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Sed0003096 (gene) of Chayote v1 genome

Gene IDSed0003096
OrganismSechium edule (Chayote v1)
DescriptionC2H2-type domain-containing protein
Genome locationLG05:43231426..43231942
RNA-Seq ExpressionSed0003096
SyntenySed0003096
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651931.1 hypothetical protein Csa_006531, partial [Cucumis sativus]1.1e-2663.3Show/hide
Query:  MDDKSVPYNLRLRKDHKGASASTEPSKHQKQERDFQK--AGEEGYGGHLAVNYRCEKCGCSFDFETSLHSHHCRNKNDKEEMEINEVHERVGEKKTLRKR
        MDDKS+PYNLRLRKDHK +S+ TE SK  K +RDFQ+  + ++ Y  HL V+YRCEKCGCSFD E+SL SHHC+NKN++E MEI E H  +GE K+ RK+
Subjt:  MDDKSVPYNLRLRKDHKGASASTEPSKHQKQERDFQK--AGEEGYGGHLAVNYRCEKCGCSFDFETSLHSHHCRNKNDKEEMEINEVHERVGEKKTLRKR

Query:  SRKGIPIRA
        SRKG+P RA
Subjt:  SRKGIPIRA

KAG6571418.1 hypothetical protein SDJN03_30333, partial [Cucurbita argyrosperma subsp. sororia]6.1e-2565.18Show/hide
Query:  MDDKSVPYNLRLRKDHKGASASTEPSKHQKQ-ERDFQKAGEEGYGGHLAVNYRCEKCGCSFDFETSLHSHHCR--NKNDKEEMEINEVHERVGEKKTLRK
        MDDKSVPYNLRLRKDHK ASA+TE SK QKQ ER+FQ+ G    G  +   Y C+KCGCSFD + SL SHHC+  NK++KE ME NEV E +G+ K+LRK
Subjt:  MDDKSVPYNLRLRKDHKGASASTEPSKHQKQ-ERDFQKAGEEGYGGHLAVNYRCEKCGCSFDFETSLHSHHCR--NKNDKEEMEINEVHERVGEKKTLRK

Query:  RSRKGIPIRAPF
        R+RKGIP RAPF
Subjt:  RSRKGIPIRAPF

KAG7011182.1 hypothetical protein SDJN02_27980, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-2464.29Show/hide
Query:  MDDKSVPYNLRLRKDHKGASASTEPSKHQKQ-ERDFQKAGEEGYGGHLAVNYRCEKCGCSFDFETSLHSHHCR--NKNDKEEMEINEVHERVGEKKTLRK
        MD+KSVPYNLRLRKDHK ASA+TE SK QKQ ER+FQ+ G    G  +   Y C+KCGCSFD + SL SHHC+  NK++KE ME NEV E +G+ K+LRK
Subjt:  MDDKSVPYNLRLRKDHKGASASTEPSKHQKQ-ERDFQKAGEEGYGGHLAVNYRCEKCGCSFDFETSLHSHHCR--NKNDKEEMEINEVHERVGEKKTLRK

Query:  RSRKGIPIRAPF
        R+RKGIP RAPF
Subjt:  RSRKGIPIRAPF

XP_022928048.1 uncharacterized protein LOC111434950 [Cucurbita moschata]2.3e-2462.5Show/hide
Query:  MDDKSVPYNLRLRKDHKGASASTEPSKHQKQ-ERDFQKAGEEGYGGHLAVNYRCEKCGCSFDFETSLHSHHCRNKNDKE-EMEINEVHERVGEKKTLRKR
        MD+KSVPYNLRLRKDHK ASA+TE SK QKQ ER+FQ+ G    G  +   Y C+KCGCSFD + SL SHHC++ N  E E   NEV E +G+ K+LRKR
Subjt:  MDDKSVPYNLRLRKDHKGASASTEPSKHQKQ-ERDFQKAGEEGYGGHLAVNYRCEKCGCSFDFETSLHSHHCRNKNDKE-EMEINEVHERVGEKKTLRKR

Query:  SRKGIPIRAPFF
        +RKGIP RAPFF
Subjt:  SRKGIPIRAPFF

XP_023511836.1 uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo]1.6e-2565.49Show/hide
Query:  MDDKSVPYNLRLRKDHKGASASTEPSKHQKQ-ERDFQKAGEEGYGGHLAVNYRCEKCGCSFDFETSLHSHHCR--NKNDKEEMEINEVHERVGEKKTLRK
        MDDKSVPYNLRLRKDHK ASA+TE SK QKQ ER+FQ+ G    G  +   Y C+KCGCSFD + SL SHHC+  NK++KE ME NEV E +G+ K+LRK
Subjt:  MDDKSVPYNLRLRKDHKGASASTEPSKHQKQ-ERDFQKAGEEGYGGHLAVNYRCEKCGCSFDFETSLHSHHCR--NKNDKEEMEINEVHERVGEKKTLRK

