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Sed0003377 (gene) of Chayote v1 genome

Gene IDSed0003377
OrganismSechium edule (Chayote v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S rib s in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Genome locationLG11:36018800..36019249
RNA-Seq ExpressionSed0003377
SyntenySed0003377
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602699.1 hypothetical protein SDJN03_07932, partial [Cucurbita argyrosperma subsp. sororia]8.7e-5981.13Show/hide
Query:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPFQDT-------DDDDDNENMI---SVKEVRARRKLKDLFVSSPPLEH
        M TLHKFKLLASQCAV GS TRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFP+QDT       DDDDD+ENMI   + KEVRARRKLKDLFVSSPPLE 
Subjt:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPFQDT-------DDDDDNENMI---SVKEVRARRKLKDLFVSSPPLEH

Query:  KVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE
        KVSD +IEE+EGL TA N SA G GTTS+TRR LRPI+ TFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE

XP_022960038.1 uncharacterized protein LOC111460905 [Cucurbita moschata]6.7e-5981.13Show/hide
Query:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPFQDT-------DDDDDNENMI---SVKEVRARRKLKDLFVSSPPLEH
        M TLHKFKLLASQCAV GS TRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFP+QDT       DDDDD+ENMI   + KEV+ARRKLKDLFVSSPPLE 
Subjt:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPFQDT-------DDDDDNENMI---SVKEVRARRKLKDLFVSSPPLEH

Query:  KVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE
        KVSDR+IEE+EGL TA N SA G GTTS+TRR LRPI+ TFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE

XP_022990769.1 uncharacterized protein LOC111487551 [Cucurbita maxima]1.1e-5881.13Show/hide
Query:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPF-------QDTDDDDDNENMI---SVKEVRARRKLKDLFVSSPPLEH
        M TLHKFKLLASQCAV GS TRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFP+       QD DDDDD+ENMI   + KEVRARRKLKDLFVSSPPLE 
Subjt:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPF-------QDTDDDDDNENMI---SVKEVRARRKLKDLFVSSPPLEH

Query:  KVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE
         VSDR+IEE+EGL TA NTSA G GTTS+TRR LRPI+ TFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE

XP_023546418.1 uncharacterized protein LOC111805523 [Cucurbita pepo subsp. pepo]2.3e-5981.76Show/hide
Query:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPFQDT-------DDDDDNENMI---SVKEVRARRKLKDLFVSSPPLEH
        M TLHKFKLLASQCAV GS TRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFP+QDT       DDDDD+ENMI   + KEVRARRKLKDLFVSSPPLE 
Subjt:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPFQDT-------DDDDDNENMI---SVKEVRARRKLKDLFVSSPPLEH

Query:  KVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE
        KVSDR+IEE+EGL TA N SA G GTTS+TRR LRPI+ TFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE

XP_038885993.1 uncharacterized protein LOC120076298 [Benincasa hispida]1.3e-5780Show/hide
Query:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPFQDT--------DDDDDNENMI---SVKEVRARRKLKDLFVSSPPLE
        M TLHKFKLLASQCAVAGS TRSP ASPVIHLRRRRRKTLRMLLNRTDRRRFP+QD         DDDDD++ MI   + KEVRARRKLKDLFVSSPPLE
Subjt:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPFQDT--------DDDDDNENMI---SVKEVRARRKLKDLFVSSPPLE

Query:  HKVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE
         KVSDR+IEEEEG  TAANTSA G G+ S+TRR LRPI+ATFRYRFLRRAWRPVLVAIPE
Subjt:  HKVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE

TrEMBL top hitse value%identityAlignment
A0A6J1BYN1 uncharacterized protein LOC1110064615.7e-5678.62Show/hide
Query:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPF-------QDTDDDDDNENMI---SVKEVRARRKLKDLFVSSPPLEH
        M TLHKFKLLASQC VAGS TRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFP+       QD DD++D+ENMI   + KEVRARRKLKDLFVSSPP + 
Subjt:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPF-------QDTDDDDDNENMI---SVKEVRARRKLKDLFVSSPPLEH

Query:  KVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE
        KVSDR+IEE+EGL TA+NTSA G G TS+TRR LRPI++TFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE

A0A6J1FG66 uncharacterized protein LOC1114451195.7e-5677.5Show/hide
Query:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPFQDT--------DDDDDNENMI---SVKEVRARRKLKDLFVSSPPLE
        M TLHKFKLLASQCAVAG  T+SPTASPV HLRRRRRKTLRMLLNR DRRRFP+QD         DDDDD++NMI   + KEVRARRKLKDLFVSSPPLE
Subjt:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPFQDT--------DDDDDNENMI---SVKEVRARRKLKDLFVSSPPLE

Query:  HKVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE
         KVSDR+IEE+E L T ANTSA G GT S TRR LRPI+ATFRYRFLRRAWRPVLV IPE
Subjt:  HKVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE

A0A6J1H7N8 uncharacterized protein LOC1114609053.2e-5981.13Show/hide
Query:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPFQDT-------DDDDDNENMI---SVKEVRARRKLKDLFVSSPPLEH
        M TLHKFKLLASQCAV GS TRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFP+QDT       DDDDD+ENMI   + KEV+ARRKLKDLFVSSPPLE 
Subjt:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPFQDT-------DDDDDNENMI---SVKEVRARRKLKDLFVSSPPLEH

Query:  KVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE
        KVSDR+IEE+EGL TA N SA G GTTS+TRR LRPI+ TFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE

A0A6J1JSX9 uncharacterized protein LOC1114875515.5e-5981.13Show/hide
Query:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPF-------QDTDDDDDNENMI---SVKEVRARRKLKDLFVSSPPLEH
        M TLHKFKLLASQCAV GS TRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFP+       QD DDDDD+ENMI   + KEVRARRKLKDLFVSSPPLE 
Subjt:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPF-------QDTDDDDDNENMI---SVKEVRARRKLKDLFVSSPPLEH

Query:  KVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE
         VSDR+IEE+EGL TA NTSA G GTTS+TRR LRPI+ TFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE

A0A6J1JYC4 uncharacterized protein LOC1114894141.5e-5678.12Show/hide
Query:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPFQDT--------DDDDDNENMI---SVKEVRARRKLKDLFVSSPPLE
        M TLHKFKLLASQCAVAG  T+SPTASPV HLRRRRRKTLRMLLNRTDRRRFP+QD         DDDDD++NMI   + KEVRARRKLKDLFVSSPPLE
Subjt:  MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPFQDT--------DDDDDNENMI---SVKEVRARRKLKDLFVSSPPLE

Query:  HKVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE
         KVSDR+IEE+E L T ANTSA G GT S TRR LRPI+ATFRYRFLRRAWRPVLV IPE
Subjt:  HKVSDRQIEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G66890.1 FUNCTIONS IN: molecular_function unknown8.5e-2042.94Show/hide
Query:  VTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNR-TDRRRFPFQDTDDDDDNENMISVKEVRARRKLKDLFVSSPPLEH--------KV
        ++L KFKLLA+ C+   +   SPT SPVIHL  RRRKTLR+LL R +DR R P +  ++ D+++      ++R+ RKL DLFVSSPP E         K 
Subjt:  VTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNR-TDRRRFPFQDTDDDDDNENMISVKEVRARRKLKDLFVSSPPLEH--------KV

Query:  SDRQIEEEEGLFTAANTSAVGFGTTSSTRRF-----LRPITA-TFRYRFLRRAWRPVLVAIPE
        +  ++E E  +     ++  GFG   + RR      +RP+++ T R R LRR+WRPVLV IPE
Subjt:  SDRQIEEEEGLFTAANTSAVGFGTTSSTRRF-----LRPITA-TFRYRFLRRAWRPVLVAIPE

