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Sed0003373 (gene) of Chayote v1 genome

Gene IDSed0003373
OrganismSechium edule (Chayote v1)
DescriptionConserved peptide upstream open reading frame 37
Genome locationLG13:2448334..2448651
RNA-Seq ExpressionSed0003373
SyntenySed0003373
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576874.1 Transcription factor basic helix-loop-helix 143, partial [Cucurbita argyrosperma subsp. sororia]7.0e-1994.12Show/hide
Query:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKP
        MVCQAATQTRFR LKHENGIAGKPTIIVR+IACFQ LQNCQAEYFRQLLKP
Subjt:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKP

KAG6600237.1 hypothetical protein SDJN03_05470, partial [Cucurbita argyrosperma subsp. sororia]7.0e-1994.12Show/hide
Query:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKP
        MVCQAATQTRFRTLKHENGIAGKPTIIVR+IACFQ LQNCQAEYFR LLKP
Subjt:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKP

KAG7014898.1 hypothetical protein SDJN02_22529 [Cucurbita argyrosperma subsp. argyrosperma]4.8e-2094.34Show/hide
Query:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT
        MVCQAATQTRFR LKHENGIAGKPTIIVR+IACFQ LQNCQAEYFRQLLKPVT
Subjt:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT

KAG7030896.1 hypothetical protein SDJN02_04933, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-2094.34Show/hide
Query:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT
        MVCQAATQTRFRTLKHENGIAGKPTIIVR+IACFQ LQNCQAEYFR LLKPVT
Subjt:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT

XP_016902954.1 PREDICTED: uncharacterized protein LOC103501164 isoform X2 [Cucumis melo]1.8e-1992.45Show/hide
Query:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT
        MVCQAATQTRFR LKHENGIAGKPTIIVR+IACFQ LQ+CQAEYFRQLLKPVT
Subjt:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT

TrEMBL top hitse value%identityAlignment
A0A0A0K458 Uncharacterized protein5.8e-1988.68Show/hide
Query:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT
        MVCQAA+QTRFR LKHENGIAGKPTIIV++IACFQ LQNCQAEYFR LLKPVT
Subjt:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT

A0A0A0KVT2 Uncharacterized protein6.8e-2092.45Show/hide
Query:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT
        MVCQAATQTRFR LKHENGIAGKPTIIVR+IACFQ LQNCQA+YFRQLLKPVT
Subjt:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT

A0A1S4E0J3 uncharacterized protein LOC103495379 isoform X25.8e-1988.68Show/hide
Query:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT
        MVCQAA+QTRFR LKHENGIAGKPTIIV++IACFQ LQNCQAEYFR LLKPVT
Subjt:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT

A0A1S4E402 uncharacterized protein LOC103501164 isoform X28.9e-2092.45Show/hide
Query:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT
        MVCQAATQTRFR LKHENGIAGKPTIIVR+IACFQ LQ+CQAEYFRQLLKPVT
Subjt:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT

W9R7U4 Uncharacterized protein9.8e-1988.68Show/hide
Query:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT
        MVCQAA+QTRFR LKHENGIAGKPTIIVR+IACFQ LQ+CQAEYFR LLKPVT
Subjt:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G29951.1 conserved peptide upstream open reading frame 356.8e-0478.26Show/hide
Query:  IACFQHLQNCQAEYFRQLLKPVT
        IA +Q +Q CQAEYFRQLLKPVT
Subjt:  IACFQHLQNCQAEYFRQLLKPVT

AT5G09461.1 conserved peptide upstream open reading frame 437.7e-1668.52Show/hide
Query:  MVCQAATQTRFRTLKHE-NGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT
        MV Q+A QTRFRT K+E NG + +PTI+VR+IACFQ + NCQAEYFR +LKPVT
Subjt:  MVCQAATQTRFRTLKHE-NGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT

AT5G50011.1 conserved peptide upstream open reading frame 373.7e-1879.25Show/hide
Query:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT
        MVCQ+A QTRFRTLKHE+GI G   I+VR+IACFQ LQ+CQAEYFRQLLKPVT
Subjt:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT

AT5G64341.1 conserved peptide upstream open reading frame 401.1e-1464.15Show/hide
Query:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT
        MVCQ+  +TRFR LK+E G A + TI+VR+I C+Q + NCQAEYFR LLKPVT
Subjt:  MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGACATTGAAACACGAAAATGGAATTGCAGGAAAACCAACAATTATAGTTAGATTGATCGCATGCTTTCAACATTT
GCAGAATTGTCAGGCTGAGTATTTTCGACAATTGCTTAAGCCTGTCACGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGACATTGAAACACGAAAATGGAATTGCAGGAAAACCAACAATTATAGTTAGATTGATCGCATGCTTTCAACATTT
GCAGAATTGTCAGGCTGAGTATTTTCGACAATTGCTTAAGCCTGTCACGTAG
Protein sequenceShow/hide protein sequence
MVCQAATQTRFRTLKHENGIAGKPTIIVRLIACFQHLQNCQAEYFRQLLKPVT