; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0003066 (gene) of Chayote v1 genome

Gene IDSed0003066
OrganismSechium edule (Chayote v1)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1-like
Genome locationLG01:60588573..60591909
RNA-Seq ExpressionSed0003066
SyntenySed0003066
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006510 - Zinc finger, lateral root primordium type 1
IPR006511 - SHORT INTERNODES, C-terminal
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605936.1 Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia]6.8e-9761.74Show/hide
Query:  MLGLRDVLLVAP-------------NLISDH----------------------------DDHNLLSHRTNRGGAGIHLWQNNQ--RTPPSS--------S
        M+GLRDV +VAP             NL+SD                             ++ NLLS+R++  G GI LWQ N   +  PSS        S
Subjt:  MLGLRDVLLVAP-------------NLISDH----------------------------DDHNLLSHRTNRGGAGIHLWQNNQ--RTPPSS--------S

Query:  LPNAAVTDGGIG--------GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAV---AAVGSAGSSSGVKKPRLVASQ
          N  + D GIG         +AT TCQDCGNQAKKDCSHRRCRTCCRSRGFDC+THVKSTWVPA+RRRERQLM V   AA GS+ S+SG KKPRL+ASQ
Subjt:  LPNAAVTDGGIG--------GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAV---AAVGSAGSSSGVKKPRLVASQ

Query:  TTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGG
        TTS TSTSNTTPPRSLDTSSS QDA F + LPGQ+RAPAVFKCVRVTAVDDG DE+AYQAVVKIGGH+FKG L+DQG+E  D+FPNVSELHLGDG  GG 
Subjt:  TTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGG

Query:  GRTIRNGGSTSSPLVDPSDVYDVAAS-GVGLPGFLGGSNYGNQIS
         R  RNG S+SSPLVDPSDVY+ AA+ G G P FLGGSNYGNQIS
Subjt:  GRTIRNGGSTSSPLVDPSDVYDVAAS-GVGLPGFLGGSNYGNQIS

KAG7035882.1 Protein LATERAL ROOT PRIMORDIUM 1 [Cucurbita argyrosperma subsp. argyrosperma]6.8e-9761.74Show/hide
Query:  MLGLRDVLLVAP-------------NLISDH----------------------------DDHNLLSHRTNRGGAGIHLWQNNQ--RTPPSS--------S
        M+GLRDV +VAP             NL+SD                             ++ NLLS+R++  G GI LWQ N   +  PSS        S
Subjt:  MLGLRDVLLVAP-------------NLISDH----------------------------DDHNLLSHRTNRGGAGIHLWQNNQ--RTPPSS--------S

Query:  LPNAAVTDGGIG--------GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAV---AAVGSAGSSSGVKKPRLVASQ
          N  + D GIG         +AT TCQDCGNQAKKDCSHRRCRTCCRSRGFDC+THVKSTWVPA+RRRERQLM V   AA GS+ S+SG KKPRL+ASQ
Subjt:  LPNAAVTDGGIG--------GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAV---AAVGSAGSSSGVKKPRLVASQ

Query:  TTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGG
        TTS TSTSNTTPPRSLDTSSS QDA F + LPGQ+RAPAVFKCVRVTAVDDG DE+AYQAVVKIGGH+FKG L+DQG+E  D+FPNVSELHLGDG  GG 
Subjt:  TTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGG

Query:  GRTIRNGGSTSSPLVDPSDVYDVAAS-GVGLPGFLGGSNYGNQIS
         R  RNG S+SSPLVDPSDVY+ AA+ G G P FLGGSNYGNQIS
Subjt:  GRTIRNGGSTSSPLVDPSDVYDVAAS-GVGLPGFLGGSNYGNQIS

XP_022995105.1 protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita maxima]5.6e-9962.21Show/hide
Query:  MLGLRDVLLVAP-------------NLISDH----------------------------DDHNLLSHRTNRGGAGIHLWQNNQ--RTPPSS--------S
        M+GLRDV +VAP             NL+SD                             ++ NLLS+R++  G GI LWQ N   +  PSS        S
Subjt:  MLGLRDVLLVAP-------------NLISDH----------------------------DDHNLLSHRTNRGGAGIHLWQNNQ--RTPPSS--------S