AT1G68430.1 unknown protein9.7e-0837.58Show/hide
Query:  MVTLHKFKLLASQCAVAG-SATRSPT--ASPVIHLRRRRRKTLRMLLNRTDRRRFPFQDTDDDDDNENMISVKEVRARRKLKDLFVSSPPLEHKVSDRQ-
        M TL +FK L +QC VA  S TRSP+   SP++ L RR++ TL+MLL+     R   Q              K+V A RKLKDLFVSS   E +  + + 
Subjt:  MVTLHKFKLLASQCAVAG-SATRSPT--ASPVIHLRRRRRKTLRMLLNRTDRRRFPFQDTDDDDDNENMISVKEVRARRKLKDLFVSSPPLEHKVSDRQ-

Query:  ----IEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE
             +EE     AA  +A       S      P+   F  R L+RAWRP L  I E
Subjt:  ----IEEEEGLFTAANTSAVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE

AT5G16200.1 50S ribosomal protein-related1.3e-1539.62Show/hide
Query:  LHKFKLLAS----QCAVAGSATRSPTASPVIHLRRRRRKTLRMLLN------RTDRRRFPFQDTDDDDDNENMISVKEVRARRKLKDLFVS--SPPLEHK
        LHKFKL A+    + + AGS T SPT SPV +L  RRRKTLRML +      R + R+   +  + D ++ N         RRKL++L V+  SPP + +
Subjt:  LHKFKLLAS----QCAVAGSATRSPTASPVIHLRRRRRKTLRMLLN------RTDRRRFPFQDTDDDDDNENMISVKEVRARRKLKDLFVS--SPPLEHK

Query:  VSDRQIEEEEGLFTAANTSAVGFGTTSSTRRF-LRPITATFRYRFLRRAWRPVLVAIPE
             I EE    +  N ++ G G   + RRF       +FR R LR+ WRPVLV+IPE
Subjt:  VSDRQIEEEEGLFTAANTSAVGFGTTSSTRRF-LRPITATFRYRFLRRAWRPVLVAIPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTACCTTGCATAAATTCAAGCTGTTAGCCTCCCAATGTGCCGTCGCCGGCAGCGCTACCAGGAGCCCCACCGCTAGCCCCGTCATTCACCTCCGCCGCCGCCGACG
CAAAACCCTAAGAATGCTCCTCAATCGCACCGATCGACGCCGATTTCCTTTTCAAGATACCGACGACGATGACGACAATGAGAATATGATTTCGGTGAAGGAGGTTCGAG
CCAGACGGAAACTCAAGGATTTGTTCGTCTCGTCGCCGCCGCTTGAGCATAAGGTTTCCGATAGGCAAATTGAAGAAGAGGAGGGATTGTTTACGGCGGCTAACACCAGC
GCCGTCGGATTCGGTACGACCTCCTCCACTCGCCGGTTTCTAAGGCCGATAACGGCGACATTTCGATACAGATTCCTCCGGCGAGCTTGGCGGCCGGTGCTCGTCGCCAT
TCCCGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTACCTTGCATAAATTCAAGCTGTTAGCCTCCCAATGTGCCGTCGCCGGCAGCGCTACCAGGAGCCCCACCGCTAGCCCCGTCATTCACCTCCGCCGCCGCCGACG
CAAAACCCTAAGAATGCTCCTCAATCGCACCGATCGACGCCGATTTCCTTTTCAAGATACCGACGACGATGACGACAATGAGAATATGATTTCGGTGAAGGAGGTTCGAG
CCAGACGGAAACTCAAGGATTTGTTCGTCTCGTCGCCGCCGCTTGAGCATAAGGTTTCCGATAGGCAAATTGAAGAAGAGGAGGGATTGTTTACGGCGGCTAACACCAGC
GCCGTCGGATTCGGTACGACCTCCTCCACTCGCCGGTTTCTAAGGCCGATAACGGCGACATTTCGATACAGATTCCTCCGGCGAGCTTGGCGGCCGGTGCTCGTCGCCAT
TCCCGAGTAG
Protein sequenceShow/hide protein sequence
MVTLHKFKLLASQCAVAGSATRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPFQDTDDDDDNENMISVKEVRARRKLKDLFVSSPPLEHKVSDRQIEEEEGLFTAANTS
AVGFGTTSSTRRFLRPITATFRYRFLRRAWRPVLVAIPE