; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0003219 (gene) of Chayote v1 genome

Gene IDSed0003219
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L28
Genome locationLG02:50385946..50387476
RNA-Seq ExpressionSed0003219
SyntenySed0003219
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001383 - Ribosomal protein L28
IPR026569 - Ribosomal protein L28/L24
IPR034704 - L28p-like
IPR037147 - Ribosomal protein L28/L24 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018806.1 50S ribosomal protein L28, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]9.3e-6186.58Show/hide
Query:  MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQ
        MA   +LG +PV +SGVMAASS+KL FR+KAN ELGFL+SQLSGIKIS +N+SL S+SPISAPLRPALQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQ
Subjt:  MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQ

Query:  FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        FVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022145908.1 50S ribosomal protein L28, chloroplastic [Momordica charantia]5.8e-6389.93Show/hide
Query:  MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQ
        MAA V+LGLSP NTSGVMAASST+L FRTK NSELGFLTSQL GIKIS +NNS   S+PISAPLRPALQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQ
Subjt:  MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQ

Query:  FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        FVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022924246.1 50S ribosomal protein L28, chloroplastic [Cucurbita moschata]9.3e-6186.58Show/hide
Query:  MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQ
        MA   +LG +PV +SGVMAASS+KL FR+KAN ELGFL+SQLSGIKIS +N+SL S+SPISAPLRPALQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQ
Subjt:  MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQ

Query:  FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        FVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022979375.1 50S ribosomal protein L28, chloroplastic [Cucurbita maxima]7.1e-6186.58Show/hide
Query:  MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQ
        MA   +LG +PV++SGVMAASS+KL FRTK N ELGFL+SQLSGIKIS +N+SL S SPISAPLRPALQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQ
Subjt:  MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQ

Query:  FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        FVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_038885053.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida]2.2e-6287.92Show/hide
Query:  MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQ
        MAA+V+LG +P  +SGVMAASSTKL+F TK NSELGFLTSQL+GIKIS +N+SL S SPISAPLRPALQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQ
Subjt:  MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQ

Query:  FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        FVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

TrEMBL top hitse value%identityAlignment
A0A1S3AWK5 50S ribosomal protein L28, chloroplastic2.7e-5885.43Show/hide
Query:  MAAYVMLGLSPVNTS-GVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPIS-APLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKK
        MAA V+ G +P  TS GVMA SSTKL FRTK NS+LGFL SQLSGIKIS +N+SL S SPIS APLRP+LQP+ARRICPFTGKKANKKNLVSFSNHKTKK
Subjt:  MAAYVMLGLSPVNTS-GVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPIS-APLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKK

Query:  LQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        LQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  LQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A5A7U1W6 50S ribosomal protein L282.7e-5885.43Show/hide
Query:  MAAYVMLGLSPVNTS-GVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPIS-APLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKK
        MAA V+ G +P  TS GVMA SSTKL FRTK NS+LGFL SQLSGIKIS +N+SL S SPIS APLRP+LQP+ARRICPFTGKKANKKNLVSFSNHKTKK
Subjt:  MAAYVMLGLSPVNTS-GVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPIS-APLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKK

Query:  LQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        LQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  LQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1CX73 50S ribosomal protein L28, chloroplastic2.8e-6389.93Show/hide
Query:  MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQ
        MAA V+LGLSP NTSGVMAASST+L FRTK NSELGFLTSQL GIKIS +NNS   S+PISAPLRPALQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQ
Subjt:  MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQ

Query:  FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        FVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1E916 50S ribosomal protein L28, chloroplastic4.5e-6186.58Show/hide
Query:  MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQ
        MA   +LG +PV +SGVMAASS+KL FR+KAN ELGFL+SQLSGIKIS +N+SL S+SPISAPLRPALQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQ
Subjt:  MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQ

Query:  FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        FVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1IT28 50S ribosomal protein L28, chloroplastic3.4e-6186.58Show/hide
Query:  MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQ
        MA   +LG +PV++SGVMAASS+KL FRTK N ELGFL+SQLSGIKIS +N+SL S SPISAPLRPALQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQ
Subjt:  MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQ

Query:  FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        FVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

SwissProt top hitse value%identityAlignment
B8HUV7 50S ribosomal protein L282.8e-2064Show/hide
Query:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        R+C  TGK+AN    VS S+ +TKKLQ VNLQ+KR+WW  GKR+V+LRLSTKALKT+E  GLD+ A++AGIDL K
Subjt:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

O22795 50S ribosomal protein L28, chloroplastic1.1e-4372.93Show/hide
Query:  MAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQP-VARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKRVWWEAGKR
        M +S+  +   T  + ELGFLTSQLSG++IS   + + +   IS P  P +QP VARRICPFTGKKAN+ N VSFSNHKTKKLQFVNLQYKRVWWEAGKR
Subjt:  MAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQP-VARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKRVWWEAGKR

Query:  FVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        FVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  FVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

P30956 50S ribosomal protein L28, chloroplastic2.6e-4575.41Show/hide
Query:  RTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKAL
        ++K +SEL F+TSQLSG+KIS + + + SS+P+S P +P+LQPVARRICPFTGKK+N+ N VS SNHKTKKLQFVNLQYKR+WWEAGKR+VKLRLSTKA+
Subjt:  RTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKAL

Query:  KTIEKNGLDAVAKKAGIDLRKE
        KTIEKNGLDAVAKKAGIDL K+
Subjt:  KTIEKNGLDAVAKKAGIDLRKE

P82245 50S ribosomal protein L28, chloroplastic1.4e-4873.83Show/hide
Query:  MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQ
        MAA  ML  +P N        S  L+ +    SELGFLTSQLSGI+ISP+      S PISAPL+P+LQPVARRICPFTGKK+NK N VS SNHKTK+LQ
Subjt:  MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQ

Query:  FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  FVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

Q8DG62 50S ribosomal protein L281.7e-2064Show/hide
Query:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        R+C  TGKKAN    +S S+ +TKKLQ VNLQ+KRVWW  GKR+V+LRLSTKA+KT+E+ GL A AK+AG+DL K
Subjt:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

Arabidopsis top hitse value%identityAlignment
AT2G33450.1 Ribosomal L28 family7.6e-4572.93Show/hide
Query:  MAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQP-VARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKRVWWEAGKR
        M +S+  +   T  + ELGFLTSQLSG++IS   + + +   IS P  P +QP VARRICPFTGKKAN+ N VSFSNHKTKKLQFVNLQYKRVWWEAGKR
Subjt:  MAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQP-VARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKRVWWEAGKR

Query:  FVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        FVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  FVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCTTACGTGATGTTAGGCTTGTCGCCGGTGAATACTTCCGGCGTAATGGCAGCGTCGTCGACGAAACTTCGTTTCAGAACTAAAGCGAATTCCGAGCTAGGGTT
CCTCACTTCTCAATTGAGCGGCATCAAAATTTCCCCCAACAACAATTCGCTGTTCTCGTCATCTCCCATTTCCGCTCCTCTCAGGCCTGCGCTTCAACCCGTCGCTCGTA
GAATCTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTGGTTTCATTCTCAAACCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAGGGTTTGG
TGGGAGGCTGGGAAGCGTTTCGTCAAACTACGCTTATCGACAAAGGCTTTGAAGACCATTGAGAAAAATGGACTCGATGCTGTGGCTAAGAAGGCAGGAATTGATCTTCG
CAAGGAATGA
mRNA sequenceShow/hide mRNA sequence
ACCAGAGGCTTCCAAAGTGACAAAGATAACGATAACAGAGAACTCTGCTCCTTAACAATGGCGGCTTACGTGATGTTAGGCTTGTCGCCGGTGAATACTTCCGGCGTAAT
GGCAGCGTCGTCGACGAAACTTCGTTTCAGAACTAAAGCGAATTCCGAGCTAGGGTTCCTCACTTCTCAATTGAGCGGCATCAAAATTTCCCCCAACAACAATTCGCTGT
TCTCGTCATCTCCCATTTCCGCTCCTCTCAGGCCTGCGCTTCAACCCGTCGCTCGTAGAATCTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTGGTTTCATTC
TCAAACCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAGGGTTTGGTGGGAGGCTGGGAAGCGTTTCGTCAAACTACGCTTATCGACAAAGGCTTTGAA
GACCATTGAGAAAAATGGACTCGATGCTGTGGCTAAGAAGGCAGGAATTGATCTTCGCAAGGAATGATTTGGTAATTCATTTCTTTAATTTTACTCTATACATTTTGAGG
AAGATCTGTCCAATTATCAACCCATGTTGTATTCTGCTGTTTTTGCTTATTTTTGTTGTTCTTAGTTTAATGTTTATTGTTATTGATAACATCATTCTTGTATCTTTGCT
TTCCTCCATTTGGCAATGAAGATTGAATCTATCCCTTTTCCTTTCTGGGTTTTATGAATGATACATCCTTGTAGGCCAGGTGTCAC
Protein sequenceShow/hide protein sequence
MAAYVMLGLSPVNTSGVMAASSTKLRFRTKANSELGFLTSQLSGIKISPNNNSLFSSSPISAPLRPALQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKRVW
WEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE