityAlignment
E2QV03 Trafficking protein particle complex subunit 25.0e-0730.91Show/hide
Query:  QKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFN-----------------------------------DLVAYTILNPLYLPGSCITSSHFDT
        + ++D   L QFI HA+LD+  +  W +  M+LK+VD+FN                                   DL     +NP Y P S I SS FD 
Subjt:  QKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFN-----------------------------------DLVAYTILNPLYLPGSCITSSHFDT

Query:  KVRALARKYL
        KV+ L +K+L
Subjt:  KVRALARKYL

F1SRI0 Trafficking protein particle complex subunit 25.0e-0730.91Show/hide
Query:  QKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFN-----------------------------------DLVAYTILNPLYLPGSCITSSHFDT
        + ++D   L QFI HA+LD+  +  W +  M+LK+VD+FN                                   DL     +NP Y P S I SS FD 
Subjt:  QKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFN-----------------------------------DLVAYTILNPLYLPGSCITSSHFDT

Query:  KVRALARKYL
        KV+ L +K+L
Subjt:  KVRALARKYL

Q3T0F2 Trafficking protein particle complex subunit 25.0e-0730.91Show/hide
Query:  QKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFN-----------------------------------DLVAYTILNPLYLPGSCITSSHFDT
        + ++D   L QFI HA+LD+  +  W +  M+LK+VD+FN                                   DL     +NP Y P S I SS FD 
Subjt:  QKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFN-----------------------------------DLVAYTILNPLYLPGSCITSSHFDT

Query:  KVRALARKYL
        KV+ L +K+L
Subjt:  KVRALARKYL

Q9CQP2 Trafficking protein particle complex subunit 25.0e-0730.91Show/hide
Query:  QKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFN-----------------------------------DLVAYTILNPLYLPGSCITSSHFDT
        + ++D   L QFI HA+LD+  +  W +  M+LK+VD+FN                                   DL     +NP Y P S I SS FD 
Subjt:  QKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFN-----------------------------------DLVAYTILNPLYLPGSCITSSHFDT

Query:  KVRALARKYL
        KV+ L +K+L
Subjt:  KVRALARKYL

Q9USZ5 Transport protein particle 20 kDa subunit9.1e-0929.23Show/hide
Query:  IVGSKNLSFFQVNM------QKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLV--AY---------------------------------
        I+G+K+   +++ M        R  ++ L QFI+H+SLDI   L WT+ A ++K++D+F+++   AY                                 
Subjt:  IVGSKNLSFFQVNM------QKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLV--AY---------------------------------

Query:  TILNPLYLPGSCITSSHFDTKVRALARKYL
        T+++P Y P   I S  FD KVR++AR+YL
Subjt:  TILNPLYLPGSCITSSHFDTKVRALARKYL

Arabidopsis top hitse value%identityAlignment
AT1G80500.1 SNARE-like superfamily protein4.9e-2651.97Show/hide
Query:  IVGSKNLSFFQVNM---QKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYT-----------------------------------IL
        IVG  ++  ++  +    KRED+AQL QFILHA+LD+ QDLAWTT+AMFLKSVDRFNDLV                                      +L
Subjt:  IVGSKNLSFFQVNM---QKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYT-----------------------------------IL

Query:  NPLYLPGSCITSSHFDTKVRALARKYL
        NPLYLPGS ITSSHFDTKVRALARKYL
Subjt:  NPLYLPGSCITSSHFDTKVRALARKYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGAGGCATTGTAGGAAGTAAAAATCTATCTTTCTTTCAAGTAAACATGCAAAAAAGGGAGGATTCTGCTCAGCTGCGCCAGTTTATACTGCACGCTTCCCTTGA
CATTGCTCAAGACCTCGCATGGACTACTACTGCTATGTTCTTGAAATCAGTCGATAGATTCAATGATCTGGTGGCCTATACTATACTCAATCCCCTCTACTTGCCTGGAT
CCTGCATCACATCTTCACATTTCGACACAAAAGTTCGTGCACTTGCAAGGAAGTATCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAGAGGCATTGTAGGAAGTAAAAATCTATCTTTCTTTCAAGTAAACATGCAAAAAAGGGAGGATTCTGCTCAGCTGCGCCAGTTTATACTGCACGCTTCCCTTGA
CATTGCTCAAGACCTCGCATGGACTACTACTGCTATGTTCTTGAAATCAGTCGATAGATTCAATGATCTGGTGGCCTATACTATACTCAATCCCCTCTACTTGCCTGGAT
CCTGCATCACATCTTCACATTTCGACACAAAAGTTCGTGCACTTGCAAGGAAGTATCTCTAG
Protein sequenceShow/hide protein sequence
MKRGIVGSKNLSFFQVNMQKREDSAQLRQFILHASLDIAQDLAWTTTAMFLKSVDRFNDLVAYTILNPLYLPGSCITSSHFDTKVRALARKYL