; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0003254 (gene) of Chayote v1 genome

Gene IDSed0003254
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG08:6693432..6693824
RNA-Seq ExpressionSed0003254
SyntenySed0003254
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5463231.1 hypothetical protein F2P56_019161 [Juglans regia]1.4e-2861.86Show/hide
Query:  SSVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVLGNVHG
        +S++++ EKFDGR+NFGLWQVQVKDVLIQSGL+KALKGRP    +   S D   T+ +        +S MSDE+WE++DLRA SAIRL  AKNVL N+HG
Subjt:  SSVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVLGNVHG

Query:  ISTAKELWEKLEAMYQAK
        ISTAK+LWEKLE +YQ K
Subjt:  ISTAKELWEKLEAMYQAK

KAF5765959.1 putative RNA-directed DNA polymerase [Helianthus annuus]4.8e-2961.86Show/hide
Query:  SSVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVLGNVHG
        S ++FD EK+DGR+NFGLWQVQVKDVLIQSGL+KAL+G+P+   S++SSG                 S   DEEWE++DLRA SAIRL  AKNVL NVHG
Subjt:  SSVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVLGNVHG

Query:  ISTAKELWEKLEAMYQAK
        ISTAK+LWEKLE +YQ K
Subjt:  ISTAKELWEKLEAMYQAK

KAF7802225.1 cytochrome p450 [Senna tora]1.8e-3163.41Show/hide
Query:  MASFMSSVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVL
        M+ F S+VKFD EKFDGR+NFGLWQVQVKDVLIQSGL+KAL+G+ S  DSE S                  +S+MSD +WEE+DLRA S IRL+ AKNVL
Subjt:  MASFMSSVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVL

Query:  GNVHGISTAKELWEKLEAMYQAK
         NV GISTAKELW+KLE +YQAK
Subjt:  GNVHGISTAKELWEKLEAMYQAK

KAF7810708.1 cytochrome p450 [Senna tora]7.4e-3061.79Show/hide
Query:  MASFMSSVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVL
        M+ F S++KFD EKFDGR+NFG WQVQVKDVLIQSGL KAL+G+ S  DSE S                  +S+MSD +WEE+DLRA S IRL  AKNVL
Subjt:  MASFMSSVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVL

Query:  GNVHGISTAKELWEKLEAMYQAK
         NV GISTAKELW+KLE +YQAK
Subjt:  GNVHGISTAKELWEKLEAMYQAK

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]2.7e-4076.42Show/hide
Query:  MASFMSSVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVL
        M+ FMS VK D EKFDG +NFGLWQVQVKDVLIQS L+KALKGRPS G SE  S DGG  ESSGGSS+G KKS+MS E+WEEMDLRA SAIR + AKN+L
Subjt:  MASFMSSVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVL

Query:  GNVHGISTAKELWEKLEAMYQAK
         NVH ISTAKELWEKLEA+YQAK
Subjt:  GNVHGISTAKELWEKLEAMYQAK

TrEMBL top hitse value%identityAlignment
A0A2G2YJH4 Uncharacterized protein6.3e-2758.68Show/hide
Query:  FMSSVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVLGNV
        +M   KF+ EKFDGR+NFGLWQVQVKDVLIQSGL+KALK RP+ G  +  S    S+E S       +KS +SDEEWEE+D++  S IRL  AK VL NV
Subjt:  FMSSVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVLGNV

Query:  HGISTAKELWEKLEAMYQAKA
         G+ST K+LWEKLE +YQ K+
Subjt:  HGISTAKELWEKLEAMYQAKA

A0A2G3AMB5 Uncharacterized protein2.8e-2761.48Show/hide
Query:  KFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVLGNVHGIST
        KF+ EKFDGR+NF LWQVQVKDVLIQSGL KALK RP+     +  GD  S +S   SSK  +K  +SDEEWEE+D++A S IRL  AKNVL NV G+ST
Subjt:  KFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVLGNVHGIST

Query:  AKELWEKLEAMYQAKAFQIGCT
         KELWEKLE +YQ K+ +  CT
Subjt:  AKELWEKLEAMYQAKAFQIGCT

A0A6A3BK59 CCHC-type domain-containing protein4.8e-2761.86Show/hide
Query:  SVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVLGNVHGI
        S +FD EKFDGR+NFGLWQVQVKD+LIQSGL KALKG+P+      S  +G   +    SS    KS MS+EEWEE+D+RA S IRL  AKNVL NV   
Subjt:  SVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVLGNVHGI

Query:  STAKELWEKLEAMYQAKA
        S+ KELWEKLE MYQAK+
Subjt:  STAKELWEKLEAMYQAKA

A0A6A3CWI3 CCHC-type domain-containing protein4.8e-2761.86Show/hide
Query:  SVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVLGNVHGI
        S +FD EKFDGR+NFGLWQVQVKD+LIQSGL KALKG+P+      S  +G   +    SS    KS MS+EEWEE+D+RA S IRL  AKNVL NV   
Subjt:  SVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVLGNVHGI

Query:  STAKELWEKLEAMYQAKA
        S+ KELWEKLE MYQAK+
Subjt:  STAKELWEKLEAMYQAKA

A0A6J1CG82 uncharacterized protein LOC1110105211.3e-4076.42Show/hide
Query:  MASFMSSVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVL
        M+ FMS VK D EKFDG +NFGLWQVQVKDVLIQS L+KALKGRPS G SE  S DGG  ESSGGSS+G KKS+MS E+WEEMDLRA SAIR + AKN+L
Subjt:  MASFMSSVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVL

Query:  GNVHGISTAKELWEKLEAMYQAK
         NVH ISTAKELWEKLEA+YQAK
Subjt:  GNVHGISTAKELWEKLEAMYQAK

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-949.5e-1233.61Show/hide
Query:  MSSVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVLGNVH
        MS VK++  KF+G   F  WQ +++D+LIQ GL+K L       D ++                  K   M  E+W ++D RA SAIRL+ + +V+ N+ 
Subjt:  MSSVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVLGNVH

Query:  GISTAKELWEKLEAMYQAK
           TA+ +W +LE++Y +K
Subjt:  GISTAKELWEKLEAMYQAK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGATGGGGAGAAATTTGATGGAAGGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGCTAATACAATCTGGATT
AAACAAGGCTTTGAAGGGAAGACCAAGTGGTGGTGATTCTGAAAACTCAAGCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGCAAAGGTTTTAAGAAGTCCA
ACATGAGTGATGAAGAATGGGAAGAAATGGATTTGAGGGCTACAAGTGCCATCAGGTTAAATTTTGCTAAAAATGTTCTTGGTAATGTGCATGGAATATCAACAGCCAAA
GAGCTTTGGGAGAAGCTTGAAGCGATGTATCAGGCAAAGGCATTTCAAATCGGTTGTACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGATGGGGAGAAATTTGATGGAAGGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGCTAATACAATCTGGATT
AAACAAGGCTTTGAAGGGAAGACCAAGTGGTGGTGATTCTGAAAACTCAAGCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGCAAAGGTTTTAAGAAGTCCA
ACATGAGTGATGAAGAATGGGAAGAAATGGATTTGAGGGCTACAAGTGCCATCAGGTTAAATTTTGCTAAAAATGTTCTTGGTAATGTGCATGGAATATCAACAGCCAAA
GAGCTTTGGGAGAAGCTTGAAGCGATGTATCAGGCAAAGGCATTTCAAATCGGTTGTACCTGA
Protein sequenceShow/hide protein sequence
MASFMSSVKFDGEKFDGRMNFGLWQVQVKDVLIQSGLNKALKGRPSGGDSENSSGDGGSTESSGGSSKGFKKSNMSDEEWEEMDLRATSAIRLNFAKNVLGNVHGISTAK
ELWEKLEAMYQAKAFQIGCT