; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0003002 (gene) of Chayote v1 genome

Gene IDSed0003002
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG06:26129320..26142734
RNA-Seq ExpressionSed0003002
SyntenySed0003002
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.5e-3238.85Show/hide
Query:  EASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWI-------------------------------
        +ASTS   S  L DEK    PIL YVP+SR KKGE+PF +  + LKVGDIEVL+ESFTTP TK+ KQ I                               
Subjt:  EASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWI-------------------------------

Query:  -------------------------TLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAFQR
                                  L++G+A+P SRKGLGYKS EP+RITR+ K KV D NHIT++EV+  KE +  G    AF RI P  +R   F+R
Subjt:  -------------------------TLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAFQR

Query:  LGTSKRKENKMPATTNETQLPIFERL----NKAMGEARTFSTSGGARPSAFQRLIKPKRK
        L  ++ +     +T+N  +   F+RL     K  G  + + T+   RPSAF+RL   K+K
Subjt:  LGTSKRKENKMPATTNETQLPIFERL----NKAMGEARTFSTSGGARPSAFQRLIKPKRK

KAA0051585.1 uncharacterized protein E6C27_scaffold174G001280 [Cucumis melo var. makuwa]1.2e-3237Show/hide
Query:  KIEASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWI-----------------------------
        K EAST+   S  L DEK    PIL YVP+SRRKKGE+PF E  + LKVG+IEVL+ESFTTPLTK+ KQ I                             
Subjt:  KIEASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWI-----------------------------

Query:  ---------------------------TLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAF
                                    L++G+ +P SRKGLGYKS EP+RITR+ K KV D+NHIT++E +  +E +       AF RI P  +R   F
Subjt:  ---------------------------TLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAF

Query:  QRLGTSKRKENKMPATTNETQLPIFERLNKAMGEARTF-STSGGARPSAFQRLIKPKRKIENT--SPTTDKIR
        ++L  ++ +     +T+N  +   F+RL     E +    TS   +PSAF+RL   K+K   T  +P  +++R
Subjt:  QRLGTSKRKENKMPATTNETQLPIFERLNKAMGEARTF-STSGGARPSAFQRLIKPKRKIENT--SPTTDKIR

KAA0062018.1 uncharacterized protein E6C27_scaffold89G003490 [Cucumis melo var. makuwa]1.0e-3140.17Show/hide
Query:  KIEASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWI-----------------------------
        K EASTS   S  L DEK    PILCYVP+SRRKKGE+PF E S+ LKVGDIEVL+ESFTTPLTK+ KQ I                             
Subjt:  KIEASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWI-----------------------------

Query:  ---------------------------TLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAF
                                    L++G+A+P SRKGLGYK  EP+RITR+ K K+ D+NHI ++EV+  +E +       AF RI P  +R   F
Subjt:  ---------------------------TLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAF

Query:  QRLGTSKRKENKMPATTNETQLPIFERLN
        +RL   + +     +T+N  +   FERL+
Subjt:  QRLGTSKRKENKMPATTNETQLPIFERLN

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]6.5e-3136.68Show/hide
Query:  KIEASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWI-----------------------------
        K EA TS      LKDE    +P+L YVP+SRRKKGE+PF E  K LKVGDIE+++ESFTTPLTK+ KQ +                             
Subjt:  KIEASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWI-----------------------------

Query:  ---------------------------TLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAF
                                    L++G+++P SRKGLGYKS EP+RIT++ K KV D NHITIEE + +   +     +  F RI PS +R   F
Subjt:  ---------------------------TLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAF

Query:  QRLGTSKRKENKMPATTNETQLPIFERLNKA-MGEARTFSTSGGARPSAFQRLIKPKRK
        +RL  ++ +  ++ +  N  +  +F RL    + E  T       RPSAF+RL   K+K
Subjt:  QRLGTSKRKENKMPATTNETQLPIFERLNKA-MGEARTFSTSGGARPSAFQRLIKPKRK

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]6.5e-3136.68Show/hide
Query:  KIEASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWI-----------------------------
        K EA TS      LKDE    +P+L YVP+SRRKKGE+PF E  K LKVGDIE+++ESFTTPLTK+ KQ +                             
Subjt:  KIEASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWI-----------------------------

Query:  ---------------------------TLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAF
                                    L++G+++P SRKGLGYKS EP+RIT++ K KV D NHITIEE + +   +     +  F RI PS +R   F
Subjt:  ---------------------------TLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAF

Query:  QRLGTSKRKENKMPATTNETQLPIFERLNKA-MGEARTFSTSGGARPSAFQRLIKPKRK
        +RL  ++ +  ++ +  N  +  +F RL    + E  T       RPSAF+RL   K+K
Subjt:  QRLGTSKRKENKMPATTNETQLPIFERLNKA-MGEARTFSTSGGARPSAFQRLIKPKRK

TrEMBL top hitse value%identityAlignment
A0A5A7TJZ7 Retrotransposon gag protein2.2e-3238.85Show/hide
Query:  EASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWI-------------------------------
        +ASTS   S  L DEK    PIL YVP+SR KKGE+PF +  + LKVGDIEVL+ESFTTP TK+ KQ I                               
Subjt:  EASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWI-------------------------------