Query:  RSRKGIPIRAPFF
        R+RKGIP RAPFF
Subjt:  RSRKGIPIRAPFF

TrEMBL top hitse value%identityAlignment
A0A0A0LQ06 C2H2-type domain-containing protein2.6e-2964.29Show/hide
Query:  MDDKSVPYNLRLRKDHKGASASTEPSKHQKQERDFQK--AGEEGYGGHLAVNYRCEKCGCSFDFETSLHSHHCRNKNDKEEMEINEVHERVGEKKTLRKR
        MDDKS+PYNLRLRKDHK +S+ TE SK  K +RDFQ+  + ++ Y  HL V+YRCEKCGCSFD E+SL SHHC+NKN++E MEI E H  +GE K+ RK+
Subjt:  MDDKSVPYNLRLRKDHKGASASTEPSKHQKQERDFQK--AGEEGYGGHLAVNYRCEKCGCSFDFETSLHSHHCRNKNDKEEMEINEVHERVGEKKTLRKR

Query:  SRKGIPIRAPFF
        SRKG+P RAPFF
Subjt:  SRKGIPIRAPFF

A0A6J1D739 uncharacterized protein LOC1110179591.5e-2158.97Show/hide
Query:  MDDKSVPYNLRLRKDHKGASASTEPSK-HQKQERDFQKAGEEGYGGHLAVNYRCEKCGCSFDFETSLHSHH--CRNKNDKEEMEINEVHERVGE----KK
        MDDKS+PYNLRLRK    ASA TEPSK +QK ERDFQ+ G+E  G    +  RCEKCGC F  E SLHSHH  C+NK  +E ME   V E + +    KK
Subjt:  MDDKSVPYNLRLRKDHKGASASTEPSK-HQKQERDFQKAGEEGYGGHLAVNYRCEKCGCSFDFETSLHSHH--CRNKNDKEEMEINEVHERVGE----KK

Query:  TLRKRSRKGIPIRAPFF
        + RKRSRKGIP RAP F
Subjt:  TLRKRSRKGIPIRAPFF

A0A6J1EMR9 uncharacterized protein LOC1114349501.1e-2462.5Show/hide
Query:  MDDKSVPYNLRLRKDHKGASASTEPSKHQKQ-ERDFQKAGEEGYGGHLAVNYRCEKCGCSFDFETSLHSHHCRNKNDKE-EMEINEVHERVGEKKTLRKR
        MD+KSVPYNLRLRKDHK ASA+TE SK QKQ ER+FQ+ G    G  +   Y C+KCGCSFD + SL SHHC++ N  E E   NEV E +G+ K+LRKR
Subjt:  MDDKSVPYNLRLRKDHKGASASTEPSKHQKQ-ERDFQKAGEEGYGGHLAVNYRCEKCGCSFDFETSLHSHHCRNKNDKE-EMEINEVHERVGEKKTLRKR

Query:  SRKGIPIRAPFF
        +RKGIP RAPFF
Subjt:  SRKGIPIRAPFF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGACAAGTCGGTTCCTTATAATCTCCGACTTAGGAAAGATCACAAAGGCGCTTCTGCTTCAACGGAACCTTCCAAACATCAAAAGCAAGAAAGGGATTTTCAGAA
GGCAGGTGAAGAAGGGTATGGTGGCCATTTAGCTGTTAATTACAGATGTGAAAAATGTGGATGCTCTTTTGATTTTGAAACCTCTCTTCATTCACACCATTGCAGAAATA
AAAATGATAAAGAAGAAATGGAAATTAATGAAGTGCATGAACGTGTGGGAGAGAAAAAGACCTTAAGGAAAAGAAGCAGGAAGGGAATTCCAATACGGGCTCCATTCTTT
TAG
mRNA sequenceShow/hide mRNA sequence
ATGGACGACAAGTCGGTTCCTTATAATCTCCGACTTAGGAAAGATCACAAAGGCGCTTCTGCTTCAACGGAACCTTCCAAACATCAAAAGCAAGAAAGGGATTTTCAGAA
GGCAGGTGAAGAAGGGTATGGTGGCCATTTAGCTGTTAATTACAGATGTGAAAAATGTGGATGCTCTTTTGATTTTGAAACCTCTCTTCATTCACACCATTGCAGAAATA
AAAATGATAAAGAAGAAATGGAAATTAATGAAGTGCATGAACGTGTGGGAGAGAAAAAGACCTTAAGGAAAAGAAGCAGGAAGGGAATTCCAATACGGGCTCCATTCTTT
TAG
Protein sequenceShow/hide protein sequence
MDDKSVPYNLRLRKDHKGASASTEPSKHQKQERDFQKAGEEGYGGHLAVNYRCEKCGCSFDFETSLHSHHCRNKNDKEEMEINEVHERVGEKKTLRKRSRKGIPIRAPFF