Query:  LPNAAVTDGGIG--------GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAV---AAVGSAGSSSGVKKPRLVASQ
          N  + D GIG         +AT TCQDCGNQAKKDCSHRRCRTCCRSRGFDC+THVKSTWVPA+RRRERQLM V   AA GS+GS+SG KKPRL+ASQ
Subjt:  LPNAAVTDGGIG--------GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAV---AAVGSAGSSSGVKKPRLVASQ

Query:  TTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGG
        TTS TSTSNTTPPRSLDTSSS QDA F + LPGQ+RAPAVFKCVRVTAVDDG DE+AYQAVVKIGGH+FKG L+DQG+E  D+FPNVSELHLGDG  GG 
Subjt:  TTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGG

Query:  GRTIRNGGSTSSPLVDPSDVYDVAASGVGLPGFLGGSNYGNQIS
         R  RNG S+SSPLVDPSDVY+ AA+G G P FLGGSNYGNQIS
Subjt:  GRTIRNGGSTSSPLVDPSDVYDVAASGVGLPGFLGGSNYGNQIS

XP_023532652.1 protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita pepo subsp. pepo]1.5e-9661.92Show/hide
Query:  MLGLRDVLLVAP-------------NLISDH----------------------------DDHNLLSHRTNRGGAGIHLWQNNQ--RTPPSS--------S
        M+GLRDV +VAP             NL+SD                             ++ NLLS+R++  G GI LWQ N   +  PSS        S
Subjt:  MLGLRDVLLVAP-------------NLISDH----------------------------DDHNLLSHRTNRGGAGIHLWQNNQ--RTPPSS--------S

Query:  LPNAAVTDGGIG--------GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAV---AAVGSAGSSSGVKKPRLVASQ
          N  + D GIG         +AT TCQDCGNQAKKDCSHRRCRTCCRSRGFDC+THVKSTWVPA+RRRERQLM V   AA GS+ S+SG KKPRL+ASQ
Subjt:  LPNAAVTDGGIG--------GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAV---AAVGSAGSSSGVKKPRLVASQ

Query:  TTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGG
        TTS TSTSNTTPPRSLDTSSS QDA F + LPGQ+RAPAVFKCVRVTAVDDG DE+AYQAVVKIGGH+FKG L+DQG+E  D+FPNVSELHLGDG  GG 
Subjt:  TTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGG

Query:  GRTIRNGGSTSSPLVDPSDVYDVAASGVGLPGFLGGSNYGNQIS
         R  RNG S SSPLVDPSDVY+ AA+G G P FLGGSNYGNQIS
Subjt:  GRTIRNGGSTSSPLVDPSDVYDVAASGVGLPGFLGGSNYGNQIS

XP_038902210.1 protein LATERAL ROOT PRIMORDIUM 1-like [Benincasa hispida]1.0e-10070.89Show/hide
Query:  DDHNLLSHRTNRGGAGIHLWQNNQRT-------PPSSSL---------PNAAVTDGGIG--------GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFD
        ++ NLLS+R++  G GI LWQ NQ++        PS+SL          N  +  GGIG         +AT TCQDCGNQAKKDCSHRRCRTCCRSRGFD
Subjt:  DDHNLLSHRTNRGGAGIHLWQNNQRT-------PPSSSL---------PNAAVTDGGIG--------GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFD

Query:  CSTHVKSTWVPASRRRERQLMAVA---AVGSAGSSSGVKKPRLVASQTTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGG
        C+THVKSTWVPA+RRRERQLM V    A GS+GS+SG KKPRL+ASQTTSHTSTSNTTPPRSLDTSSS QDA F++TLPGQ+RAPAVFKCVRVTAV+DG 
Subjt:  CSTHVKSTWVPASRRRERQLMAVA---AVGSAGSSSGVKKPRLVASQTTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGG

Query:  DEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAAS-GVGLPGFLGGSNYGNQIS
        DE+AYQAVVKIGGHVFKGLL+DQG+E+ D FPNVSELHLGDGGS  GGR  RN GS+SSPLVDPSDVY+ AAS G G+PGFLGG NYGNQIS
Subjt:  DEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAAS-GVGLPGFLGGSNYGNQIS

TrEMBL top hitse value%identityAlignment
A0A0A0KF01 Uncharacterized protein3.7e-9669.82Show/hide
Query:  DDHNLLSHRTNRGGAGIHLWQNNQ---RTPPSSSLPNAAVTD-----GGIGG--------AATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKST
        ++ N   +R+NRGG GI   Q+ Q   +  PS SL + + T+     GGIGG        +AT TCQDCGNQAKKDCSHRRCRTCCRSRGFDC+THVKST
Subjt:  DDHNLLSHRTNRGGAGIHLWQNNQ---RTPPSSSLPNAAVTD-----GGIGG--------AATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKST

Query:  WVPASRRRERQLMAV----AAVGSAGSSSGVKKPRLVASQTTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQA
        WVPA+RRRERQLMAV    AA GS+ S+SG KKPRL+ SQTTSHTSTSNTTPPRSLDTSSS QDA  ++ LPGQ+RA AVFKCVRVTAVDDG DE+AY A
Subjt:  WVPASRRRERQLMAV----AAVGSAGSSSGVKKPRLVASQTTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQA

Query:  VVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAASGV-GLPGFLGGSNYGNQIS
        +VKIGGHVFKG L+DQG+E+ D FPNVSELHLGDGG GGG    RN GS+SSPLVDPSDVY+ A SG  G+PGFLGGSNYGNQIS
Subjt:  VVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAASGV-GLPGFLGGSNYGNQIS

A0A5A7V0Q8 Protein LATERAL ROOT PRIMORDIUM 1-like isoform X11.2e-9468.77Show/hide
Query:  DDHNLLSHRTNRGGAGIHLWQNNQ---RTPPSSSLPNAAVTD-----GGIGG--------AATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKST
        ++ NL  +R++  G GI   Q+ Q   +  PS SL + + T+     GGIGG        +AT TCQDCGNQAKKDCSHRRCRTCCRSRGFDC+THVKST
Subjt:  DDHNLLSHRTNRGGAGIHLWQNNQ---RTPPSSSLPNAAVTD-----GGIGG--------AATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKST

Query:  WVPASRRRERQLMAV----AAVGSAGSSSGVKKPRLVASQTTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQA
        WVPA+RRRERQLMAV    AA GS+ S+SG KKPRL+ SQTTSHTSTSNTTPPRSLDTSSS QD   ++ LPGQ+RA AVFKCVRVTAVDDG DE+AY A
Subjt:  WVPASRRRERQLMAV----AAVGSAGSSSGVKKPRLVASQTTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQA

Query:  VVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAASGV-GLPGFLGGSNYGNQIS
        +VKIGGHVFKG L+DQG+E+ D FPNVSELHLGDG  GGG    RN GS+SSPLVDPSDVY+ AASG  G+PGFLGGSNYGNQIS
Subjt:  VVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAASGV-GLPGFLGGSNYGNQIS

A0A6J1H2U0 protein LATERAL ROOT PRIMORDIUM 1-like2.8e-9661.45Show/hide
Query:  MLGLRDVLLVAP-------------NLISDH----------------------------DDHNLLSHRTNRGGAGIHLWQNNQ--RTPPSS--------S
        M+GLRDV +VAP             NL+SD                             ++ NLLS+R++  G GI LWQ N   +  PSS        S
Subjt:  MLGLRDVLLVAP-------------NLISDH----------------------------DDHNLLSHRTNRGGAGIHLWQNNQ--RTPPSS--------S

Query:  LPNAAVTDGGIG--------GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAV---AAVGSAGSSSGVKKPRLVASQ
          N  + D GIG         +AT TCQDCGNQAKKDCSHRRCRTCCRSRGFDC+THVKSTWVPA+RRRERQLM V   AA GS+ S+SG KK RL+ASQ
Subjt:  LPNAAVTDGGIG--------GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAV---AAVGSAGSSSGVKKPRLVASQ

Query:  TTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGG
        TTS TSTSNTTPPRSLDTSSS QDA F + LPGQ+RAPAVFKCVRVTAVDDG DE+AYQAVVKIGGH+FKG L+DQG+E  D+FPNVSELHLGDG  GG 
Subjt:  TTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGG

Query:  GRTIRNGGSTSSPLVDPSDVYDVAAS-GVGLPGFLGGSNYGNQIS
         R  RNG S+SSPLVDPSDVY+ AA+ G G P FLGGSNYGNQIS
Subjt:  GRTIRNGGSTSSPLVDPSDVYDVAAS-GVGLPGFLGGSNYGNQIS

A0A6J1JCY6 protein LATERAL ROOT PRIMORDIUM 1-like1.8e-9560.62Show/hide
Query:  MLGLRDVLLVA-------------PNLISDH--------------------------------DDHNLLSHRTNRGGAGIHLWQNNQRT-------PPSS
        M+GLRDV +VA             PNLISD                                 ++ NLL  R+   G GI LWQ NQ++        PSS
Subjt:  MLGLRDVLLVA-------------PNLISDH--------------------------------DDHNLLSHRTNRGGAGIHLWQNNQRT-------PPSS

Query:  SLP----NAAVTD----GGIG--------GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAV---AAVGSAGSSSGV
        SL     NA+ T+    GGIG         +AT TCQDCGNQAKKDCS  RCRTCCRSRGFDC+THVKSTWVPA+RRRERQLMA+   AA GS+GS+SG 
Subjt:  SLP----NAAVTD----GGIG--------GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAV---AAVGSAGSSSGV

Query:  KKPRLVASQTTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELH
        KKPRL+ASQTTSHTSTSNTTPP S+DTSSS QDA F++ LPGQ+RAPAVFKCVRVTAVDDG DE+AYQAVVKIGGHVFKG L+DQG+++ D FPNVSELH
Subjt:  KKPRLVASQTTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELH

Query:  LGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAASG-VGLPGFLGGSNYGNQI
        L DG  GGG R  RNG  +S+P VDPSDVY+VAASG  G PGFLGGSNYGNQI
Subjt:  LGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAASG-VGLPGFLGGSNYGNQI

A0A6J1K371 protein LATERAL ROOT PRIMORDIUM 1-like2.7e-9962.21Show/hide
Query:  MLGLRDVLLVAP-------------NLISDH----------------------------DDHNLLSHRTNRGGAGIHLWQNNQ--RTPPSS--------S
        M+GLRDV +VAP             NL+SD                             ++ NLLS+R++  G GI LWQ N   +  PSS        S
Subjt:  MLGLRDVLLVAP-------------NLISDH----------------------------DDHNLLSHRTNRGGAGIHLWQNNQ--RTPPSS--------S

Query:  LPNAAVTDGGIG--------GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAV---AAVGSAGSSSGVKKPRLVASQ
          N  + D GIG         +AT TCQDCGNQAKKDCSHRRCRTCCRSRGFDC+THVKSTWVPA+RRRERQLM V   AA GS+GS+SG KKPRL+ASQ
Subjt:  LPNAAVTDGGIG--------GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAV---AAVGSAGSSSGVKKPRLVASQ

Query:  TTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGG
        TTS TSTSNTTPPRSLDTSSS QDA F + LPGQ+RAPAVFKCVRVTAVDDG DE+AYQAVVKIGGH+FKG L+DQG+E  D+FPNVSELHLGDG  GG 
Subjt:  TTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGG

Query:  GRTIRNGGSTSSPLVDPSDVYDVAASGVGLPGFLGGSNYGNQIS
         R  RNG S+SSPLVDPSDVY+ AA+G G P FLGGSNYGNQIS
Subjt:  GRTIRNGGSTSSPLVDPSDVYDVAASGVGLPGFLGGSNYGNQIS

SwissProt top hitse value%identityAlignment
K4B6C9 Protein EXPRESSION OF TERPENOIDS 11.6e-3239.82Show/hide
Query:  GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGSSSGVKKPRLVASQTTSHTSTSNTTPPRSLDTSSSLQ
        G    +CQDCGNQAKKDC H RCRTCC+SRGF C THVKSTWVPA++RRERQ   +AA+                 +     S S+    R    ++ L+
Subjt:  GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGSSSGVKKPRLVASQTTSHTSTSNTTPPRSLDTSSSLQ

Query:  DATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDV
           F    P ++R  AVF+C+++++++D  D+ AYQA V IGGHVFKG+L+DQG ES  Q+ N+     GD  SGG    +++    S+ +   +     
Subjt:  DATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDV

Query:  AASGVGLPGFLGGSNYGNQIS
         A+  G   FL  S +   +S
Subjt:  AASGVGLPGFLGGSNYGNQIS

O65517 Protein SHI RELATED SEQUENCE 24.8e-3745.71Show/hide
Query:  TATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRER--QLMAVAAVGSAGSSS------GVKKPRLVASQTTSHTSTSNTTPPRSLDT
        T +C+DCGNQAKKDC+H RCRTCC+SRGFDCSTHV+STW+P +RRRER  QL    + G  GS S      G   P+     T   TS+S+  P  S   
Subjt:  TATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRER--QLMAVAAVGSAGSSS------GVKKPRLVASQTTSHTSTSNTTPPRSLDT

Query:  SSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGD-EFAYQAVVKIGGHVFKGLLHDQGIESE--DQFPNVSELHLGDGGSGGGGR-------TIRNGG
           + +A+F    PG++ + A+F+CV+++ VDDGGD ++AYQ  V IGGH+FKG+L+DQG ES         S+      G GGGG        T   GG
Subjt:  SSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGD-EFAYQAVVKIGGHVFKGLLHDQGIESE--DQFPNVSELHLGDGGSGGGGR-------TIRNGG

Query:  STSSPLVDPS
         +S+  VDP+
Subjt:  STSSPLVDPS

Q94CK9 Protein LATERAL ROOT PRIMORDIUM 12.5e-6558.61Show/hide
Query:  IHLWQNNQRTPPSSSLPNAAVTDGGIGGAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGS----SSGVK
        +H    NQ T  +SS  + +    G G + TATCQDCGNQAKK+C  RRCRTCC+SRGFDCSTHVKSTWV A+RRRERQ+M   A  +AGS    SSG K
Subjt:  IHLWQNNQRTPPSSSLPNAAVTDGGIGGAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGS----SSGVK

Query:  KPRLVAS------QTTSHTSTSNTTPPRSLDTSSSLQD-ATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFP
        KPR+V S      Q TSHTSTSN TPP+S +TSSS QD    R+  PGQ+RA AVFKCVRVTAV+DG DE+AYQAVVKIGGHVFKG L+DQG+E ++ FP
Subjt:  KPRLVAS------QTTSHTSTSNTTPPRSLDTSSSLQD-ATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFP

Query:  NVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAASGVG
        ++S+LHL      GG     NG S S+P++DP +V      G G
Subjt:  NVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAASGVG

Q9SD40 Protein SHI RELATED SEQUENCE 12.0e-3545.08Show/hide
Query:  GGIGGAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGSSSGVKKPRLVASQTTSHTSTSNTTPPRSLDTS
        G  GG+   +CQDCGNQAKKDCSH RCRTCC+SRGF+CSTHV+STWVPA++RRERQ              G   P+       +  +TS++     + + 
Subjt:  GGIGGAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGSSSGVKKPRLVASQTTSHTSTSNTTPPRSLDTS

Query:  SSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGGGRTIRNGGSTSS
        S L+   F    P ++ + AVF+CVRV++V+DG +EFAYQ  V IGGH+FKG+L+D                LG G SGGGG  +   G +SS
Subjt:  SSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGGGRTIRNGGSTSS

Q9XGX0 Protein SHORT INTERNODES4.7e-3243.9Show/hide
Query:  GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGSSSGVKKPRLVASQTTSH-TSTSNTTPPRSLDTSSSL
        G+   +CQDCGNQ+KKDCSH RCRTCC+SRG DC THVKSTWVPA++RRERQ     + G      G   P+    +  +  TS + T  P   + +S L
Subjt:  GAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGSSSGVKKPRLVASQTTSH-TSTSNTTPPRSLDTSSSL

Query:  QDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQG-IESEDQFPNVSELHLGDGG----SGGGGRTIRNG--GSTSSPLV
        +   F    P ++ + AVF+CVRV++VDD  +E+AY+  V IGGHVFKG+L+DQG  E          L+L   G    S     +  NG  GSTS   +
Subjt:  QDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQG-IESEDQFPNVSELHLGDGG----SGGGGRTIRNG--GSTSSPLV

Query:  DPSDV
        DP+ +
Subjt:  DPSDV

Arabidopsis top hitse value%identityAlignment
AT3G51060.1 Lateral root primordium (LRP) protein-related1.4e-3645.08Show/hide
Query:  GGIGGAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGSSSGVKKPRLVASQTTSHTSTSNTTPPRSLDTS
        G  GG+   +CQDCGNQAKKDCSH RCRTCC+SRGF+CSTHV+STWVPA++RRERQ              G   P+       +  +TS++     + + 
Subjt:  GGIGGAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGSSSGVKKPRLVASQTTSHTSTSNTTPPRSLDTS

Query:  SSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGGGRTIRNGGSTSS
        S L+   F    P ++ + AVF+CVRV++V+DG +EFAYQ  V IGGH+FKG+L+D                LG G SGGGG  +   G +SS
Subjt:  SSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGGGRTIRNGGSTSS

AT4G36260.1 Lateral root primordium (LRP) protein-related3.4e-3845.71Show/hide
Query:  TATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRER--QLMAVAAVGSAGSSS------GVKKPRLVASQTTSHTSTSNTTPPRSLDT
        T +C+DCGNQAKKDC+H RCRTCC+SRGFDCSTHV+STW+P +RRRER  QL    + G  GS S      G   P+     T   TS+S+  P  S   
Subjt:  TATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRER--QLMAVAAVGSAGSSS------GVKKPRLVASQTTSHTSTSNTTPPRSLDT

Query:  SSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGD-EFAYQAVVKIGGHVFKGLLHDQGIESE--DQFPNVSELHLGDGGSGGGGR-------TIRNGG
           + +A+F    PG++ + A+F+CV+++ VDDGGD ++AYQ  V IGGH+FKG+L+DQG ES         S+      G GGGG        T   GG
Subjt:  SSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGD-EFAYQAVVKIGGHVFKGLLHDQGIESE--DQFPNVSELHLGDGGSGGGGR-------TIRNGG

Query:  STSSPLVDPS
         +S+  VDP+
Subjt:  STSSPLVDPS

AT5G12330.1 Lateral root primordium (LRP) protein-related1.8e-6658.61Show/hide
Query:  IHLWQNNQRTPPSSSLPNAAVTDGGIGGAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGS----SSGVK
        +H    NQ T  +SS  + +    G G + TATCQDCGNQAKK+C  RRCRTCC+SRGFDCSTHVKSTWV A+RRRERQ+M   A  +AGS    SSG K
Subjt:  IHLWQNNQRTPPSSSLPNAAVTDGGIGGAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGS----SSGVK

Query:  KPRLVAS------QTTSHTSTSNTTPPRSLDTSSSLQD-ATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFP
        KPR+V S      Q TSHTSTSN TPP+S +TSSS QD    R+  PGQ+RA AVFKCVRVTAV+DG DE+AYQAVVKIGGHVFKG L+DQG+E ++ FP
Subjt:  KPRLVAS------QTTSHTSTSNTTPPRSLDTSSSLQD-ATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFP

Query:  NVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAASGVG
        ++S+LHL      GG     NG S S+P++DP +V      G G
Subjt:  NVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAASGVG

AT5G12330.2 Lateral root primordium (LRP) protein-related1.8e-6658.61Show/hide
Query:  IHLWQNNQRTPPSSSLPNAAVTDGGIGGAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGS----SSGVK
        +H    NQ T  +SS  + +    G G + TATCQDCGNQAKK+C  RRCRTCC+SRGFDCSTHVKSTWV A+RRRERQ+M   A  +AGS    SSG K
Subjt:  IHLWQNNQRTPPSSSLPNAAVTDGGIGGAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGS----SSGVK

