; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0003158 (gene) of Chayote v1 genome

Gene IDSed0003158
OrganismSechium edule (Chayote v1)
DescriptionThioredoxin-like protein YLS8
Genome locationLG07:39716172..39717424
RNA-Seq ExpressionSed0003158
SyntenySed0003158
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
InterPro domainsIPR004123 - Dim1 family
IPR036249 - Thioredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0750948.1 hypothetical protein [Gossypium gossypioides]3.4e-7699.3Show/hide
Query:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQ+ILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

NP_196446.1 mRNA splicing factor, thioredoxin-like U5 snRNP [Arabidopsis thaliana]1.5e-76100Show/hide
Query:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

XP_004148041.1 thioredoxin-like protein YLS8 [Cucumis sativus]3.4e-7699.3Show/hide
Query:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQ+ILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

XP_030501975.1 thioredoxin-like protein YLS8 [Cannabis sativa]2.6e-7698.59Show/hide
Query:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQSILAEEERLV+IRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

XP_040967487.1 thioredoxin-like protein YLS8 [Gossypium hirsutum]3.4e-7699.3Show/hide
Query:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQ+ILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

TrEMBL top hitse value%identityAlignment
A0A178UL96 (thale cress) hypothetical protein7.3e-77100Show/hide
Query:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

A0A7J6EY50 Uncharacterized protein1.2e-7698.59Show/hide
Query:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQSILAEEERLV+IRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

A0A803PN35 Uncharacterized protein1.2e-7698.59Show/hide
Query:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQSILAEEERLV+IRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

A0A803PN36 Uncharacterized protein1.2e-7698.59Show/hide
Query:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQSILAEEERLV+IRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

A0A803PN37 Uncharacterized protein1.2e-7698.59Show/hide
Query:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQSILAEEERLV+IRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

SwissProt top hitse value%identityAlignment
P83876 Thioredoxin-like protein 4A7.5e-7185.21Show/hide
Query:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSY+LPHLH+GW VDQ+IL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYLVDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWA++DKQE +DIIETVYRGARKGRGLV++PKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

P83877 Thioredoxin-like protein 4A7.5e-7185.21Show/hide
Query:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSY+LPHLH+GW VDQ+IL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYLVDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWA++DKQE +DIIETVYRGARKGRGLV++PKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

P87215 Mitosis protein dim12.4e-6176.06Show/hide
Query:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSY LPHLHSGW VDQ+IL+E+ERLVVIRFG D DE C++ DEVL  +AE + N AVIYLVDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINW L+DKQE IDIIET++RGARKG+GLVI+PKDYST++RY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

Q75BD8 Spliceosomal protein DIB15.1e-5166.67Show/hide
Query:  SYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNK
        S  LPHLHSGW VDQ+I+ EEERLVVIRFG D D +CM MDE+L S+AE + NFA IY+ D TEVPDFN MYEL DP TVMFF++NKH+  D GTGNNNK
Subjt:  SYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNK

Query:  INWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTK
        +N+ + +KQE IDIIETV+RGAR+ +GLV++P DY+ K
Subjt:  INWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTK

Q9FE62 Thioredoxin-like protein YLS82.0e-79100Show/hide
Query:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY

Arabidopsis top hitse value%identityAlignment
AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP1.1e-1937.96Show/hide
Query:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGT
        MSYLL  L +   +D+ I    + ++V+RFG   D  C+Q DE+LA     +  FA + LVD+ +  D     + +D    PST+ FFF   H+ +D GT
Subjt:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGT

Query:  GNNNKINWALKDKQEFIDIIETVYRGARKGRGLVIAP
         ++ K   A   KQ+FID++E +YRGA KG+ +V  P
Subjt:  GNNNKINWALKDKQEFIDIIETVYRGARKGRGLVIAP

AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP1.4e-80100Show/hide
Query:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTATTTGCTGCCGCATCTTCACTCTGGTTGGGCGGTGGATCAGTCAATCCTCGCCGAAGAAGAGCGTCTTGTCGTCATTCGGTTCGGCCATGACTGGGACGAGAC
CTGTATGCAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACGATTAAGAACTTTGCGGTAATATACCTTGTGGATATCACGGAGGTTCCCGATTTCAACACAATGTACG
AGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTCGGTACTGGAAACAACAATAAGATTAACTGGGCCCTCAAGGATAAGCAG
GAATTCATTGATATCATCGAGACTGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTGGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTATTTGCTGCCGCATCTTCACTCTGGTTGGGCGGTGGATCAGTCAATCCTCGCCGAAGAAGAGCGTCTTGTCGTCATTCGGTTCGGCCATGACTGGGACGAGAC
CTGTATGCAGATGGATGAAGTGTTGGCCTCAGTTGCAGAGACGATTAAGAACTTTGCGGTAATATACCTTGTGGATATCACGGAGGTTCCCGATTTCAACACAATGTACG
AGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTCGGTACTGGAAACAACAATAAGATTAACTGGGCCCTCAAGGATAAGCAG
GAATTCATTGATATCATCGAGACTGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTGGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTGA
Protein sequenceShow/hide protein sequence
MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQ
EFIDIIETVYRGARKGRGLVIAPKDYSTKYRY