Query:  -------------------------TLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAFQR
                                  L++G+A+P SRKGLGYKS EP+RITR+ K KV D NHIT++EV+  KE +  G    AF RI P  +R   F+R
Subjt:  -------------------------TLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAFQR

Query:  LGTSKRKENKMPATTNETQLPIFERL----NKAMGEARTFSTSGGARPSAFQRLIKPKRK
        L  ++ +     +T+N  +   F+RL     K  G  + + T+   RPSAF+RL   K+K
Subjt:  LGTSKRKENKMPATTNETQLPIFERL----NKAMGEARTFSTSGGARPSAFQRLIKPKRK

A0A5A7UD46 Uncharacterized protein5.8e-3337Show/hide
Query:  KIEASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWI-----------------------------
        K EAST+   S  L DEK    PIL YVP+SRRKKGE+PF E  + LKVG+IEVL+ESFTTPLTK+ KQ I                             
Subjt:  KIEASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWI-----------------------------

Query:  ---------------------------TLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAF
                                    L++G+ +P SRKGLGYKS EP+RITR+ K KV D+NHIT++E +  +E +       AF RI P  +R   F
Subjt:  ---------------------------TLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAF

Query:  QRLGTSKRKENKMPATTNETQLPIFERLNKAMGEARTF-STSGGARPSAFQRLIKPKRKIENT--SPTTDKIR
        ++L  ++ +     +T+N  +   F+RL     E +    TS   +PSAF+RL   K+K   T  +P  +++R
Subjt:  QRLGTSKRKENKMPATTNETQLPIFERLNKAMGEARTF-STSGGARPSAFQRLIKPKRKIENT--SPTTDKIR

A0A5A7V356 Uncharacterized protein4.9e-3240.17Show/hide
Query:  KIEASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWI-----------------------------
        K EASTS   S  L DEK    PILCYVP+SRRKKGE+PF E S+ LKVGDIEVL+ESFTTPLTK+ KQ I                             
Subjt:  KIEASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWI-----------------------------

Query:  ---------------------------TLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAF
                                    L++G+A+P SRKGLGYK  EP+RITR+ K K+ D+NHI ++EV+  +E +       AF RI P  +R   F
Subjt:  ---------------------------TLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAF

Query:  QRLGTSKRKENKMPATTNETQLPIFERLN
        +RL   + +     +T+N  +   FERL+
Subjt:  QRLGTSKRKENKMPATTNETQLPIFERLN

A0A5D3C0W6 Ty3-gypsy retrotransposon protein1.2e-3039.74Show/hide
Query:  KIEASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWI-----------------------------
        K EASTS   S  L DEK     IL YVP+SRRKKGE+PF E  + LKVGDIEVL+ESFTTPLTK+ KQ I                             
Subjt:  KIEASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWI-----------------------------

Query:  ---------------------------TLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAF
                                    L++G+A+P SRKGLGYK  EP+RITR+ K K+ D+NHIT++EV+  KE +       AF RI P  +R   F
Subjt:  ---------------------------TLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAF

Query:  QRLGTSKRKENKMPATTNETQLPIFERLN
        +RL  ++ +     +T+N  +   FERL+
Subjt:  QRLGTSKRKENKMPATTNETQLPIFERLN

A0A5D3C8N8 Ribonuclease H2.0e-3043.48Show/hide
Query:  KIEASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWITLKKGYALPTSRKGLGYKSSEPVRITRRE
        K EASTS   S  L +E     PIL YVP+SR KKGE+PF E  + LKVGDIEVL+ESFT  LTK+ K               KGLGYKS EP+RITR+ 
Subjt:  KIEASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQWITLKKGYALPTSRKGLGYKSSEPVRITRRE

Query:  KAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAFQRLGTSKRKENKMPATTNETQLPIFERLNKAMGEARTF-STSGGARPSAFQRLIKP
        K KV D+NHIT++EV+  +  +       AF RI P  +R   F+RL  ++ K     +T+N  +   F+RL     E +     S   +PSAF+RL   
Subjt:  KAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAFQRLGTSKRKENKMPATTNETQLPIFERLNKAMGEARTF-STSGGARPSAFQRLIKP

Query:  KRKIENT
        K+K   T
Subjt:  KRKIENT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGAAAAGCCACATCAAAGACCAGCAATGGACCTCAAGTAACACCATATGCGATAGCAAAAAGAATTGTAGGACTACTAGAGGGGACCTCTGATGAAATCACCGT
CAAAGATAACCCATTGTTTGACCAAGTCAGTCCTAGCGTTGATCAACCAAAGGAGACGTCTAATCCTGATGTGATGTCTGTTATGATGGCTGGAAAAGATGAAGTGATAG
ACATTGCTACATGTCATGCAGTTTGCACAAGTGATGACTCAGCGAGCTCTTCAAAAGCTGTCATTGAGCCTAAAGCTACGTCTTCCTTTAACATAGAGGATTTGACATCA
CTCCCTCAAGCAGACAAAAGCTCTCTTATTGAGGCATTGTTAGACTCAAATACTAAGCTAAAACCAGAGGCCGACATAAAAAAGAAATGGGTAGTGAGAGAAGAAAAGTC
ATGCCTAGTAAAGATAGAGGCTTCAACGAGTCTAGTAGCTTCTAAGGCTCTAAAAGATGAGAAACTTCCAACTTCACCCATCTTATGCTATGTCCCTATATCCCGACGAA
AAAAGGGTGAAGCACCTTTCACCGAATGTTCTAAAAATTTGAAAGTAGGTGATATTGAAGTATTGAGGGAAAGTTTCACCACTCCTTTGACAAAGATGAAAAAGCAATGG
ATCACATTGAAGAAAGGTTACGCTCTACCAACGTCAAGAAAAGGACTCGGATATAAGTCATCTGAACCAGTTCGCATAACAAGAAGAGAGAAGGCAAAGGTGGAAGATGC
CAACCACATAACCATTGAAGAGGTTGAAGAATCAAAGGAAAATAAGAATGTTGGTCATTGGGTACCTGCCTTTAAACGCATTGGACCATCAACATCTCGTGTTTCAGCGT
TTCAAAGGTTAGGTACGTCAAAAAGAAAAGAGAATAAAATGCCTGCTACCACCAATGAGACACAATTACCTATTTTTGAAAGATTGAATAAAGCCATGGGAGAGGCGAGA
ACATTCTCGACTTCAGGTGGAGCACGACCATCCGCCTTTCAAAGGTTAATTAAGCCGAAAAGAAAAATAGAAAATACAAGTCCAACTACTGATAAGATCCGACCGTCGGC
TTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGAAAAGCCACATCAAAGACCAGCAATGGACCTCAAGTAACACCATATGCGATAGCAAAAAGAATTGTAGGACTACTAGAGGGGACCTCTGATGAAATCACCGT
CAAAGATAACCCATTGTTTGACCAAGTCAGTCCTAGCGTTGATCAACCAAAGGAGACGTCTAATCCTGATGTGATGTCTGTTATGATGGCTGGAAAAGATGAAGTGATAG
ACATTGCTACATGTCATGCAGTTTGCACAAGTGATGACTCAGCGAGCTCTTCAAAAGCTGTCATTGAGCCTAAAGCTACGTCTTCCTTTAACATAGAGGATTTGACATCA
CTCCCTCAAGCAGACAAAAGCTCTCTTATTGAGGCATTGTTAGACTCAAATACTAAGCTAAAACCAGAGGCCGACATAAAAAAGAAATGGGTAGTGAGAGAAGAAAAGTC
ATGCCTAGTAAAGATAGAGGCTTCAACGAGTCTAGTAGCTTCTAAGGCTCTAAAAGATGAGAAACTTCCAACTTCACCCATCTTATGCTATGTCCCTATATCCCGACGAA
AAAAGGGTGAAGCACCTTTCACCGAATGTTCTAAAAATTTGAAAGTAGGTGATATTGAAGTATTGAGGGAAAGTTTCACCACTCCTTTGACAAAGATGAAAAAGCAATGG
ATCACATTGAAGAAAGGTTACGCTCTACCAACGTCAAGAAAAGGACTCGGATATAAGTCATCTGAACCAGTTCGCATAACAAGAAGAGAGAAGGCAAAGGTGGAAGATGC
CAACCACATAACCATTGAAGAGGTTGAAGAATCAAAGGAAAATAAGAATGTTGGTCATTGGGTACCTGCCTTTAAACGCATTGGACCATCAACATCTCGTGTTTCAGCGT
TTCAAAGGTTAGGTACGTCAAAAAGAAAAGAGAATAAAATGCCTGCTACCACCAATGAGACACAATTACCTATTTTTGAAAGATTGAATAAAGCCATGGGAGAGGCGAGA
ACATTCTCGACTTCAGGTGGAGCACGACCATCCGCCTTTCAAAGGTTAATTAAGCCGAAAAGAAAAATAGAAAATACAAGTCCAACTACTGATAAGATCCGACCGTCGGC
TTTTTAA
Protein sequenceShow/hide protein sequence
MSGKATSKTSNGPQVTPYAIAKRIVGLLEGTSDEITVKDNPLFDQVSPSVDQPKETSNPDVMSVMMAGKDEVIDIATCHAVCTSDDSASSSKAVIEPKATSSFNIEDLTS
LPQADKSSLIEALLDSNTKLKPEADIKKKWVVREEKSCLVKIEASTSLVASKALKDEKLPTSPILCYVPISRRKKGEAPFTECSKNLKVGDIEVLRESFTTPLTKMKKQW
ITLKKGYALPTSRKGLGYKSSEPVRITRREKAKVEDANHITIEEVEESKENKNVGHWVPAFKRIGPSTSRVSAFQRLGTSKRKENKMPATTNETQLPIFERLNKAMGEAR
TFSTSGGARPSAFQRLIKPKRKIENTSPTTDKIRPSAF