CuGenDBv2

Gene ID	Sed0003061
Organism	Sechium edule (Chayote v1)
Description	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase
Genome location	LG01:888695..891887
RNA-Seq Expression	Sed0003061
Synteny	Sed0003061
Gene Ontology terms	GO:0016874 - ligase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6605258.1 hypothetical protein SDJN03_02575, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-72

86.52

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Query:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFS
        MSD  DTDSDAPEEFTA+QGIQQD+EIRKVQKES ARVVREGKERRR WAEKKTPR+SKKGE VED  ETP HNDQVSKLGMLPSNLVQLLA+REKQVFS
Subjt:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK
        SDPGDEKPA K KTKRKK+KSSGI+TVLLNE+ PS CLQNSLEFLKKRKMN+ RS+SVLDN NQALRLLSSSGLL+KK
Subjt:  SDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK

KAG7035221.1 hypothetical protein SDJN02_02016, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.3e-73

87.08

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Query:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFS
        MSD  DTDSDAPEEFTA+QGIQQD+EIRKVQKES ARVVREGKERRR WAEKKTPR+SKKGE VED  ETP HNDQVSKLGMLPSNLVQLLA+REKQVFS
Subjt:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK
        SDPGDEKPA K KTKRKK+KSSGIETVLLNE+ PS CLQNSLEFLKKRKMN+ RS+SVLDN NQALRLLSSSGLL+KK
Subjt:  SDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK

XP_004148046.1 uncharacterized protein LOC101208336 [Cucumis sativus]

6.3e-72

84.27

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Query:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFS
        MSDRE+TDSDAPEEFTA+QG+QQD+EIRKVQKESKARV+REGKERRRLWAEKKTPR SKKGEIVED  E P ++D++SKLG LPSN+VQLL DREKQVFS
Subjt:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK
        SD GDEKPA+KPK KRKKTKSSGIETVLLNE+ PS CLQNSLEFLKKRKMNVARS++VL NPNQA RLLSSSGLL+KK
Subjt:  SDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK

XP_022947715.1 uncharacterized protein LOC111451498 [Cucurbita moschata]

2.8e-72

86.52

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Query:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFS
        MSD  DTDSDAPEEFTA+QGIQQD+EIRKVQKES ARVVREGKERRR WAEKKTPR+SKK E VED  ETP HNDQVSKLGMLPSNLVQLLA+REKQVFS
Subjt:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK
        SDPGDEKPA K KTKRKK+KSSGIETVLLNE+ PS CLQNSLEFLKKRKMN+ RS+SVLDN NQALRLLSSSGLL+KK
Subjt:  SDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK

XP_038901892.1 uncharacterized protein LOC120088571 [Benincasa hispida]

3.7e-72

84.92

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Query:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETP-THNDQVSKLGMLPSNLVQLLADREKQVF
        MSDREDTDSDAPEEFTA+QG+QQD+EIRKVQKESKARVVREGKERRRLWAEKKTPR SKKGE VED  E P  H+DQ+SKLGMLPSN+VQLL DREKQVF
Subjt:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETP-THNDQVSKLGMLPSNLVQLLADREKQVF

Query:  SSDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK
        SSDP DEKPA+KPK+KRKKTKSSGIETVLL+E+ PS CL NSLEFLKKRKMN+ RS+SVLDNPNQALRLLS+SGLL KK
Subjt:  SSDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LM07 Uncharacterized protein

3.0e-72

84.27

Show/hide

Query:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFS
        MSDRE+TDSDAPEEFTA+QG+QQD+EIRKVQKESKARV+REGKERRRLWAEKKTPR SKKGEIVED  E P ++D++SKLG LPSN+VQLL DREKQVFS
Subjt:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK
        SD GDEKPA+KPK KRKKTKSSGIETVLLNE+ PS CLQNSLEFLKKRKMNVARS++VL NPNQA RLLSSSGLL+KK
Subjt:  SDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK

A0A5A7TWK6 Uncharacterized protein

1.4e-69

83.24

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Query:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFS
        MSDRE+TDSDAPEEFTA+QG+QQD+EIRKVQ ESKARV+REGKERRRLWAEKKTPR SKKGEIVED  E P ++D+VSKLG LPSN+VQLL DREKQVFS
Subjt:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAVKPKTKRKKTK-SSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK
        SD GDEKPA+KPK KRKKTK SSGIETVLL+E+ PS CLQNSLEFLKKRKMNVARS++VL+NPNQA RLLSSSGLL+KK
Subjt:  SDPGDEKPAVKPKTKRKKTK-SSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK

A0A6J1DXW1 uncharacterized protein LOC111025162

6.8e-72

85.88

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Query:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFS
        MSD EDTDSDAPEEFTA+QGIQQDQEI KVQ ESKARVVREGKERRRLWAEKKTPR SKKGE VED  E P+H DQ SKLGMLPSNLVQLLADREKQVFS
Subjt:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSK
        SDPGDEKPA KPKTKRKKTKSSGIETV+LN++ P+ CLQNS+EFLKKRKMN+ RS+SVLDNPNQALR LSSSGLL+K
Subjt:  SDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSK

A0A6J1G7P4 uncharacterized protein LOC111451498

1.4e-72

86.52

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Query:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFS
        MSD  DTDSDAPEEFTA+QGIQQD+EIRKVQKES ARVVREGKERRR WAEKKTPR+SKK E VED  ETP HNDQVSKLGMLPSNLVQLLA+REKQVFS
Subjt:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK
        SDPGDEKPA K KTKRKK+KSSGIETVLLNE+ PS CLQNSLEFLKKRKMN+ RS+SVLDN NQALRLLSSSGLL+KK
Subjt:  SDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK

A0A6J1KZ49 uncharacterized protein LOC111499570

1.3e-70

84.27

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Query:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFS
        MSD  DTDSDAPEEFTA+QGIQQD+EIRK+QKES ARVVREGKERRR WAEKKTPR SKKGE VED  ETP HNDQVSKLGMLPSNLVQLLA+REKQVFS
Subjt:  MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFS

Query:  SDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK
        SDPGDEKPA K KT+R+K+KSSGIETVLLN + PS C QNSLEFLKKRKMN+ RS+SVLDN NQALRLLSSSGLL+KK
Subjt:  SDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G37090.1 unknown protein

4.9e-30

45.9

Show/hide

Query:  MSDRE--DTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVED--REETPTHNDQ-VSKLGMLPSNLVQLLADRE
        MSD +  D+DSDAPEE T +Q   +++ + K+Q+E+K RV RE KERR+L AE+ T R S+K EI+ED   EE P  N + ++  G L  +++  LA+RE
Subjt:  MSDRE--DTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVED--REETPTHNDQ-VSKLGMLPSNLVQLLADRE

Query:  KQVFSSDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK
        KQ   SD  +E+  +    ++KK KSSGIETV+  E PP  CL+  L+FLK R+  V RS+SV+ N  QALRL + + L  K+
Subjt:  KQVFSSDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK

AT4G37090.2 unknown protein

9.2e-29

45.9

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Query:  MSDRE--DTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVED--REETPTHNDQ-VSKLGMLPSNLVQLLADRE
        MSD +  D+DSDAPEE T +Q   +++ + K+Q+E+K RV RE KERR+L AE+ T R S+K EI+ED   EE P  N + ++  G L  +++  LA+RE
Subjt:  MSDRE--DTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVED--REETPTHNDQ-VSKLGMLPSNLVQLLADRE

Query:  KQVFSSDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK
        KQ   SD  +E+  +    ++KK KSSGIETV+  E PP  CL+  L+FLK R+  V RS+SV+ N  QALRL + + L  K+
Subjt:  KQVFSSDPGDEKPAVKPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCGGACAGAGAAGATACCGATTCCGACGCCCCGGAGGAGTTCACCGCCGATCAGGGAATACAGCAAGATCAGGAGATTAGAAAAGTTCAAAAAGAAAGTAAGGCCAG
GGTTGTTCGTGAAGGAAAAGAGCGTCGTAGACTGTGGGCTGAAAAGAAAACACCTCGCTCATCTAAAAAGGGCGAAATTGTCGAAGACAGAGAAGAAACCCCTACGCACA
ATGATCAAGTCAGCAAGTTGGGAATGCTTCCCAGTAATCTTGTCCAACTGCTTGCAGACCGTGAGAAACAAGTTTTCTCATCAGACCCTGGTGATGAAAAGCCTGCAGTA
AAGCCAAAAACCAAGAGGAAGAAAACCAAAAGCTCCGGGATTGAAACGGTTCTTTTAAACGAAAAGCCTCCATCTCCATGCTTACAAAACTCCTTGGAATTTTTGAAGAA
AAGGAAGATGAACGTAGCGAGGTCGACATCAGTTCTCGACAATCCTAACCAAGCATTACGCCTACTTTCTTCATCTGGCTTGTTAAGTAAGAAATAG

mRNA sequence

Show/hide mRNA sequence

CTGCTCGTCATCAGTAAGCGCAATTCTACAAATCCCTAAAACCCTCACAGAAACCCTAAAAAGATCGTTGCTATTCGGATGTCGGACAGAGAAGATACCGATTCCGACGC
CCCGGAGGAGTTCACCGCCGATCAGGGAATACAGCAAGATCAGGAGATTAGAAAAGTTCAAAAAGAAAGTAAGGCCAGGGTTGTTCGTGAAGGAAAAGAGCGTCGTAGAC
TGTGGGCTGAAAAGAAAACACCTCGCTCATCTAAAAAGGGCGAAATTGTCGAAGACAGAGAAGAAACCCCTACGCACAATGATCAAGTCAGCAAGTTGGGAATGCTTCCC
AGTAATCTTGTCCAACTGCTTGCAGACCGTGAGAAACAAGTTTTCTCATCAGACCCTGGTGATGAAAAGCCTGCAGTAAAGCCAAAAACCAAGAGGAAGAAAACCAAAAG
CTCCGGGATTGAAACGGTTCTTTTAAACGAAAAGCCTCCATCTCCATGCTTACAAAACTCCTTGGAATTTTTGAAGAAAAGGAAGATGAACGTAGCGAGGTCGACATCAG
TTCTCGACAATCCTAACCAAGCATTACGCCTACTTTCTTCATCTGGCTTGTTAAGTAAGAAATAGCATATTTGTTTGCAAGTCTATTTATTACATCTCTGTTAGCTTCGA
CAGGATAATGTATAATGTATTTGAGAACTGGTTGAGTTCAAGACTGATTCAACATGGAGAGTGAAAAAGTTCGTTGTCCTTTTATAATGAAGACGAC

Protein sequence

Show/hide protein sequence

MSDREDTDSDAPEEFTADQGIQQDQEIRKVQKESKARVVREGKERRRLWAEKKTPRSSKKGEIVEDREETPTHNDQVSKLGMLPSNLVQLLADREKQVFSSDPGDEKPAV
KPKTKRKKTKSSGIETVLLNEKPPSPCLQNSLEFLKKRKMNVARSTSVLDNPNQALRLLSSSGLLSKK

Sed0003061 (gene) of Chayote v1 genome