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Sed0003033 (gene) of Chayote v1 genome

Gene IDSed0003033
OrganismSechium edule (Chayote v1)
Descriptionprotein LOW PSII ACCUMULATION 2, chloroplastic
Genome locationLG07:8121738..8125031
RNA-Seq ExpressionSed0003033
SyntenySed0003033
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR038789 - Protein LOW PSII ACCUMULATION 2 like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600161.1 Protein LOW PSII ACCUMULATION 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.0e-7781.5Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ
        MALQIIHHSPSSFTRKPYHLP  PLHF S  KFI+KSQN SESEKPISK VDD APV TSS      AQGFGS S+QST +SKSSPK+  SKGKQKGK Q
Subjt:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ

Query:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK
        RASIIRRSPVEKPVF  EVD  A KEQG+ ESYFLLTWLGLG VILVEGI LAASGFLPE+WDKF VKYLYPSFTPTVSLFVAGTV YGVSKYLQNEK+K
Subjt:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK

XP_008439106.1 PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo]8.8e-7880.88Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ
        MALQI+HHSPSSFT+KPYHLPN  LHF S  KFI+KSQN SESEKPISKIVDD AP+ATSSK S+S  QGFGSSS QST TSKS+PKS     KQKGK Q
Subjt:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ

Query:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK
        RASIIRRSPVEKPVF  EVD   AKEQ R ESYFLLTWLGLGVVILVEGI LAASGFLPEEWD+  VKYLYPSFTPTVSLFVAGTV YGV KYLQNEKIK
Subjt:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK

Query:  GDKS
         +KS
Subjt:  GDKS

XP_022941727.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata]7.2e-8081.86Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ
        MALQIIHHSPSSFTRKPYHLP  PLHF S  KFI+KSQN SESEKPISK VDD APV TSS      AQGFGS S+QST +SKSSPK+  SKGKQKGK Q
Subjt:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ

Query:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK
        RASIIRRSPVEKPVF  EVD  A KEQG+ ESYFLLTWLGLG VILVEGI LAASGFLPE+WDKF VKYLYPSFTPTVSLFVAGTV YGVSKYLQNEK+K
Subjt:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK

Query:  GDKS
        GDKS
Subjt:  GDKS

XP_022973018.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima]2.3e-7880.88Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ
        MALQIIHHSPSSFTRKPYHLP TPL+F S  KFI+KSQ+ SESEKPISK VDD A V TSS      AQGFGS S+QST +SKSSPK+  SKGKQKGK Q
Subjt:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ

Query:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK
        RASIIRRSPVEKPVF  EVD  A KEQG+ ESYFLLTWLGLG VILVEGI LAASGFLPE WDKF VKYLYPSFTPTVSLFVAGTV YGVSKYLQNEK+K
Subjt:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK

Query:  GDKS
        GDKS
Subjt:  GDKS

XP_023554492.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo]1.4e-8082.35Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ
        MALQIIHHSPSSFTRKPYHLP TPLHF S  KFI+KSQN SESEKPISK VDD APV TSS      AQGFGS S+QST +SKSSPK+  SKGKQKGK Q
Subjt:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ

Query:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK
        RASIIRRSPVEKPVF  EVD  A KEQG+ ESYFLLTWLGLG VILVEGI LAASGFLPE+WDKF VKYLYPSFTPTVSLFVAGTV YGVSKYLQNEK+K
Subjt:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK

Query:  GDKS
        GDKS
Subjt:  GDKS

TrEMBL top hitse value%identityAlignment
A0A1S3AXX6 protein LOW PSII ACCUMULATION 2, chloroplastic4.3e-7880.88Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ
        MALQI+HHSPSSFT+KPYHLPN  LHF S  KFI+KSQN SESEKPISKIVDD AP+ATSSK S+S  QGFGSSS QST TSKS+PKS     KQKGK Q
Subjt:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ

Query:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK
        RASIIRRSPVEKPVF  EVD   AKEQ R ESYFLLTWLGLGVVILVEGI LAASGFLPEEWD+  VKYLYPSFTPTVSLFVAGTV YGV KYLQNEKIK
Subjt:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK

Query:  GDKS
         +KS
Subjt:  GDKS

A0A5A7VJY0 Protein LOW PSII ACCUMULATION 21.2e-7780.39Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ
        MALQI+HHSPSSFT+KPYHLPN  LHF S  KFI+KSQN SESEKPISKIVDD AP+ATSSK  +S +QGFGSSS QST TSKS+PKS     KQKGK Q
Subjt:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ

Query:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK
        RASIIRRSPVEKPVF  EVD   AKEQ R ESYFLLTWLGLGVVILVEGI LAASGFLPEEWD+  VKYLYPSFTPTVSLFVAGTV YGV KYLQNEKIK
Subjt:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK

Query:  GDKS
         +KS
Subjt:  GDKS

A0A6J1CH98 protein LOW PSII ACCUMULATION 2, chloroplastic2.3e-7681.55Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNS--SESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGK
        MALQII HSPSSFTRKPY LP  PL F S R F++KSQNS  SESEK ISK+VDD A VATSSKASSS AQGFGSS  QS  TSK SPK+  SKGKQKGK
Subjt:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNS--SESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGK

Query:  GQRASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEK
         QRASIIRRSPVEKPVF  +VD  AAKEQGR ESYFLLTWLGLG VILVEGI LAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTV YGV KYLQNEK
Subjt:  GQRASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEK

Query:  IKGDKS
         KG+KS
Subjt:  IKGDKS

A0A6J1FNA7 protein LOW PSII ACCUMULATION 2, chloroplastic3.5e-8081.86Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ
        MALQIIHHSPSSFTRKPYHLP  PLHF S  KFI+KSQN SESEKPISK VDD APV TSS      AQGFGS S+QST +SKSSPK+  SKGKQKGK Q
Subjt:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ

Query:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK
        RASIIRRSPVEKPVF  EVD  A KEQG+ ESYFLLTWLGLG VILVEGI LAASGFLPE+WDKF VKYLYPSFTPTVSLFVAGTV YGVSKYLQNEK+K
Subjt:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK

Query:  GDKS
        GDKS
Subjt:  GDKS

A0A6J1IBT8 protein LOW PSII ACCUMULATION 2, chloroplastic1.1e-7880.88Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ
        MALQIIHHSPSSFTRKPYHLP TPL+F S  KFI+KSQ+ SESEKPISK VDD A V TSS      AQGFGS S+QST +SKSSPK+  SKGKQKGK Q
Subjt:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ

Query:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK
        RASIIRRSPVEKPVF  EVD  A KEQG+ ESYFLLTWLGLG VILVEGI LAASGFLPE WDKF VKYLYPSFTPTVSLFVAGTV YGVSKYLQNEK+K
Subjt:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK

Query:  GDKS
        GDKS
Subjt:  GDKS

SwissProt top hitse value%identityAlignment
F4KDA6 Protein LPA24.7e-4253.69Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ
        MALQI  HSP SF+ +PYHL  T      N +F +K QN        S+I  D     + SK SSS   GFGS ++ S   S +   SA + G +KGKG+
Subjt:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ

Query:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK
        R  + RR+PVEKPVF  E     A+EQ + E+ FLLTWLGLG+VIL+EGI LAASGFLPEE DK  VKY+YP FTP+V LFVAGT  YGV KY+QNEK+K
Subjt:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK

Query:  GDK
        G +
Subjt:  GDK

Arabidopsis top hitse value%identityAlignment
AT5G51545.1 low psii accumulation23.4e-4353.69Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ
        MALQI  HSP SF+ +PYHL  T      N +F +K QN        S+I  D     + SK SSS   GFGS ++ S   S +   SA + G +KGKG+
Subjt:  MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQ

Query:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK
        R  + RR+PVEKPVF  E     A+EQ + E+ FLLTWLGLG+VIL+EGI LAASGFLPEE DK  VKY+YP FTP+V LFVAGT  YGV KY+QNEK+K
Subjt:  RASIIRRSPVEKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIK

Query:  GDK
        G +
Subjt:  GDK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTACAAATAATCCACCATTCTCCATCTTCGTTCACCAGAAAACCCTATCATCTTCCAAACACACCTCTCCATTTCCTCTCAAACCGCAAATTCATCGTCAAATC
GCAGAACTCATCGGAATCGGAGAAGCCGATTTCGAAAATCGTCGACGACGGCGCTCCAGTCGCGACCTCATCCAAGGCATCGAGTTCACCCGCTCAGGGTTTCGGCTCTT
CATCGGCTCAATCGACGATTACGAGCAAATCCAGTCCAAAATCTGCAGTATCTAAGGGGAAACAGAAGGGCAAGGGGCAGAGGGCTTCGATTATCCGGCGGTCACCGGTG
GAGAAACCAGTGTTTGCTAGAGAAGTAGATTTGGGAGCGGCGAAGGAGCAGGGCAGGTATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGCGTTGTGATTCTCGT
TGAGGGGATTGCGCTTGCGGCATCCGGTTTCTTGCCAGAAGAGTGGGACAAGTTCTTAGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCTCTGTTTGTTGCTG
GAACTGTTGTGTATGGAGTTTCGAAGTATCTTCAGAACGAGAAAATTAAAGGTGATAAATCATGA
mRNA sequenceShow/hide mRNA sequence
ACCAACCCTTAACAAAAAAAAAAAAAAAAAACAAAAAAAATGGCGCTACAAATAATCCACCATTCTCCATCTTCGTTCACCAGAAAACCCTATCATCTTCCAAACACACC
TCTCCATTTCCTCTCAAACCGCAAATTCATCGTCAAATCGCAGAACTCATCGGAATCGGAGAAGCCGATTTCGAAAATCGTCGACGACGGCGCTCCAGTCGCGACCTCAT
CCAAGGCATCGAGTTCACCCGCTCAGGGTTTCGGCTCTTCATCGGCTCAATCGACGATTACGAGCAAATCCAGTCCAAAATCTGCAGTATCTAAGGGGAAACAGAAGGGC
AAGGGGCAGAGGGCTTCGATTATCCGGCGGTCACCGGTGGAGAAACCAGTGTTTGCTAGAGAAGTAGATTTGGGAGCGGCGAAGGAGCAGGGCAGGTATGAGAGCTATTT
TCTTCTTACTTGGTTGGGTCTTGGCGTTGTGATTCTCGTTGAGGGGATTGCGCTTGCGGCATCCGGTTTCTTGCCAGAAGAGTGGGACAAGTTCTTAGTCAAATATTTGT
ATCCATCCTTTACCCCAACCGTCTCTCTGTTTGTTGCTGGAACTGTTGTGTATGGAGTTTCGAAGTATCTTCAGAACGAGAAAATTAAAGGTGATAAATCATGATTTAAT
CTTTTGATTGATATTCTGCATTTGTTGTGAAGACCTGAAAAATCTCAACTGCTTGTAGATTGTGTGTATACTATGTATGTTATTAGACTGAAAAACCGAGGATGAGAAAT
TTTTTTAGCTTATAAGCAAATGAGATTCTGTTATTGGATCCCAGTAAACAACTAATTATGTTAGGCAATTTATTAGTTTCTTTTAACTTTACGCTTAATTATGTTTGATA
TTCAATGAAAATAATCTTCTGAAAGATCCTTCTGCTATTACATGAGGAATGAGAACCTATTGTATAGATCCTTTAAGAAGTTCAAGGTGCTAACATTGCCTCAGAAGTGG
ATAGGTGTTCCTTTCTTTTCCTCTTTCTTTCATTTTATGGCATTCCCTTCTATTCTGCTTTTCATCTCCTTTCACCTTCCAATCAAAC
Protein sequenceShow/hide protein sequence
MALQIIHHSPSSFTRKPYHLPNTPLHFLSNRKFIVKSQNSSESEKPISKIVDDGAPVATSSKASSSPAQGFGSSSAQSTITSKSSPKSAVSKGKQKGKGQRASIIRRSPV
EKPVFAREVDLGAAKEQGRYESYFLLTWLGLGVVILVEGIALAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVVYGVSKYLQNEKIKGDKS