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Sed0003349 (gene) of Chayote v1 genome

Gene IDSed0003349
OrganismSechium edule (Chayote v1)
DescriptionGag-protease polyprotein
Genome locationLG03:27423613..27428278
RNA-Seq ExpressionSed0003349
SyntenySed0003349
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037291.1 pol protein [Cucumis melo var. makuwa]4.8e-0842Show/hide
Query:  EGRDNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFE--AADRPQWN
        E  D TV +Y+  F  L+++AP+++ TE  R D FV GLR DI+G V+A  P  +A +L +A  +  Q  AN    +G   T GQKRK E      PQWN
Subjt:  EGRDNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFE--AADRPQWN
KAA0047216.1 gag protease polyprotein [Cucumis melo var. makuwa]4.8e-0841.05Show/hide
Query:  EGRDNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFEAADRP
        E  D TV +Y+  F  L+++AP+++ TE  R+D FV GLR DI+G V+A  P  +A +L +A  +  Q  AN    +G   T+GQKRK E    P
Subjt:  EGRDNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFEAADRP
KAA0062124.1 gag protease polyprotein [Cucumis melo var. makuwa]4.8e-0842Show/hide
Query:  EGRDNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFE--AADRPQWN
        E  D TV +Y+  F  L+++AP+++ TE  R D FV GLR DI+G V+A  P  +A +L +A  +  Q  AN    +G   T GQKRK E      PQWN
Subjt:  EGRDNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFE--AADRPQWN
KAA0067479.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.2e-0841Show/hide
Query:  EGRDNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFE--AADRPQWN
        E  D TV +Y++ F  L+++AP+++ TE  R D FV GLR DI+G V+A  P  +A +L +   +  Q  AN    +G   T GQKRK E      PQWN
Subjt:  EGRDNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFE--AADRPQWN
TYK30729.1 gag-protease polyprotein [Cucumis melo var. makuwa]9.7e-0943.3Show/hide
Query:  DNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFE--AADRPQWN
        D TV +Y+M F  L+ + PK++ TE  R D FV GLR DI+G V+A  P  Y  +L +A  +  Q  AN    +G   T GQKRK E      PQWN
Subjt:  DNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFE--AADRPQWN
TrEMBL top hitse value%identityAlignment
A0A5A7T6R9 Reverse transcriptase2.3e-0842Show/hide
Query:  EGRDNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFE--AADRPQWN
        E  D TV +Y+  F  L+++AP+++ TE  R D FV GLR DI+G V+A  P  +A +L +A  +  Q  AN    +G   T GQKRK E      PQWN
Subjt:  EGRDNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFE--AADRPQWN
A0A5A7TZ20 Gag protease polyprotein2.3e-0841.05Show/hide
Query:  EGRDNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFEAADRP
        E  D TV +Y+  F  L+++AP+++ TE  R+D FV GLR DI+G V+A  P  +A +L +A  +  Q  AN    +G   T+GQKRK E    P
Subjt:  EGRDNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFEAADRP
A0A5A7V492 Reverse transcriptase2.3e-0842Show/hide
Query:  EGRDNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFE--AADRPQWN
        E  D TV +Y+  F  L+++AP+++ TE  R D FV GLR DI+G V+A  P  +A +L +A  +  Q  AN    +G   T GQKRK E      PQWN
Subjt:  EGRDNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFE--AADRPQWN
A0A5A7VQP7 Reverse transcriptase4.0e-0841Show/hide
Query:  EGRDNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFE--AADRPQWN
        E  D TV +Y++ F  L+++AP+++ TE  R D FV GLR DI+G V+A  P  +A +L +   +  Q  AN    +G   T GQKRK E      PQWN
Subjt:  EGRDNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFE--AADRPQWN
A0A5D3E4I7 Gag-protease polyprotein4.7e-0943.3Show/hide
Query:  DNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFE--AADRPQWN
        D TV +Y+M F  L+ + PK++ TE  R D FV GLR DI+G V+A  P  Y  +L +A  +  Q  AN    +G   T GQKRK E      PQWN
Subjt:  DNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLREDIRGGVKAHYPKEYA-SLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFE--AADRPQWN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGTAGGGCTTCAAACTCCTGCACAAGGAGATTCAAGTGCAAATGATGTAGGGGGAGCTATGATCACTCAGATGATGACAACATTTCAGACCATGATAGAGAATCT
AATTGAAGCTCGTGTCACCCCACCTGCACCAGCAGTACCACCGGTTGTTTCACCTCTACCAGTAGTACCATCAACTGTTCTGCCTGCACGAACAACAGAAGGAAGGGATA
ACACAGTAGCTGAATATGAGATGAACTTTACAAGATTAGCTAAGTATGCCCCTAAACTGGTGGACACCGAAAAAAAGAGGATTGACTATTTTGTATTGGGATTGAGAGAA
GATATAAGAGGTGGTGTTAAGGCTCACTATCCAAAAGAATATGCTTCCCTAGAGATAGCAGAGTTCATAGAGGAGCAGAATGAGGCTAATCGAAAGGGATTTTCTGGTTC
ACTGTTTACTATTGGACAGAAGAGGAAGTTTGAAGCAGCAGATCGTCCTCAATGGAATAATGGCCAGTCAAGTCAGGAGGATTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAGTAGGGCTTCAAACTCCTGCACAAGGAGATTCAAGTGCAAATGATGTAGGGGGAGCTATGATCACTCAGATGATGACAACATTTCAGACCATGATAGAGAATCT
AATTGAAGCTCGTGTCACCCCACCTGCACCAGCAGTACCACCGGTTGTTTCACCTCTACCAGTAGTACCATCAACTGTTCTGCCTGCACGAACAACAGAAGGAAGGGATA
ACACAGTAGCTGAATATGAGATGAACTTTACAAGATTAGCTAAGTATGCCCCTAAACTGGTGGACACCGAAAAAAAGAGGATTGACTATTTTGTATTGGGATTGAGAGAA
GATATAAGAGGTGGTGTTAAGGCTCACTATCCAAAAGAATATGCTTCCCTAGAGATAGCAGAGTTCATAGAGGAGCAGAATGAGGCTAATCGAAAGGGATTTTCTGGTTC
ACTGTTTACTATTGGACAGAAGAGGAAGTTTGAAGCAGCAGATCGTCCTCAATGGAATAATGGCCAGTCAAGTCAGGAGGATTATTAG
Protein sequenceShow/hide protein sequence
MPVGLQTPAQGDSSANDVGGAMITQMMTTFQTMIENLIEARVTPPAPAVPPVVSPLPVVPSTVLPARTTEGRDNTVAEYEMNFTRLAKYAPKLVDTEKKRIDYFVLGLRE
DIRGGVKAHYPKEYASLEIAEFIEEQNEANRKGFSGSLFTIGQKRKFEAADRPQWNNGQSSQEDY