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Sed0003249 (gene) of Chayote v1 genome

Gene IDSed0003249
OrganismSechium edule (Chayote v1)
DescriptionB3 domain-containing protein
Genome locationLG01:833573..834231
RNA-Seq ExpressionSed0003249
SyntenySed0003249
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571413.1 B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. sororia]1.0e-2153.92Show/hide
Query:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII
        FFK+IL   + + +KL IP KF R+H E   T+E+RLKV  G EWKV L K + +I F KGWEE  K+YS+   H L FRYEGN CF+V I++K+ SEI 
Subjt:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII

Query:  YP
        YP
Subjt:  YP

XP_022158241.1 B3 domain-containing protein At4g01580-like [Momordica charantia]3.3e-2039.76Show/hide
Query:  MASSS----YAGHVESDASFFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRY
        MASSS    + G   +   FFK+IL  H     KLN+P KF   H E    +E+ LKV  G EWKV +EK NG++ F KGW++  ++YS+   + L FRY
Subjt:  MASSS----YAGHVESDASFFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRY

Query:  EGNFCFNVAIYEKSCSEIIYPKPARGDREEDHCDKDDEYWFENEYEDEEMMEDEKRYRRKDKIIQT
        E N CF+V I++ S SEI YP    GD   +            E+ED+ ++    + RR+ KI QT
Subjt:  EGNFCFNVAIYEKSCSEIIYPKPARGDREEDHCDKDDEYWFENEYEDEEMMEDEKRYRRKDKIIQT

XP_022928091.1 B3 domain-containing transcription factor VRN1-like [Cucurbita moschata]1.0e-2153.92Show/hide
Query:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII
        FFK+IL   + + +KL IP KF R+H E   T+E+RLKV  G EWKV L K + +I F KGWEE  K+YS+   H L FRYEGN CF+V I++K+ SEI 
Subjt:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII

Query:  YP
        YP
Subjt:  YP

XP_022971710.1 B3 domain-containing transcription factor VRN1-like [Cucurbita maxima]3.0e-2153.92Show/hide
Query:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII
        FFK+IL   +   +KL IP KF R+H E   T+E+RLKV  G EWKV L K + +I F KGWEE  K+YS+   H L FRYEGN CF+V I++K+ SEI 
Subjt:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII

Query:  YP
        YP
Subjt:  YP

XP_023513190.1 B3 domain-containing transcription factor VRN1-like [Cucurbita pepo subsp. pepo]1.7e-2153.92Show/hide
Query:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII
        FFK+IL   +   +KL IP KF R+H E   T+E+RLKV  G EWKV L K + +I F KGWEE  K+YS+   H L FRYEGN CF+V I++K+ SEI 
Subjt:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII

Query:  YP
        YP
Subjt:  YP

TrEMBL top hitse value%identityAlignment
A0A1U8JPW1 B3 domain-containing transcription factor VRN1-like4.0e-1643.9Show/hide
Query:  MASSSY------AGHVESDASFFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVF
        MASSSY         + +   FFKIIL   +  + KL +P KF +       +  M L V  G  WKV L K NG+I F  GW E S +YSL F HLLVF
Subjt:  MASSSY------AGHVESDASFFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVF

Query:  RYEGNFCFNVAIYEKSCSEIIYP
        RY+GN  F+V I++++ +EI+YP
Subjt:  RYEGNFCFNVAIYEKSCSEIIYP

A0A6A4MMS1 Uncharacterized protein (Fragment)3.1e-1645.38Show/hide
Query:  ASSSYAGHVESDASFFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFC
        ++ S +  V++   FFKII +S  P   KL IP+KF  +  +      + LKV  G  WKV LE+ NG +    GW+E +KYYS+ F HLLVFRY+GN  
Subjt:  ASSSYAGHVESDASFFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFC

Query:  FNVAIYEKSCSEIIYPKPA
        FNV I++ S SEI YP  A
Subjt:  FNVAIYEKSCSEIIYPKPA

A0A6J1E0D8 B3 domain-containing protein At4g01580-like1.6e-2039.76Show/hide
Query:  MASSS----YAGHVESDASFFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRY
        MASSS    + G   +   FFK+IL  H     KLN+P KF   H E    +E+ LKV  G EWKV +EK NG++ F KGW++  ++YS+   + L FRY
Subjt:  MASSS----YAGHVESDASFFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRY

Query:  EGNFCFNVAIYEKSCSEIIYPKPARGDREEDHCDKDDEYWFENEYEDEEMMEDEKRYRRKDKIIQT
        E N CF+V I++ S SEI YP    GD   +            E+ED+ ++    + RR+ KI QT
Subjt:  EGNFCFNVAIYEKSCSEIIYPKPARGDREEDHCDKDDEYWFENEYEDEEMMEDEKRYRRKDKIIQT

A0A6J1EJA7 B3 domain-containing transcription factor VRN1-like4.9e-2253.92Show/hide
Query:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII
        FFK+IL   + + +KL IP KF R+H E   T+E+RLKV  G EWKV L K + +I F KGWEE  K+YS+   H L FRYEGN CF+V I++K+ SEI 
Subjt:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII

Query:  YP
        YP
Subjt:  YP

A0A6J1I6H9 B3 domain-containing transcription factor VRN1-like1.4e-2153.92Show/hide
Query:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII
        FFK+IL   +   +KL IP KF R+H E   T+E+RLKV  G EWKV L K + +I F KGWEE  K+YS+   H L FRYEGN CF+V I++K+ SEI 
Subjt:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII

Query:  YP
        YP
Subjt:  YP

SwissProt top hitse value%identityAlignment
Q67VL7 Putative B3 domain-containing protein Os06g06325002.0e-0430.95Show/hide
Query:  DSTKLNIPLKFAREHEEIFHT---QEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIY
        D  K+ IP KF ++H    +T   Q   +    G  W+V L++    +L   GW      + L+  ++L+FRYEGN  F V ++
Subjt:  DSTKLNIPLKFAREHEEIFHT---QEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIY

Q851V5 Putative B3 domain-containing protein Os03g06216009.6e-0729Show/hide
Query:  ESDASFFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKS
        + D  FFK+++        ++ IP KFA    +      ++LK + G    V ++K + +++ +KGW E +  + +     LVFRY GN  F V I++ S
Subjt:  ESDASFFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKS

Q8L3W1 B3 domain-containing transcription factor VRN15.4e-1033.33Show/hide
Query:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII
        FF  ++ S +    +L +P KF  + ++   +  + L V  G  W+V L K + +I F  GW+E    YS+   +LL+FRYEGN  F+V I+  S SEI 
Subjt:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII

Query:  YPKPARGDREEDHCDKDDEYWFENEYEDEEMM
        Y      D   +H  K    + + E ED E++
Subjt:  YPKPARGDREEDHCDKDDEYWFENEYEDEEMM

Q9SZ05 B3 domain-containing protein At4g344002.0e-0430.17Show/hide
Query:  MASSSYAGHVESDASFFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNF
        MASS  +   +    FF + ++  S  S  + IP+ +  +H      + + L+  GG  WKVA E  +  +LFS+GW +  +  +L     L F Y G  
Subjt:  MASSSYAGHVESDASFFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNF

Query:  CFNVAIYE--KSCSEI
         F V+I+    +C EI
Subjt:  CFNVAIYE--KSCSEI

Q9XIB4 B3 domain-containing protein At1g494754.4e-1230.49Show/hide
Query:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII
        F KIIL S   +   + +P +F R   ++  T  + L+   G +  + +++I   + F KGW E ++ +SL+  H L F YEG+ CF V I++ S SEI 
Subjt:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII

Query:  YPKPARGDREEDHCDKDDEYW--FENEYEDEEMMEDEKRYRRKDKIIQTLPSKPAGKTKSKGIV
        YP     D  E+  D D++ +  FE+  +D E+++ ++  ++K K       KP    KS+ ++
Subjt:  YPKPARGDREEDHCDKDDEYW--FENEYEDEEMMEDEKRYRRKDKIIQTLPSKPAGKTKSKGIV

Arabidopsis top hitse value%identityAlignment
AT1G49475.1 AP2/B3-like transcriptional factor family protein3.2e-1330.49Show/hide
Query:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII
        F KIIL S   +   + +P +F R   ++  T  + L+   G +  + +++I   + F KGW E ++ +SL+  H L F YEG+ CF V I++ S SEI 
Subjt:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII

Query:  YPKPARGDREEDHCDKDDEYW--FENEYEDEEMMEDEKRYRRKDKIIQTLPSKPAGKTKSKGIV
        YP     D  E+  D D++ +  FE+  +D E+++ ++  ++K K       KP    KS+ ++
Subjt:  YPKPARGDREEDHCDKDDEYW--FENEYEDEEMMEDEKRYRRKDKIIQTLPSKPAGKTKSKGIV

AT3G18990.1 AP2/B3-like transcriptional factor family protein3.9e-1133.33Show/hide
Query:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII
        FF  ++ S +    +L +P KF  + ++   +  + L V  G  W+V L K + +I F  GW+E    YS+   +LL+FRYEGN  F+V I+  S SEI 
Subjt:  FFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCSEII

Query:  YPKPARGDREEDHCDKDDEYWFENEYEDEEMM
        Y      D   +H  K    + + E ED E++
Subjt:  YPKPARGDREEDHCDKDDEYWFENEYEDEEMM

AT4G34400.1 AP2/B3-like transcriptional factor family protein1.4e-0530.17Show/hide
Query:  MASSSYAGHVESDASFFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNF
        MASS  +   +    FF + ++  S  S  + IP+ +  +H      + + L+  GG  WKVA E  +  +LFS+GW +  +  +L     L F Y G  
Subjt:  MASSSYAGHVESDASFFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNF

Query:  CFNVAIYE--KSCSEI
         F V+I+    +C EI
Subjt:  CFNVAIYE--KSCSEI

AT5G18000.1 VERDANDI3.5e-0428.25Show/hide
Query:  SFFKII-LNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEK-INGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCS
        +FFKI+    HS +  ++ IP    R   +   + +M L+V  G  W+V + K  N   +  +GW +      L     L F +E N CFNV I+E   +
Subjt:  SFFKII-LNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEK-INGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKSCS

Query:  EIIYPK------PARGDREEDHC-------DKDDEYWFENEYEDEEMMEDEK-RYRRKDKIIQTLPSKPAGKT-KSK
        E++ P+        R  REE          +++ E W E+ +   +  E    R  +K ++   L  K A KT KSK
Subjt:  EIIYPK------PARGDREEDHC-------DKDDEYWFENEYEDEEMMEDEK-RYRRKDKIIQTLPSKPAGKT-KSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCTTCCTACGCTGGCCATGTTGAGTCCGATGCCTCGTTTTTTAAGATCATTCTAAATTCCCACTCGCCCGATTCAACAAAGTTGAATATTCCACTGAAATT
TGCAAGAGAACACGAAGAGATTTTCCATACCCAAGAGATGCGTCTTAAAGTTAAGGGAGGAGTTGAATGGAAAGTGGCATTAGAAAAAATTAATGGAAGAATATTATTTT
CTAAAGGATGGGAAGAAATTTCTAAATATTACTCTCTTGCATTTGCTCACTTGTTAGTTTTTCGATACGAAGGGAATTTTTGCTTTAATGTTGCCATATATGAAAAAAGT
TGTTCTGAAATTATATATCCAAAACCCGCACGAGGAGACCGTGAAGAAGATCATTGTGACAAAGATGATGAATATTGGTTTGAAAATGAATATGAAGATGAAGAAATGAT
GGAAGATGAAAAGAGATATAGGAGAAAAGATAAAATTATTCAAACTTTACCTTCGAAGCCGGCGGGTAAAACTAAGAGTAAAGGTATAGTAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCTCTTCCTACGCTGGCCATGTTGAGTCCGATGCCTCGTTTTTTAAGATCATTCTAAATTCCCACTCGCCCGATTCAACAAAGTTGAATATTCCACTGAAATT
TGCAAGAGAACACGAAGAGATTTTCCATACCCAAGAGATGCGTCTTAAAGTTAAGGGAGGAGTTGAATGGAAAGTGGCATTAGAAAAAATTAATGGAAGAATATTATTTT
CTAAAGGATGGGAAGAAATTTCTAAATATTACTCTCTTGCATTTGCTCACTTGTTAGTTTTTCGATACGAAGGGAATTTTTGCTTTAATGTTGCCATATATGAAAAAAGT
TGTTCTGAAATTATATATCCAAAACCCGCACGAGGAGACCGTGAAGAAGATCATTGTGACAAAGATGATGAATATTGGTTTGAAAATGAATATGAAGATGAAGAAATGAT
GGAAGATGAAAAGAGATATAGGAGAAAAGATAAAATTATTCAAACTTTACCTTCGAAGCCGGCGGGTAAAACTAAGAGTAAAGGTATAGTAAAATAA
Protein sequenceShow/hide protein sequence
MASSSYAGHVESDASFFKIILNSHSPDSTKLNIPLKFAREHEEIFHTQEMRLKVKGGVEWKVALEKINGRILFSKGWEEISKYYSLAFAHLLVFRYEGNFCFNVAIYEKS
CSEIIYPKPARGDREEDHCDKDDEYWFENEYEDEEMMEDEKRYRRKDKIIQTLPSKPAGKTKSKGIVK