; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0003004 (gene) of Chayote v1 genome

Gene IDSed0003004
OrganismSechium edule (Chayote v1)
DescriptionRibosome biogenesis protein
Genome locationLG14:24658558..24661107
RNA-Seq ExpressionSed0003004
SyntenySed0003004
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0030686 - 90S preribosome (cellular component)
GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domainsIPR028160 - Ribosome biogenesis protein Slx9-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589685.1 hypothetical protein SDJN03_15108, partial [Cucurbita argyrosperma subsp. sororia]9.3e-5981.76Show/hide
Query:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQMH
        MGKP S SDSKS AERKFEKK+ FY+RVG+T+A+LNAQKTITK K  RRKRDLKAFDL+ LSEFLPGLK PK+KTS   ELKVNCKSRLKF+LKETKQM 
Subjt:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQMH

Query:  TVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM
        TVLNHP FQADPLGAI LHLESTQPVEE K+KKT NRNGSKKRKEKK K TA+PSSMEM
Subjt:  TVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM
XP_022922102.1 putative ribosome biogenesis protein slx9-like [Cucurbita moschata]5.4e-5981.76Show/hide
Query:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQMH
        MGKP S SDSKS AERKFEKK+ FY+RVG+T+A+LNAQKTITKKK  RRKRDLKAFDL+ LSEFLPGLK PK+KTS   ELKVNCKSRLKF+LKETKQM 
Subjt:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQMH

Query:  TVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM
        TVLNHP FQADPLGAI LHL+STQPVEE K+KKT NRNGSKKRKEKK K TA+PSSMEM
Subjt:  TVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM
XP_022987345.1 putative ribosome biogenesis protein slx9-like [Cucurbita maxima]1.9e-5982.39Show/hide
Query:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQMH
        MGKP S SDSKS AERKFEKK+ FY+RVG+T+A+LNAQKTITKKK  RRKRDLKAFDL+ LSEFLPGLK PK+KTS   ELKVNCKSRLKF+LKETKQM 
Subjt:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQMH

Query:  TVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM
        TVLNHP FQADPLGAI LHLESTQPVEE K+KKT NRNGSKKRKEKK K TA+PSSMEM
Subjt:  TVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM
XP_023515417.1 putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo]2.9e-6083.02Show/hide
Query:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQMH
        MGKP S SDSKS AERKFEKK+ FY+RVG+T+A+LNAQKTITKKK  RRKRDLKAFDL+ LSEFLPGLK PK+KTS   ELKVNCKSRLKF+LKETKQM 
Subjt:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQMH

Query:  TVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM
        TVLNHP FQADPLGAI LHLESTQPVEEPK+KKT NRNGSKKRKEKK K TA+PSSMEM
Subjt:  TVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM
XP_038900086.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida]5.6e-5680Show/hide
Query:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKT-CRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQM
        MGKPVS SDSKS AERKFEKKV FY+RVG+T+++LNAQKTITKKK+  RRKRDLKAFDLSTLSEFLPGL+ PK+K S AAELK+NCKSRLKFILKE KQM
Subjt:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKT-CRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQM

Query:  HTVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM
         TVLNHPVFQADPL AI+LHLE TQP+EEPK+K   N+NGSKKRKEKK K + RPSSMEM
Subjt:  HTVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM
TrEMBL top hitse value%identityAlignment
A0A0A0L113 Uncharacterized protein1.5e-5478.12Show/hide
Query:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKT-CRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQM
        MGKPVS SD KS AERKFEKKV FY+RVG+T+ +LNAQK+ITKKK   RRKRDLKAFDLSTLSEFLPGL+  K+K S AAELK+NCKSRLKFILKE KQM
Subjt:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKT-CRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQM

Query:  HTVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM
         TVLNHPVFQADPL A++LHLE TQP+EEPK+KK  N+NGSKKRKEKK K +A+PSSMEM
Subjt:  HTVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM
A0A5D3BQL6 Putative ribosome biogenesis protein slx9-like3.0e-5579.38Show/hide
Query:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKT-CRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQM
        MGKPVS SD KS AERKFEKKV FY+RVG+++A+LNAQK+ITKKK   RRKRDLKAFDLSTLSEFLPGL+  K+K S AAELK+NCKSRLKFILKE KQM
Subjt:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKT-CRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQM

Query:  HTVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM
         TVLNHPVFQADPL A++LHLE TQP EEPK+KK  N+NGSKKRKEKKLK +ARPSSMEM
Subjt:  HTVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM
A0A6J1CZB1 putative ribosome biogenesis protein slx9-like isoform X21.8e-5277.22Show/hide
Query:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCR-RKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQM
        MGKPVS SDSKS AERKF+KKV FY+RVG+TV +LNAQKTI+K    R RK+ LKAFDL+TLSEFLPGL+ PK+K S+AAELKVNCKSRLKFILKE KQM
Subjt:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCR-RKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQM

Query:  HTVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSM
         TVLNHP FQADPL AI LHLESTQPVEEPK+K T N+NGSKKRKEKKLK +A P  M
Subjt:  HTVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSM
A0A6J1E5M8 putative ribosome biogenesis protein slx9-like2.6e-5981.76Show/hide
Query:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQMH
        MGKP S SDSKS AERKFEKK+ FY+RVG+T+A+LNAQKTITKKK  RRKRDLKAFDL+ LSEFLPGLK PK+KTS   ELKVNCKSRLKF+LKETKQM 
Subjt:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQMH

Query:  TVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM
        TVLNHP FQADPLGAI LHL+STQPVEE K+KKT NRNGSKKRKEKK K TA+PSSMEM
Subjt:  TVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM
A0A6J1JDX4 putative ribosome biogenesis protein slx9-like9.1e-6082.39Show/hide
Query:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQMH
        MGKP S SDSKS AERKFEKK+ FY+RVG+T+A+LNAQKTITKKK  RRKRDLKAFDL+ LSEFLPGLK PK+KTS   ELKVNCKSRLKF+LKETKQM 
Subjt:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQMH

Query:  TVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM
        TVLNHP FQADPLGAI LHLESTQPVEE K+KKT NRNGSKKRKEKK K TA+PSSMEM
Subjt:  TVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01640.1 unknown protein5.5e-3353.33Show/hide
Query:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCR-RKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQM
        MGKP  GS+  + +++KFEKK+ FY +V DTV SL+ QK I KKK  R R++ LKA+DL+ LSEFLP     +K    A ELK+NCK R K +L E +++
Subjt:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCR-RKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQM

Query:  HTVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLK
        + VL+HP FQADP+G+I  HL S QP  E K KK  N NGSKKR +KK K
Subjt:  HTVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLK
AT2G01640.2 unknown protein5.5e-3353.33Show/hide
Query:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCR-RKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQM
        MGKP  GS+  + +++KFEKK+ FY +V DTV SL+ QK I KKK  R R++ LKA+DL+ LSEFLP     +K    A ELK+NCK R K +L E +++
Subjt:  MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCR-RKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQM

Query:  HTVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLK
        + VL+HP FQADP+G+I  HL S QP  E K KK  N NGSKKR +KK K
Subjt:  HTVLNHPVFQADPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAAACCAGTCTCTGGGTCGGATTCCAAATCTAATGCCGAACGAAAATTTGAAAAGAAGGTTCTCTTTTACAAGCGAGTTGGAGATACTGTTGCTAGCTTAAATGC
TCAAAAGACTATTACTAAGAAGAAAACATGTAGACGAAAAAGGGACTTGAAGGCTTTCGATCTTTCTACTCTTTCAGAGTTTCTTCCTGGATTGAAGGATCCTAAAAAGA
AAACTTCTGCAGCAGCCGAGTTAAAAGTAAATTGCAAATCTAGGCTAAAGTTTATTTTGAAGGAAACAAAACAGATGCATACTGTTCTTAATCACCCTGTATTCCAGGCG
GACCCTTTGGGGGCTATTCGTTTACATTTAGAGAGCACACAGCCCGTCGAGGAACCGAAGGAAAAGAAGACAAAGAATAGAAATGGTAGCAAGAAAAGGAAGGAGAAAAA
ATTGAAAGGCACTGCAAGACCTTCATCTATGGAGATGTGA
mRNA sequenceShow/hide mRNA sequence
TAAATCTTCCTTAAATCCGCAAAACAAACAGCCCCAAACCTTGTTCGTTAAAAGGTTTCCGCCTCCGTATTTCCTCCTCCAACGGCGGAAAATATCTCATCGTCTCGTCT
TCAGTCGATTTGTTTTTCTGAGATTGAGCTTTTGATTCGAAATCCAAATACATCATCAAGTTCTGCCGATTTTCACCCAATTTATTTCACCTACGACGGAGCTCCGGTCG
CCGATTTCCTCCGACACTGCATCTCGGAACCATTATTTTGGGAACTGAGTTAATCTCGAACTCTAGGTTTCGTTTCTTCATCTTCTTCTTTCAGCAATCCAAGCACGGAC
GTTTTCAAGCTGTAATTATGGGCAAACCAGTCTCTGGGTCGGATTCCAAATCTAATGCCGAACGAAAATTTGAAAAGAAGGTTCTCTTTTACAAGCGAGTTGGAGATACT
GTTGCTAGCTTAAATGCTCAAAAGACTATTACTAAGAAGAAAACATGTAGACGAAAAAGGGACTTGAAGGCTTTCGATCTTTCTACTCTTTCAGAGTTTCTTCCTGGATT
GAAGGATCCTAAAAAGAAAACTTCTGCAGCAGCCGAGTTAAAAGTAAATTGCAAATCTAGGCTAAAGTTTATTTTGAAGGAAACAAAACAGATGCATACTGTTCTTAATC
ACCCTGTATTCCAGGCGGACCCTTTGGGGGCTATTCGTTTACATTTAGAGAGCACACAGCCCGTCGAGGAACCGAAGGAAAAGAAGACAAAGAATAGAAATGGTAGCAAG
AAAAGGAAGGAGAAAAAATTGAAAGGCACTGCAAGACCTTCATCTATGGAGATGTGACCAATCTCTCTGGGTTTTCTTTTGCCATCTTAAGCCAATAGCTTCCTTTTTTT
GCGCTGGATTGAGGTCAGAAGTTGAATTGAGTTGTCATTGTTGCCAACTTCATGTTTATTTTGATTTGTCAAGTTATATGAATTCTCCTATCAACAACAATTTGGTTTTT
GTTATTGAATGAGAATTTGAACCAATAACCTTTTGAAGACTAGATTATATATTAGGCTTGTAACCGTGTTTGGAATATTTATAAGAAAAATAAGATGACATGAAGTGAAA
ATAGTTTTTAAACACTG
Protein sequenceShow/hide protein sequence
MGKPVSGSDSKSNAERKFEKKVLFYKRVGDTVASLNAQKTITKKKTCRRKRDLKAFDLSTLSEFLPGLKDPKKKTSAAAELKVNCKSRLKFILKETKQMHTVLNHPVFQA
DPLGAIRLHLESTQPVEEPKEKKTKNRNGSKKRKEKKLKGTARPSSMEM