Query:  KPRLVAS------QTTSHTSTSNTTPPRSLDTSSSLQD-ATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFP
        KPR+V S      Q TSHTSTSN TPP+S +TSSS QD    R+  PGQ+RA AVFKCVRVTAV+DG DE+AYQAVVKIGGHVFKG L+DQG+E ++ FP
Subjt:  KPRLVAS------QTTSHTSTSNTTPPRSLDTSSSLQD-ATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFP

Query:  NVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAASGVG
        ++S+LHL      GG     NG S S+P++DP +V      G G
Subjt:  NVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAASGVG

AT5G12330.4 Lateral root primordium (LRP) protein-related1.8e-6658.61Show/hide
Query:  IHLWQNNQRTPPSSSLPNAAVTDGGIGGAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGS----SSGVK
        +H    NQ T  +SS  + +    G G + TATCQDCGNQAKK+C  RRCRTCC+SRGFDCSTHVKSTWV A+RRRERQ+M   A  +AGS    SSG K
Subjt:  IHLWQNNQRTPPSSSLPNAAVTDGGIGGAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGS----SSGVK

Query:  KPRLVAS------QTTSHTSTSNTTPPRSLDTSSSLQD-ATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFP
        KPR+V S      Q TSHTSTSN TPP+S +TSSS QD    R+  PGQ+RA AVFKCVRVTAV+DG DE+AYQAVVKIGGHVFKG L+DQG+E ++ FP
Subjt:  KPRLVAS------QTTSHTSTSNTTPPRSLDTSSSLQD-ATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFP

Query:  NVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAASGVG
        ++S+LHL      GG     NG S S+P++DP +V      G G
Subjt:  NVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAASGVG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGGCCTCCGCGACGTTCTCCTCGTCGCTCCTAATCTCATCTCCGATCACGACGATCACAACCTGTTGAGCCATCGGACCAACAGAGGCGGCGCTGGGATCCACCT
CTGGCAGAACAATCAGAGAACGCCGCCGTCGTCTTCTCTCCCCAACGCCGCTGTCACCGACGGTGGGATCGGCGGCGCGGCGACGGCCACGTGCCAGGACTGTGGGAACC
AGGCGAAGAAGGATTGCAGCCATAGGAGATGCAGGACCTGCTGCCGGAGCCGAGGCTTTGATTGCTCGACTCACGTGAAGAGCACGTGGGTCCCTGCTTCGCGGCGGCGA
GAGCGCCAGCTCATGGCGGTCGCCGCCGTGGGTTCGGCCGGATCCTCCTCCGGTGTTAAGAAACCGCGACTTGTTGCTTCTCAAACCACTTCTCACACTTCCACTTCCAA
TACAACTCCGCCTAGAAGCCTTGATACCAGCTCCAGTCTCCAAGATGCTACATTTAGAGACACATTACCAGGGCAACTGCGAGCACCTGCGGTGTTCAAATGCGTGAGAG
TAACAGCGGTGGACGACGGTGGCGACGAGTTCGCCTATCAAGCAGTGGTCAAAATTGGGGGACATGTTTTCAAAGGGTTATTACACGACCAGGGCATCGAATCCGAAGAT
CAGTTCCCGAATGTATCGGAATTGCATTTGGGCGATGGCGGCAGCGGTGGTGGTGGTAGAACCATTAGAAATGGTGGTTCTACTTCTTCTCCACTTGTTGATCCGTCTGA
TGTTTATGATGTGGCCGCCTCCGGCGTCGGTTTGCCGGGTTTTCTCGGTGGTTCGAATTATGGTAATCAAATCAGCTAA
mRNA sequenceShow/hide mRNA sequence
GAAAAAAAAAACTCTTTAGCTTCCTGGCTGAAATTTTGAGTGAATTATTGGAGAGAGATTCAGAAAAAAAAGGAAAAAGAAAAAAAAAATGAAGATTGAAAGTTGAAACC
CACTTGAACTCCTCTCTCAAGAAAAGGAAAAAAAGGGTTTTTAGGAATAGAAGTGAATGGGAGAGTTTCCAATTTGAAAGGTTGTTTAAAATTCTACCATCTTTTTTCTC
TTTTGAAAAAGCCAAAGTTTATGGCAGTGAAGAAGAAGAAGCAGCAGCAGCAGCAGTGGCAGAAGCAGAAGCAATAACCTTTGCAGTGTTTAAAATCAAAACCCCCATTA
ATTATAATTTTGCCCTTTTGTTTTCTTCTTCATCTTCTTCTTCTTCCTTCTTTTCTGCCCACAAAATCTCTCTGCTACAATTTCAGACAATACCCCACTCCCCACATAAC
TCCTACATATATTTATTCTTTTCATTTATTTTTTATTTTTTCCAATTTCTGTATTTAAATCCCATCATCATCATCCTCAGTCTTCAGTTGTGGCGACTACGAGAAGATTA
GCTTCCGATTCCGGCGCTTTTGCAGACTGGGCAGCAGCTCCGCCTTCCTCCGCCGCTGCCCGCGCTGCCCCCGATGACCTCTCTCTCGGCTTCAACGCTGCCCCTGCCCC
CGCCGCCGCCGCCGGACCGCCCTCCTCCCTGTGGTCCCTTAATTACGGCCTTGCCCCCGAAATCGGCATGCTCGGCCTCCGCGACGTTCTCCTCGTCGCTCCTAATCTCA
TCTCCGATCACGACGATCACAACCTGTTGAGCCATCGGACCAACAGAGGCGGCGCTGGGATCCACCTCTGGCAGAACAATCAGAGAACGCCGCCGTCGTCTTCTCTCCCC
AACGCCGCTGTCACCGACGGTGGGATCGGCGGCGCGGCGACGGCCACGTGCCAGGACTGTGGGAACCAGGCGAAGAAGGATTGCAGCCATAGGAGATGCAGGACCTGCTG
CCGGAGCCGAGGCTTTGATTGCTCGACTCACGTGAAGAGCACGTGGGTCCCTGCTTCGCGGCGGCGAGAGCGCCAGCTCATGGCGGTCGCCGCCGTGGGTTCGGCCGGAT
CCTCCTCCGGTGTTAAGAAACCGCGACTTGTTGCTTCTCAAACCACTTCTCACACTTCCACTTCCAATACAACTCCGCCTAGAAGCCTTGATACCAGCTCCAGTCTCCAA
GATGCTACATTTAGAGACACATTACCAGGGCAACTGCGAGCACCTGCGGTGTTCAAATGCGTGAGAGTAACAGCGGTGGACGACGGTGGCGACGAGTTCGCCTATCAAGC
AGTGGTCAAAATTGGGGGACATGTTTTCAAAGGGTTATTACACGACCAGGGCATCGAATCCGAAGATCAGTTCCCGAATGTATCGGAATTGCATTTGGGCGATGGCGGCA
GCGGTGGTGGTGGTAGAACCATTAGAAATGGTGGTTCTACTTCTTCTCCACTTGTTGATCCGTCTGATGTTTATGATGTGGCCGCCTCCGGCGTCGGTTTGCCGGGTTTT
CTCGGTGGTTCGAATTATGGTAATCAAATCAGCTAATATATGCATTTCATTCTAATATTATCTTCACGGTTGGAGGTTCTTCTCAAATCAATAGATCAGTAACTGTGTAA
TCTTATCCTCCTGATCTAACAATTTTCATCATTAATGTTTTATTTAAACCAATATTTCTGATCTAGCCTTGATTTTGTTGTTATATGTTTTTCACTTGGTGTGAGTTTCT
TTGTTTCTGGTTTTCACTAATTCCAGTTTCTTTTTTGAGTAGGGGGAGAGTTTTGAACCA
Protein sequenceShow/hide protein sequence
MLGLRDVLLVAPNLISDHDDHNLLSHRTNRGGAGIHLWQNNQRTPPSSSLPNAAVTDGGIGGAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRR
ERQLMAVAAVGSAGSSSGVKKPRLVASQTTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESED
QFPNVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAASGVGLPGFLGGSNYGNQIS