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Sed0003228 (gene) of Chayote v1 genome

Gene IDSed0003228
OrganismSechium edule (Chayote v1)
DescriptionDynein light chain
Genome locationLG03:6781253..6784304
RNA-Seq ExpressionSed0003228
SyntenySed0003228
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146325.1 dynein light chain LC6, flagellar outer arm [Momordica charantia]1.1e-5584.33Show/hide
Query:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT
        MEGAEMELERRSKFLNGLI KKKA +QQ     LN+RVRASDMPFPLQNRAF+CAR LLDSM  K D+K  ALALKKEFDS+YGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD
        HSLGGFLYFSIDKVY+LLFKTAVEP+SR TSLKD
Subjt:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD

XP_022939677.1 dynein light chain LC6, flagellar outer arm [Cucurbita moschata]2.8e-5685.07Show/hide
Query:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT
        MEGAEMELERR+KFLNGLILKKKA + Q H   LNVRVRASDMPFPLQNRAF+CAR LLDSM  K D+K LALALKKEFDS+YGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD
        HSLGGFLYFSIDKVY+LLFKTAVEP+SR  SLKD
Subjt:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD

XP_022973572.1 dynein light chain LC6, flagellar outer arm [Cucurbita maxima]4.7e-5684.33Show/hide
Query:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT
        MEGAEMELERRSKFLNGLILKKKA + Q H   LN+RVRASDMPFPLQNRAF+CAR LLDSM  K D+K LAL LKKEFDS+YGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD
        HSLGGFLYFSIDKVY+LLFKTAVEP+SR  SLKD
Subjt:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD

XP_023551552.1 dynein light chain LC6, flagellar outer arm [Cucurbita pepo subsp. pepo]1.2e-5685.82Show/hide
Query:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT
        MEGAEMELERRSKFLNGLILKKKA + Q H   LNVRVRASDMPFPLQNRAF+CAR LLDSM  K D+K LALALKKEFDS+YGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD
        HSLGGFLYFSIDKVY+LLFKTAVEP+SR  SLKD
Subjt:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD

XP_038906759.1 dynein light chain LC6, flagellar outer arm [Benincasa hispida]4.7e-5685.07Show/hide
Query:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT
        M+GAEMELERRSKFL+GLILKKKA +QQ     LNVRVRASDMPFPLQNRAF+CAR LLDSM  K D+K LALALKKEFDS+YGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD
        HSLGGFLYFSIDKVY+LLFKTAVEP+SR TSLKD
Subjt:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD

TrEMBL top hitse value%identityAlignment
A0A0A0KPF8 Dynein light chain1.9e-5584.33Show/hide
Query:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT
        M+GAEMELERRSKFLNGLILKKKA +QQ     LNVRVRASDM FPLQNRAF+CAR LLDSM  K D+K LALALKKEFDS+YGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD
        HSLGGFLYFSIDKVY+LLFKTAVEP+SR  SLKD
Subjt:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD

A0A1S3CSY6 Dynein light chain1.9e-5584.33Show/hide
Query:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT
        M+GAEMELERRSKFLNGLILKKKA +QQ     LNVRVRASDM FPLQNRAF+CAR LLDSM  K D+K LALALKKEFDS+YGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD
        HSLGGFLYFSIDKVY+LLFKTAVEP+SR  SLKD
Subjt:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD

A0A6J1CWZ8 Dynein light chain5.1e-5684.33Show/hide
Query:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT
        MEGAEMELERRSKFLNGLI KKKA +QQ     LN+RVRASDMPFPLQNRAF+CAR LLDSM  K D+K  ALALKKEFDS+YGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD
        HSLGGFLYFSIDKVY+LLFKTAVEP+SR TSLKD
Subjt:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD

A0A6J1FHG9 Dynein light chain1.3e-5685.07Show/hide
Query:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT
        MEGAEMELERR+KFLNGLILKKKA + Q H   LNVRVRASDMPFPLQNRAF+CAR LLDSM  K D+K LALALKKEFDS+YGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD
        HSLGGFLYFSIDKVY+LLFKTAVEP+SR  SLKD
Subjt:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD

A0A6J1I7W2 Dynein light chain2.3e-5684.33Show/hide
Query:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT
        MEGAEMELERRSKFLNGLILKKKA + Q H   LN+RVRASDMPFPLQNRAF+CAR LLDSM  K D+K LAL LKKEFDS+YGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD
        HSLGGFLYFSIDKVY+LLFKTAVEP+SR  SLKD
Subjt:  HSLGGFLYFSIDKVYVLLFKTAVEPMSRATSLKD

SwissProt top hitse value%identityAlignment
O02414 Dynein light chain LC6, flagellar outer arm1.2e-1446.43Show/hide
Query:  VRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYVLLFKT
        ++ +DMP  +Q  A  CA + L+  + +   K +A  +KKEFD  Y P WHCIVG +FGSYVTH    F+YF + +V VLLFK+
Subjt:  VRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYVLLFKT

O96860 Dynein light chain 2, cytoplasmic1.8e-1344.05Show/hide
Query:  VRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYVLLFKT
        ++ +DM   +Q  A  CA + L+  + +   K +A  +KKEFD  Y P WHCIVG +FGSYVTH    F+YF + +V +LLFK+
Subjt:  VRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYVLLFKT

Q22799 Dynein light chain 1, cytoplasmic1.4e-1344.05Show/hide
Query:  VRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYVLLFKT
        ++ +DM   +Q  A  CA + L+  + +   K +A  +KKEFD  Y P WHCIVG +FGSYVTH    F+YF + +V +LLFK+
Subjt:  VRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYVLLFKT

Q24117 Dynein light chain 1, cytoplasmic1.8e-1344.05Show/hide
Query:  VRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYVLLFKT
        ++ +DM   +Q  A  CA + L+  + +   K +A  +KKEFD  Y P WHCIVG +FGSYVTH    F+YF + +V +LLFK+
Subjt:  VRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYVLLFKT

Q86A88 Dynein light chain, cytoplasmic2.7e-1445.88Show/hide
Query:  VRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYVLLFK
        + V+ +DMP  +Q  A  C  +  +  + + D   +A+ +KKEFD  Y P WHCIVG SFGS+VTH    F+YF+I+K  VLLFK
Subjt:  VRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYVLLFK

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein1.7e-4873.44Show/hide
Query:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT
        MEG E+ELERRSKFLN LI KKKA++QQ      NVRVRASDMP P QNRAF+ +R +L++   K D K LA ALKK+FDSAYGPAWHCIVGTSFGSYVT
Subjt:  MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVT

Query:  HSLGGFLYFSIDKVYVLLFKTAVEPMSR
        HS GGFLYF IDKVYVLLFKTAVEP+ +
Subjt:  HSLGGFLYFSIDKVYVLLFKTAVEPMSR

AT1G52240.2 RHO guanyl-nucleotide exchange factor 111.3e-1444.32Show/hide
Query:  VRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYVLLFKTAVEP
        V  SDMP  +Q +A   A + LD +    D KS+A  +KKEFD  YG  W C+VG++FG + THS G F+YF ++ +  L+FK A  P
Subjt:  VRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYVLLFKTAVEP

AT3G16120.1 Dynein light chain type 1 family protein1.8e-1343.02Show/hide
Query:  RVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYVLLFKTA
        +V  +DMP  +Q +A   A + LD +    D+ S+A  +KKEFD  YG  W C+VGT+FG + THS G F+YF +  +  L+FK A
Subjt:  RVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYVLLFKTA

AT4G15930.1 Dynein light chain type 1 family protein5.3e-1342.86Show/hide
Query:  VRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYVLLFKT
        ++++DM   +Q  A   A    +  S +   K +A  +KKEFD  +G  WHCIVG +FGSYVTH    F+YF +D+  VLLFK+
Subjt:  VRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYVLLFKT

AT5G20110.1 Dynein light chain type 1 family protein7.6e-2863.83Show/hide
Query:  LNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYVLLFKTAVEPMS
        L VR+ A+DMP  +Q  AF CAR  LDS+  K  +K +A  LKKEFD  YGPAWHCIVG+SFGS+VTHS G F+YFS+DK+YVLLFKT V P S
Subjt:  LNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYVLLFKTAVEPMS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGAGCCGAAATGGAGCTTGAGCGGCGGAGCAAGTTTCTGAATGGCCTTATTCTCAAGAAGAAGGCCGAGGATCAGCAGCATCACGGCGGCCCTCTCAACGTTCG
CGTCAGAGCCTCCGATATGCCCTTTCCTTTGCAGAATCGCGCTTTTACCTGCGCTCGTCGACTTCTCGATTCCATGTCTCCCAAGCCCGACACCAAATCCCTCGCTCTTG
CCCTCAAAAAGGAATTCGATTCTGCCTATGGTCCTGCTTGGCATTGCATTGTGGGAACAAGCTTCGGCTCCTATGTAACACATTCTCTGGGTGGCTTCTTGTATTTTTCA
ATAGATAAAGTTTACGTCCTCCTATTCAAAACAGCAGTCGAGCCTATGTCGCGTGCAACATCGTTAAAAGATTGA
mRNA sequenceShow/hide mRNA sequence
AATTTGTCTTTGACCGATGCCGAGGTTGAAAGACAGAATCCCAGAAACAGCAACCAAATAAAATTCAAAAATTTGGGATTTTGCTCTCCAAATACAACAGCCCCTCCCTC
GTCTTCTTTGCGGCATCGCGTTTGGTTGGTTGGTGGTTGATGAGATTGTAGTGTTGGTGGGTCCACCATGGAAGGAGCCGAAATGGAGCTTGAGCGGCGGAGCAAGTTTC
TGAATGGCCTTATTCTCAAGAAGAAGGCCGAGGATCAGCAGCATCACGGCGGCCCTCTCAACGTTCGCGTCAGAGCCTCCGATATGCCCTTTCCTTTGCAGAATCGCGCT
TTTACCTGCGCTCGTCGACTTCTCGATTCCATGTCTCCCAAGCCCGACACCAAATCCCTCGCTCTTGCCCTCAAAAAGGAATTCGATTCTGCCTATGGTCCTGCTTGGCA
TTGCATTGTGGGAACAAGCTTCGGCTCCTATGTAACACATTCTCTGGGTGGCTTCTTGTATTTTTCAATAGATAAAGTTTACGTCCTCCTATTCAAAACAGCAGTCGAGC
CTATGTCGCGTGCAACATCGTTAAAAGATTGAGTCTCTCAATTCTAAACTATGATTGAATAGGCATAAAATTGATCATAAAATCGAACAGCTGCTGTAGTCATGAGCGAA
AACAACCAGGTTCAGTCATACTATTCTTTTTGGTTGTATGTCTACCATCGACTTTATCTTCTTTAAGAAACTGTGTGTGAAGGCTCTGCTGTGATATATGTTGTGCATTG
ATTTACTGGCTGATTAAGAAATTTTGTTGTGTGCAGTACATCATCTAGGATTTCTGATGTTGTAAGATTTTATGTTTATTTGATTTGTAAGGTTTGTGTGTCACCACTAT
ACCAACCAAAATAATTAGCTTTTTGCTGGTACAAGTCATTACTTGAAGAGACAACATCACACG
Protein sequenceShow/hide protein sequence
MEGAEMELERRSKFLNGLILKKKAEDQQHHGGPLNVRVRASDMPFPLQNRAFTCARRLLDSMSPKPDTKSLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSLGGFLYFS
IDKVYVLLFKTAVEPMSRATSLKD