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Sed0003005 (gene) of Chayote v1 genome

Gene IDSed0003005
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG11:6131816..6135684
RNA-Seq ExpressionSed0003005
SyntenySed0003005
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586037.1 putative defensin-like protein 180, partial [Cucurbita argyrosperma subsp. sororia]9.9e-0741.79Show/hide
Query:  SEKICSKELGICESDCNLECTQRHSPTEKPHGICEHNSRQMVCNCYYNCVKSVPEPLPGKVQHDGTG
        S+ +C++ LG C SDC+  C  RH P E P G C     + +C C Y+C  + P   PGKV  DG G
Subjt:  SEKICSKELGICESDCNLECTQRHSPTEKPHGICEHNSRQMVCNCYYNCVKSVPEPLPGKVQHDGTG

KAG7020813.1 Defensin-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]9.9e-0741.79Show/hide
Query:  SEKICSKELGICESDCNLECTQRHSPTEKPHGICEHNSRQMVCNCYYNCVKSVPEPLPGKVQHDGTG
        S+ +C++ LG C SDC+  C  RH P E P G C     + +C C Y+C  + P   PGKV  DG G
Subjt:  SEKICSKELGICESDCNLECTQRHSPTEKPHGICEHNSRQMVCNCYYNCVKSVPEPLPGKVQHDGTG

XP_021716657.1 uncharacterized protein LOC110684510 [Chenopodium quinoa]3.1e-0834.41Show/hide
Query:  MEEDSICKQCHKLAETTFHAIWACKHAQDSWRGSPFLHYVPN-HVTEVADLFCWFYGKLQSKQMEEFMIMCWRIWNCRNMEVNDVFKPSDATN
        M +D IC  C    ET  H+ + CK+A+D W  S F+  + +  VT  AD+  WF  K+   ++ EF  + W  W CRN+    +F+ +D  N
Subjt:  MEEDSICKQCHKLAETTFHAIWACKHAQDSWRGSPFLHYVPN-HVTEVADLFCWFYGKLQSKQMEEFMIMCWRIWNCRNMEVNDVFKPSDATN

XP_021722372.1 uncharacterized protein LOC110689847 [Chenopodium quinoa]9.9e-0740Show/hide
Query:  ETTFHAIWACKHAQDSWRGSPF---LHYVPNHVTEVADLFCWFYGKLQSKQMEEFMIMCWRIWNCRNMEV
        ET  H+I+ CK+A++ WR S F   LH      T +AD+ CWF  K+  +Q+  F  +CW  W+CRN  +
Subjt:  ETTFHAIWACKHAQDSWRGSPF---LHYVPNHVTEVADLFCWFYGKLQSKQMEEFMIMCWRIWNCRNMEV

XP_021845434.1 uncharacterized protein LOC110785307 [Spinacia oleracea]2.9e-0632.5Show/hide
Query:  DSICKQCHKLAETTFHAIWACKHAQDSWRGSPFLHYVPN-HVTEVADLFCWFYGKLQSKQMEEFMIMCWRIWNCRNMEVN
        D++C  C    ET  HA++ C+  +D WR S F   + +   T   + F WF GK+ + +++ F  + W  W CRN +V+
Subjt:  DSICKQCHKLAETTFHAIWACKHAQDSWRGSPFLHYVPN-HVTEVADLFCWFYGKLQSKQMEEFMIMCWRIWNCRNMEVN

TrEMBL top hitse value%identityAlignment
A0A2N9GKZ7 Uncharacterized protein4.0e-0632.56Show/hide
Query:  MEEDSICKQCHKLAETTFHAIWACKHAQDSW---RGSPFLHYVPNHVTEVADLFCWFYGKLQSKQMEEFMIMCWRIWNCRNMEVND
        +   S+C  C +  ETT+HAIW C  A+++W    G   L  + N   E + L  W +  L  +++E++ +  W IWN RN  V++
Subjt:  MEEDSICKQCHKLAETTFHAIWACKHAQDSW---RGSPFLHYVPNHVTEVADLFCWFYGKLQSKQMEEFMIMCWRIWNCRNMEVND

A0A2N9GPG8 Reverse transcriptase domain-containing protein4.0e-0633.72Show/hide
Query:  MEEDSICKQCHKLAETTFHAIWACKHAQDSW---RGSPFLHYVPNHVTEVADLFCWFYGKLQSKQMEEFMIMCWRIWNCRNMEVND
        +   S+C  C +  ETT+HAIW C  A+++W    G   L  + N   E + L  W +  L  +++E++ I  W IWN RN  V++
Subjt:  MEEDSICKQCHKLAETTFHAIWACKHAQDSW---RGSPFLHYVPNHVTEVADLFCWFYGKLQSKQMEEFMIMCWRIWNCRNMEVND

A0A2N9HLW2 Uncharacterized protein1.5e-0531.71Show/hide
Query:  SICKQCHKLAETTFHAIWACKHAQDSW---RGSPFLHYVPNHVTEVADLFCWFYGKLQSKQMEEFMIMCWRIWNCRNMEVND
        S+C  C +  ETT+HA+W C  A+++W    G   +  + N   E + L  W + +L  +++E++ +  W IWN RN  V++
Subjt:  SICKQCHKLAETTFHAIWACKHAQDSW---RGSPFLHYVPNHVTEVADLFCWFYGKLQSKQMEEFMIMCWRIWNCRNMEVND

A0A2N9IBV7 Reverse transcriptase domain-containing protein4.0e-0633.72Show/hide
Query:  MEEDSICKQCHKLAETTFHAIWACKHAQDSW---RGSPFLHYVPNHVTEVADLFCWFYGKLQSKQMEEFMIMCWRIWNCRNMEVND
        +   S+C  C +  ETT+HAIW C  A+++W    G   L  + N   E + L  W +  L  +++E++ I  W IWN RN  V++
Subjt:  MEEDSICKQCHKLAETTFHAIWACKHAQDSW---RGSPFLHYVPNHVTEVADLFCWFYGKLQSKQMEEFMIMCWRIWNCRNMEVND

A0A803L736 Uncharacterized protein5.3e-0630.49Show/hide
Query:  DSICKQCHKLAETTFHAIWACKHAQDSWRGSPF--LHYVPNHVTEVADLFCWFYGKLQSKQMEEFMIMCWRIWNCRNMEVND
        DS C  C    E+  HA++ C + Q +W+   F  L     H++  +D+F W  GK+   ++ + M + W IW CRN  +++
Subjt:  DSICKQCHKLAETTFHAIWACKHAQDSWRGSPF--LHYVPNHVTEVADLFCWFYGKLQSKQMEEFMIMCWRIWNCRNMEVND

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGGATTCGATTTGCAAACAATGCCACAAGCTTGCAGAGACAACTTTTCATGCTATTTGGGCGTGCAAACATGCACAAGACTCTTGGAGGGGTTCTCCGTTTCT
GCACTATGTTCCAAACCATGTTACAGAGGTGGCAGACTTATTTTGTTGGTTTTATGGAAAGCTTCAGTCAAAACAAATGGAAGAATTTATGATCATGTGTTGGAGGATTT
GGAACTGCAGAAACATGGAAGTCAATGACGTTTTTAAGCCCAGTGATGCTACTAATCAAAAGACCTTTTATTTGCCTGCTTATGATTGGGATTATTACACGAGTCTAGCG
ACAGTGAGTGAAAAGATATGTTCGAAAGAGCTAGGAATATGCGAAAGCGACTGCAACTTGGAATGCACACAAAGGCACAGCCCGACAGAGAAGCCTCACGGTATATGTGA
GCACAACAGTCGCCAAATGGTGTGTAATTGTTATTACAATTGCGTAAAATCGGTGCCGGAACCTCTGCCTGGGAAGGTGCAACACGATGGGACTGGAGTTCTGGAGCCCC
CTGTACAACAGCCATTGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAGGATTCGATTTGCAAACAATGCCACAAGCTTGCAGAGACAACTTTTCATGCTATTTGGGCGTGCAAACATGCACAAGACTCTTGGAGGGGTTCTCCGTTTCT
GCACTATGTTCCAAACCATGTTACAGAGGTGGCAGACTTATTTTGTTGGTTTTATGGAAAGCTTCAGTCAAAACAAATGGAAGAATTTATGATCATGTGTTGGAGGATTT
GGAACTGCAGAAACATGGAAGTCAATGACGTTTTTAAGCCCAGTGATGCTACTAATCAAAAGACCTTTTATTTGCCTGCTTATGATTGGGATTATTACACGAGTCTAGCG
ACAGTGAGTGAAAAGATATGTTCGAAAGAGCTAGGAATATGCGAAAGCGACTGCAACTTGGAATGCACACAAAGGCACAGCCCGACAGAGAAGCCTCACGGTATATGTGA
GCACAACAGTCGCCAAATGGTGTGTAATTGTTATTACAATTGCGTAAAATCGGTGCCGGAACCTCTGCCTGGGAAGGTGCAACACGATGGGACTGGAGTTCTGGAGCCCC
CTGTACAACAGCCATTGATGTGA
Protein sequenceShow/hide protein sequence
MEEDSICKQCHKLAETTFHAIWACKHAQDSWRGSPFLHYVPNHVTEVADLFCWFYGKLQSKQMEEFMIMCWRIWNCRNMEVNDVFKPSDATNQKTFYLPAYDWDYYTSLA
TVSEKICSKELGICESDCNLECTQRHSPTEKPHGICEHNSRQMVCNCYYNCVKSVPEPLPGKVQHDGTGVLEPPVQQPLM