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Sed0003046 (gene) of Chayote v1 genome

Gene IDSed0003046
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG07:17909765..17910729
RNA-Seq ExpressionSed0003046
SyntenySed0003046
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEV76294.1 hypothetical protein [Tanacetum cinerariifolium]5.0e-0942.15Show/hide
Query:  MRHHDNGSEEHLHLTQAEWKAREKKEND-DGSNQ------TGGRSQQSGNGNSRGRGSNMSQSNMKHLLPRDKSKIKYYNCSKFEHYASECCSKKHEEEV
        ++ + +  E  L LT AEW ++  + ++ D SN       T GR    G G  RGR SN S+++ KH  PRDKSK+K + C KF HYASEC  KK  EE 
Subjt:  MRHHDNGSEEHLHLTQAEWKAREKKEND-DGSNQ------TGGRSQQSGNGNSRGRGSNMSQSNMKHLLPRDKSKIKYYNCSKFEHYASECCSKKHEEEV

Query:  NHIHVDNNEETTLFMVVHKEK
        N +    +EE TL M + +EK
Subjt:  NHIHVDNNEETTLFMVVHKEK

GEV85562.1 hypothetical protein [Tanacetum cinerariifolium]8.5e-0941.94Show/hide
Query:  MRHHDNGSEEHLHLTQAEWKAREKKEND-DGSNQTGGRSQQSGNGNSRGRG----------SNMSQSNMKHLLPRDKSKIKYYNCSKFEHYASECCSKKH
        +R + +  E  L LT AEW ++ K+ ++ D SN + GR   SG G  RGRG          SN  +++ KH  PRDKSK+K + C KF HYASEC  KK 
Subjt:  MRHHDNGSEEHLHLTQAEWKAREKKEND-DGSNQTGGRSQQSGNGNSRGRG----------SNMSQSNMKHLLPRDKSKIKYYNCSKFEHYASECCSKKH

Query:  EEEVNHIHVDNNEETTLFMVVHKE
         EE N +    +EE TL M + +E
Subjt:  EEEVNHIHVDNNEETTLFMVVHKE

GEW14493.1 ribonuclease H-like domain, reverse transcriptase, RNA-dependent DNA polymerase [Tanacetum cinerariifolium]5.0e-0942.15Show/hide
Query:  MRHHDNGSEEHLHLTQAEWKAREKKEND-DGSNQ------TGGRSQQSGNGNSRGRGSNMSQSNMKHLLPRDKSKIKYYNCSKFEHYASECCSKKHEEEV
        ++ + +  E  L LT AEW ++  + ++ D SN       T GR    G G  RGR SN S+++ KH  PRDKSK+K + C KF HYASEC  KK  EE 
Subjt:  MRHHDNGSEEHLHLTQAEWKAREKKEND-DGSNQ------TGGRSQQSGNGNSRGRGSNMSQSNMKHLLPRDKSKIKYYNCSKFEHYASECCSKKHEEEV

Query:  NHIHVDNNEETTLFMVVHKEK
        N +    +EE TL M + +EK
Subjt:  NHIHVDNNEETTLFMVVHKEK

XP_039119179.1 uncharacterized protein LOC120255419 [Dioscorea cayenensis subsp. rotundata]1.9e-0840.35Show/hide
Query:  MRHHDNGSEEHLHLTQAEWKAREKKENDDGSNQTGGRSQQSGNGNSRGRGSNMSQSNMKHLLPR-DKSKIKYYNCSKFEHYASECCSKKHEEEVNHIHV-
        +R +++  EEH+ LT+ EWK RE+ E    S +  G +   G G  RG   + S +   H   + DK+K+KYYNC  F HYA EC SKK +EE   +   
Subjt:  MRHHDNGSEEHLHLTQAEWKAREKKENDDGSNQTGGRSQQSGNGNSRGRGSNMSQSNMKHLLPR-DKSKIKYYNCSKFEHYASECCSKKHEEEVNHIHV-

