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Sed0003029 (gene) of Chayote v1 genome

Gene IDSed0003029
OrganismSechium edule (Chayote v1)
DescriptionRNA-binding protein 2-like
Genome locationLG03:2818672..2821079
RNA-Seq ExpressionSed0003029
SyntenySed0003029
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602170.1 RNA-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia]1.6e-0835.61Show/hide
Query:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQSARYAHDHPSPLGKKHKQLESAVTELIAPPFSFVLAPIPSPSG
        +P  LCFV+F +++ AATAM ALQGY++DEQ+P S +L ++F+RHP     SG+     +     PSP             +L  PP     AP      
Subjt:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQSARYAHDHPSPLGKKHKQLESAVTELIAPPFSFVLAPIPSPSG

Query:  NPYEDTSPPPLDLRRRYPWAPDFVDQSPPPPF
              S PP   R+   W  ++  +SPPPPF
Subjt:  NPYEDTSPPPLDLRRRYPWAPDFVDQSPPPPF

XP_038884975.1 RNA-binding protein 2-like isoform X1 [Benincasa hispida]4.0e-0752.46Show/hide
Query:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQSARY
        +P  LCFV+F + + AATAM ALQGY++DEQ+P S +L ++F+RHP     SGS S   RY
Subjt:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQSARY

XP_038884976.1 RNA-binding protein 2-like isoform X2 [Benincasa hispida]4.0e-0752.46Show/hide
Query:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQSARY
        +P  LCFV+F + + AATAM ALQGY++DEQ+P S +L ++F+RHP     SGS S   RY
Subjt:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQSARY

XP_038884977.1 RNA-binding protein 2-like isoform X3 [Benincasa hispida]4.0e-0752.46Show/hide
Query:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQSARY
        +P  LCFV+F + + AATAM ALQGY++DEQ+P S +L ++F+RHP     SGS S   RY
Subjt:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQSARY

XP_038884978.1 RNA-binding protein 2-like isoform X4 [Benincasa hispida]4.0e-0752.46Show/hide
Query:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQSARY
        +P  LCFV+F + + AATAM ALQGY++DEQ+P S +L ++F+RHP     SGS S   RY
Subjt:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQSARY

TrEMBL top hitse value%identityAlignment
A0A0A0KCN5 RRM domain-containing protein2.1e-0928.51Show/hide
Query:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQ-------------------------------------------
        +P  LCFV+F + + AATAM ALQGY++DEQ+P S +L ++F+RHP     SGS  +                                           
Subjt:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQ-------------------------------------------

Query:  -------------------------------------------------------SARYAHDHPSPLGKKHKQLESA-----VTELIAPPFSFVLAPIPS
                                                               SA YAH +P PL KKHKQ E       V+E I P F FV  PIPS
Subjt:  -------------------------------------------------------SARYAHDHPSPLGKKHKQLESA-----VTELIAPPFSFVLAPIPS

Query:  PSGNPYEDTSPPPLDLRRRYPWAPDFVDQSPPPPF
        PS  PYE   PPPL    + P +P     +P  P+
Subjt:  PSGNPYEDTSPPPLDLRRRYPWAPDFVDQSPPPPF

A0A6J1CKA2 RNA-binding protein 2-like7.4e-0750.88Show/hide
Query:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQ
        +P  LCFV+F + + AATAM ALQGY++DEQ+P S +L ++F+RHP     SGS  +
Subjt:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQ

A0A6J1FKI7 RNA-binding protein 2-like isoform X17.4e-0750.88Show/hide
Query:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQ
        +P  LCFV+F + + AATAM ALQGY++DEQ+P S +L ++F+RHP     SGS  +
Subjt:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQ

A0A6J1JXN9 RNA-binding protein 2-like isoform X27.4e-0750.88Show/hide
Query:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQ
        +P  LCFV+F + + AATAM ALQGY++DEQ+P S +L ++F+RHP     SGS  +
Subjt:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQ

A0A6J1JZU6 RNA-binding protein 2-like isoform X17.4e-0750.88Show/hide
Query:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQ
        +P  LCFV+F + + AATAM ALQGY++DEQ+P S +L ++F+RHP     SGS  +
Subjt:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQ

SwissProt top hitse value%identityAlignment
A1A6K6 Nuclear speckle RNA-binding protein A2.7e-0652.17Show/hide
Query:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHP
        +P  LCFV+F + + AATA+ ALQGYR+DE    S FL ++F+R P
Subjt:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHP

F4HWF9 Nuclear speckle RNA-binding protein B3.2e-0754.35Show/hide
Query:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHP
        +PT LCFV+F++S+ AATA+ ALQ YR+DE  P S  L ++F R+P
Subjt:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHP

G7ID19 RNA-binding protein 21.4e-0752.08Show/hide
Query:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQ
        +P  LCFV+F + + AATA+ ALQGY+VDE NP S++L ++F+R P +
Subjt:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQ

Q8H0P8 RNA-binding protein 13.2e-0747.46Show/hide
Query:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQSA
        +P  LCFV+F + + AATA+ ALQGY+VDE NP S+ L ++F+R+P     SG   +S+
Subjt:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQSA

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding2.3e-0854.35Show/hide
Query:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHP
        +PT LCFV+F++S+ AATA+ ALQ YR+DE  P S  L ++F R+P
Subjt:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHP

AT1G21320.2 nucleotide binding;nucleic acid binding2.3e-0854.35Show/hide
Query:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHP
        +PT LCFV+F++S+ AATA+ ALQ YR+DE  P S  L ++F R+P
Subjt:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHP

AT1G76940.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.9e-0752.17Show/hide
Query:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHP
        +P  LCFV+F + + AATA+ ALQGYR+DE    S FL ++F+R P
Subjt:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHP

AT1G76940.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.9e-0752.17Show/hide
Query:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHP
        +P  LCFV+F + + AATA+ ALQGYR+DE    S FL ++F+R P
Subjt:  EPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCTACTGCATTATGTTTTGTGGAATTTGACAGCTCCTCCGATGCAGCAACTGCCATGATGGCATTGCAAGGTTATAGAGTGGATGAACAAAATCCCAGATCTAC
ATTCTTGGAAATAAAGTTTGCACGTCATCCAGCTCAGGTTTATGAATCTGGATCTGCCAGCCAAAGTGCAAGGTATGCTCATGATCATCCATCTCCTTTAGGAAAGAAGC
ATAAACAATTAGAGTCAGCAGTTACTGAGCTTATAGCTCCCCCTTTTTCTTTTGTATTGGCTCCAATACCATCCCCATCTGGCAATCCTTATGAAGATACATCACCGCCG
CCATTAGACTTGCGAAGACGTTACCCGTGGGCACCCGATTTCGTCGATCAATCGCCTCCACCTCCTTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCTACTGCATTATGTTTTGTGGAATTTGACAGCTCCTCCGATGCAGCAACTGCCATGATGGCATTGCAAGGTTATAGAGTGGATGAACAAAATCCCAGATCTAC
ATTCTTGGAAATAAAGTTTGCACGTCATCCAGCTCAGGTTTATGAATCTGGATCTGCCAGCCAAAGTGCAAGGTATGCTCATGATCATCCATCTCCTTTAGGAAAGAAGC
ATAAACAATTAGAGTCAGCAGTTACTGAGCTTATAGCTCCCCCTTTTTCTTTTGTATTGGCTCCAATACCATCCCCATCTGGCAATCCTTATGAAGATACATCACCGCCG
CCATTAGACTTGCGAAGACGTTACCCGTGGGCACCCGATTTCGTCGATCAATCGCCTCCACCTCCTTTCTAG
Protein sequenceShow/hide protein sequence
MEPTALCFVEFDSSSDAATAMMALQGYRVDEQNPRSTFLEIKFARHPAQVYESGSASQSARYAHDHPSPLGKKHKQLESAVTELIAPPFSFVLAPIPSPSGNPYEDTSPP
PLDLRRRYPWAPDFVDQSPPPPF