Query:  -DNNEETTLFMVVH
         DN++E TL M  H
Subjt:  -DNNEETTLFMVVH

XP_039141989.1 uncharacterized protein LOC120279192 [Dioscorea cayenensis subsp. rotundata]3.2e-0843.1Show/hide
Query:  MRHHDNGSEEHLHLTQAEWKAREKKENDDGSNQTGGRSQQSGNGNSRGRGSNMSQSNMK--HLLPR-DKSKIKYYNCSKFEHYASECCSKKHEEEVNHIH
        +R +++  EEH+ LT+AEWKARE  E +  SN   GR   +  G  RG G +  +S  +  H   + DK+K+KYYNC  F HYA EC SKK +EE   + 
Subjt:  MRHHDNGSEEHLHLTQAEWKAREKKENDDGSNQTGGRSQQSGNGNSRGRGSNMSQSNMK--HLLPR-DKSKIKYYNCSKFEHYASECCSKKHEEEVNHIH

Query:  V--DNNEETTLFMVVH
           DN++E TL M  H
Subjt:  V--DNNEETTLFMVVH

TrEMBL top hitse value%identityAlignment
A0A6A6LT07 CCHC-type domain-containing protein1.7e-0743.52Show/hide
Query:  SEEHLHLTQAEWKAREK-KENDDGSNQTGGRSQQSGNGNSRGRGSNMSQSNMKHLLPR------DKSKIKYYNCSKFEHYASECCSKKHEEEVNHIHVDN
        S+E + LT+AEWKARE+ K+N   S +T   S + G G  RGRG N      K   P+      DKSKIK Y C K  H+ASEC SK+ EE+ N    D+
Subjt:  SEEHLHLTQAEWKAREK-KENDDGSNQTGGRSQQSGNGNSRGRGSNMSQSNMKHLLPR------DKSKIKYYNCSKFEHYASECCSKKHEEEVNHIHVDN

Query:  NEETTLFM
         E++ L +
Subjt:  NEETTLFM

A0A6A6M6K4 CCHC-type domain-containing protein1.7e-0743.52Show/hide
Query:  SEEHLHLTQAEWKAREK-KENDDGSNQTGGRSQQSGNGNSRGRGSNMSQSNMKHLLPR------DKSKIKYYNCSKFEHYASECCSKKHEEEVNHIHVDN
        S+E + LT+AEWKARE+ K+N   S +T   S + G G  RGRG N      K   P+      DKSKIK Y C K  H+ASEC SK+ EE+ N    D+
Subjt:  SEEHLHLTQAEWKAREK-KENDDGSNQTGGRSQQSGNGNSRGRGSNMSQSNMKHLLPR------DKSKIKYYNCSKFEHYASECCSKKHEEEVNHIHVDN

Query:  NEETTLFM
         E++ L +
Subjt:  NEETTLFM

A0A6A6MZF7 CCHC-type domain-containing protein1.7e-0743.52Show/hide
Query:  SEEHLHLTQAEWKAREK-KENDDGSNQTGGRSQQSGNGNSRGRGSNMSQSNMKHLLPR------DKSKIKYYNCSKFEHYASECCSKKHEEEVNHIHVDN
        S+E + LT+AEWKARE+ K+N   S +T   S + G G  RGRG N      K   P+      DKSKIK Y C K  H+ASEC SK+ EE+ N    D+
Subjt:  SEEHLHLTQAEWKAREK-KENDDGSNQTGGRSQQSGNGNSRGRGSNMSQSNMKHLLPR------DKSKIKYYNCSKFEHYASECCSKKHEEEVNHIHVDN

Query:  NEETTLFM
         E++ L +
Subjt:  NEETTLFM

A0A6A6N9H9 Uncharacterized protein1.7e-0743.52Show/hide
Query:  SEEHLHLTQAEWKAREK-KENDDGSNQTGGRSQQSGNGNSRGRGSNMSQSNMKHLLPR------DKSKIKYYNCSKFEHYASECCSKKHEEEVNHIHVDN
        S+E + LT+AEWKARE+ K+N   S +T   S + G G  RGRG N      K   P+      DKSKIK Y C K  H+ASEC SK+ EE+ N    D+
Subjt:  SEEHLHLTQAEWKAREK-KENDDGSNQTGGRSQQSGNGNSRGRGSNMSQSNMKHLLPR------DKSKIKYYNCSKFEHYASECCSKKHEEEVNHIHVDN

Query:  NEETTLFM
         E++ L +
Subjt:  NEETTLFM

A0A6A6NFA1 CCHC-type domain-containing protein1.7e-0743.52Show/hide
Query:  SEEHLHLTQAEWKAREK-KENDDGSNQTGGRSQQSGNGNSRGRGSNMSQSNMKHLLPR------DKSKIKYYNCSKFEHYASECCSKKHEEEVNHIHVDN
        S+E + LT+AEWKARE+ K+N   S +T   S + G G  RGRG N      K   P+      DKSKIK Y C K  H+ASEC SK+ EE+ N    D+
Subjt:  SEEHLHLTQAEWKAREK-KENDDGSNQTGGRSQQSGNGNSRGRGSNMSQSNMKHLLPR------DKSKIKYYNCSKFEHYASECCSKKHEEEVNHIHVDN

Query:  NEETTLFM
         E++ L +
Subjt:  NEETTLFM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGAAACATATGCCATCTCCAAGTAAATTCATAGTTGAAGATATCGTCGAGACGAAGTCGTCGACCAGGGTGGGCACCATGTCTTTTCAATATCCGTGCTCAGGAGG
AGCAATTATGCGCCACCACGACAATGGAAGTGAAGAGCATCTTCACTTGACTCAAGCCGAGTGGAAGGCACGAGAAAAGAAGGAAAATGATGATGGCTCAAATCAAACTG
GAGGTAGAAGCCAACAAAGTGGAAATGGAAATTCTCGTGGACGTGGCAGCAACATGAGCCAAAGTAATATGAAACACTTATTGCCACGAGACAAGTCAAAGATTAAGTAC
TACAATTGTAGCAAATTCGAGCATTATGCATCTGAATGTTGTAGCAAGAAACATGAGGAAGAGGTGAACCACATACATGTGGACAACAACGAAGAAACAACACTTTTCAT
GGTTGTGCACAAAGAGAAGTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCGAAACATATGCCATCTCCAAGTAAATTCATAGTTGAAGATATCGTCGAGACGAAGTCGTCGACCAGGGTGGGCACCATGTCTTTTCAATATCCGTGCTCAGGAGG
AGCAATTATGCGCCACCACGACAATGGAAGTGAAGAGCATCTTCACTTGACTCAAGCCGAGTGGAAGGCACGAGAAAAGAAGGAAAATGATGATGGCTCAAATCAAACTG
GAGGTAGAAGCCAACAAAGTGGAAATGGAAATTCTCGTGGACGTGGCAGCAACATGAGCCAAAGTAATATGAAACACTTATTGCCACGAGACAAGTCAAAGATTAAGTAC
TACAATTGTAGCAAATTCGAGCATTATGCATCTGAATGTTGTAGCAAGAAACATGAGGAAGAGGTGAACCACATACATGTGGACAACAACGAAGAAACAACACTTTTCAT
GGTTGTGCACAAAGAGAAGTACTAG
Protein sequenceShow/hide protein sequence
MPKHMPSPSKFIVEDIVETKSSTRVGTMSFQYPCSGGAIMRHHDNGSEEHLHLTQAEWKAREKKENDDGSNQTGGRSQQSGNGNSRGRGSNMSQSNMKHLLPRDKSKIKY
YNCSKFEHYASECCSKKHEEEVNHIHVDNNEETTLFMVVHKEKY