CuGenDBv2

Gene ID	Sed0003399
Organism	Sechium edule (Chayote v1)
Description	binding partner of ACD11 1-like
Genome location	LG04:41196410..41198511
RNA-Seq Expression	Sed0003399
Synteny	Sed0003399
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004142266.1 binding partner of ACD11 1 [Cucumis sativus]

1.0e-113

84.17

Show/hide

Query:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSIL---ENCYGDC
        MSMRTVKVSNISK TSERDIKEFFSFSGEILYVE+QRE+ENTQVAYVTYKDSQGADTAILLTGAKIG+L VTITLVENYHLPPEA  SIL   +   G  
Subjt:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSIL---ENCYGDC

Query:  SKSGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMS
               VS+MLAKGFILGKDALNKAKAFDE+LQLTSNASATVAS      ITEKITAGTAVVNEKVREMDEMFQV EKTKSALAVAEQKA++AGTALMS
Subjt:  SKSGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMS

Query:  NYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR
        NY+VLTGAAWFSNAVTAVTKAAEEVTQMTK K EK +EEKKE++YRERTGII+NF ELHLD PLPGEPAIVPVNSADR
Subjt:  NYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR

XP_022990263.1 binding partner of ACD11 1-like [Cucurbita maxima]

3.4e-114

83.81

Show/hide

Query:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILE---NCYGDC
        MSMRTVKVSNISKATSERDIKEF SFSG+ILYVE+QRETENTQVAYVTY+DSQGADTAILLTGAKIG+L+V+ITLVENYHLPPEA  SIL+      G  
Subjt:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILE---NCYGDC

Query:  SKSGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMS
               VS+MLAKGFILGKDALNKAKAFDE+LQLTSNASATVAS      ITEKITAGTAVVNEKVREMDEMFQV+EKTKSALAVAEQKASNAGTALMS
Subjt:  SKSGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMS

Query:  NYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR
        NY+VLTGAAWFSNAVTAVTKAAEEVTQMTKAK EK +EEK+E++Y ERTGIINNF E HLD PLPGEPAIVPVNSADR
Subjt:  NYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR

XP_023537354.1 binding partner of ACD11 1-like isoform X1 [Cucurbita pepo subsp. pepo]

1.2e-114

84.17

Show/hide

Query:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILE---NCYGDC
        MSMRTVKVSNISKATSERDIKEF SFSG+ILYVE+QRETENTQVAYVTY+DSQGADTAILLTGAKIG+L+V+ITLVENYHLPPEA  SIL+      G  
Subjt:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILE---NCYGDC

Query:  SKSGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMS
               VS+MLAKGFILGKDALNKAKAFDE+LQLTSNASATVAS      ITEKITAGTAVVNEKVREMDEMFQV+EKTKSALAVAEQKASNAGTALMS
Subjt:  SKSGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMS

Query:  NYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR
        NY+VLTGAAWFSNAVTAVTKAAEEVTQMTKAK EK DEEK+E++Y ERTGIINNF E HLD PLPGEPAIVPVNSADR
Subjt:  NYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR

XP_023537363.1 binding partner of ACD11 1-like isoform X2 [Cucurbita pepo subsp. pepo]

1.0e-113

84.06

Show/hide

Query:  MRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILE---NCYGDCSK
        MRTVKVSNISKATSERDIKEF SFSG+ILYVE+QRETENTQVAYVTY+DSQGADTAILLTGAKIG+L+V+ITLVENYHLPPEA  SIL+      G    
Subjt:  MRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILE---NCYGDCSK

Query:  SGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMSNY
             VS+MLAKGFILGKDALNKAKAFDE+LQLTSNASATVAS      ITEKITAGTAVVNEKVREMDEMFQV+EKTKSALAVAEQKASNAGTALMSNY
Subjt:  SGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMSNY

Query:  HVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR
        +VLTGAAWFSNAVTAVTKAAEEVTQMTKAK EK DEEK+E++Y ERTGIINNF E HLD PLPGEPAIVPVNSADR
Subjt:  HVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR

XP_038891484.1 binding partner of ACD11 1 [Benincasa hispida]

3.1e-115

84.89

Show/hide

Query:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSIL---ENCYGDC
        MSMRTVKVSNISK TSERDIKEFFSFSGEILYVE+QRETENTQVAYVTYKDSQGADTAILLTGAKIG+L VTITLVENYHLPPEA  SIL   +   G  
Subjt:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSIL---ENCYGDC

Query:  SKSGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMS
               VS+MLAKGFILGKDALNKAKAFDE+LQLTSNASATVAS      ITEKITAGTAVVNEKVREMDEMFQV+EKTKSALAVAEQKA++AGTALMS
Subjt:  SKSGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMS

Query:  NYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR
        NY+VLTGAAWFSNAVTAVTKAAEEVTQMTK K EK +EEKKE++YRERTGIINNF ELHLD PLPGEPAIVPVNSADR
Subjt:  NYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KIR7 RRM domain-containing protein

4.9e-114

84.17

Show/hide

Query:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSIL---ENCYGDC
        MSMRTVKVSNISK TSERDIKEFFSFSGEILYVE+QRE+ENTQVAYVTYKDSQGADTAILLTGAKIG+L VTITLVENYHLPPEA  SIL   +   G  
Subjt:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSIL---ENCYGDC

Query:  SKSGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMS
               VS+MLAKGFILGKDALNKAKAFDE+LQLTSNASATVAS      ITEKITAGTAVVNEKVREMDEMFQV EKTKSALAVAEQKA++AGTALMS
Subjt:  SKSGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMS

Query:  NYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR
        NY+VLTGAAWFSNAVTAVTKAAEEVTQMTK K EK +EEKKE++YRERTGII+NF ELHLD PLPGEPAIVPVNSADR
Subjt:  NYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR

A0A1S3BUX7 binding partner of ACD11 1-like isoform X1

8.3e-114

83.81

Show/hide

Query:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSIL---ENCYGDC
        MSMRTVKVSNISK TSERDIKEFFSFSGEILYVE+QRE+ENTQVAYVTYKDSQGADTAILLTGAKIG+L VTITLVENYHLPPEA  SIL   +   G  
Subjt:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSIL---ENCYGDC

Query:  SKSGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMS
               VS+MLAKGFILGKDALNKAKAFDE+LQ TSNASATVAS      ITEKITAGTAVVNEKVREMDEMFQV+EKTKSALAVAEQKA++AGTALMS
Subjt:  SKSGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMS

Query:  NYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR
        NY+VLTGAAWFSNAVTAVTKAAEEVTQMTK K EK +EEKKE++YRERTGII+NF ELHLD PLPGEPAIVPVNSADR
Subjt:  NYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR

A0A6J1FR87 binding partner of ACD11 1-like isoform X1

1.4e-113

83.45

Show/hide

Query:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILE---NCYGDC
        MSMRTVKVSNISKATSERDIKEF SFSG+ILYVE+QRETENTQVAYVTY+DSQGADTAILLTGAKIG+L+V+ITLVENYHLPPEA  SIL+         
Subjt:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILE---NCYGDC

Query:  SKSGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMS
               VS+MLAKGFILGKDALNKAKAFDE+LQLTSNASATVAS      ITEKITAGTAVVNEKVREMDEMFQV+EKTKSALAVAEQKASNAGTALMS
Subjt:  SKSGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMS

Query:  NYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR
        NY+VLTGAAWFSNAVTAVTKAAEEVTQMTKAK EK +EEK+E++Y ERTGIINNF E HLD PLPGEPAIVPVNSADR
Subjt:  NYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR

A0A6J1FSI4 binding partner of ACD11 1-like isoform X3

1.1e-113

83.81

Show/hide

Query:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSIL---ENCYGDC
        MSMRTVKVSNISKATSERDI+EFFSFSGEILYVE+QRETENTQVAYVTYKDSQGADTAILLTGAKIG+L VTI LVENYHLPPEA  SIL   +   G+ 
Subjt:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSIL---ENCYGDC

Query:  SKSGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMS
               VS+MLAKGFILGKDA+NKAKAFDE+ QLTSNASATV S      ITEKITAGTAVVNEKVREMDE FQVSEKTKSALAVAEQKAS+AGTALMS
Subjt:  SKSGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMS

Query:  NYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR
        NY+V TGAAWFSNAVTAVTKAAEEVTQMTKAK EK +EEKKE++YRERTGIINNF ELHLD PLPGEPAIVPVNSADR
Subjt:  NYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR

A0A6J1JSR7 binding partner of ACD11 1-like

1.7e-114

83.81

Show/hide

Query:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILE---NCYGDC
        MSMRTVKVSNISKATSERDIKEF SFSG+ILYVE+QRETENTQVAYVTY+DSQGADTAILLTGAKIG+L+V+ITLVENYHLPPEA  SIL+      G  
Subjt:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILE---NCYGDC

Query:  SKSGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMS
               VS+MLAKGFILGKDALNKAKAFDE+LQLTSNASATVAS      ITEKITAGTAVVNEKVREMDEMFQV+EKTKSALAVAEQKASNAGTALMS
Subjt:  SKSGRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMS

Query:  NYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR
        NY+VLTGAAWFSNAVTAVTKAAEEVTQMTKAK EK +EEK+E++Y ERTGIINNF E HLD PLPGEPAIVPVNSADR
Subjt:  NYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR

SwissProt top hits

e value

%identity

Alignment

P87216 Protein vip1

6.1e-05

27.5

Show/hide

Query:  VKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILENCYGDCS-----KS
        V V+NIS   +E+ I +FFSF G++  +  ++  E TQ A + ++      TA+LL  A +G   + IT  +       A  +      GD +     K 
Subjt:  VKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILENCYGDCS-----KS

Query:  GRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTS-------NASATVASITEKITAGTAVVNEKVREMDEMFQVSEK---TKSALAVAEQKA--SNAGTA
            +S +L++G+ L    L K+   D+   ++S       +A + V S+ E+       V EK  E+D  F +S+K   T S ++    KA  + AGT+
Subjt:  GRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTS-------NASATVASITEKITAGTAVVNEKVREMDEMFQVSEK---TKSALAVAEQKA--SNAGTA

Q9LFD5 Binding partner of ACD11 1

4.5e-48

45.67

Show/hide

Query:  MRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILENCYGDCSKSGR
        +R+VKV N+S   +E DIKEFFSFSGE+  +++Q    N   AYVT+K++QGA+TA+LL+GA I +  V I L  NY  P         +      +   
Subjt:  MRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILENCYGDCSKSGR

Query:  RRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMSNYHVL
          VSSMLAKGFILGKDA+ KAKAFDE+   TS A+A VAS      +++K+TAGT++VNEK++ +D+ FQV+E+TKS  A AEQ  S+AG+A+M N +VL
Subjt:  RRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMSNYHVL

Query:  TGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELH
        TG +W + A   V +AA EV Q TK   EKV+ E+     + +  +   ++ +H
Subjt:  TGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELH

Arabidopsis top hits

e value

%identity

Alignment

AT1G67950.1 RNA-binding (RRM/RBD/RNP motifs) family protein

6.4e-58

50.93

Show/hide

Query:  MRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILENCYGDCS-KSG
        ++TVK+SN+S   S++D+KEFFSFSG+I YVE++ ET+ +QVAYVT+KDSQGA+TA+LLTGA I +L V+IT   NY LPPEA     E+ +   S K  
Subjt:  MRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILENCYGDCS-KSG

Query:  RRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMSNYHV
           V+ M+ +G+ LGKDA+ KAKAFD++  L SNASAT+AS      ++EK++ GT VVNEK+R++DE +QV E TKSALA AE+ A +A TALM+N +V
Subjt:  RRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMSNYHV

Query:  LTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPV
         +GA+WFSNA  AVTKA                +EK EN    R  II       LD   P  PA+VPV
Subjt:  LTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPV

AT1G67950.2 RNA-binding (RRM/RBD/RNP motifs) family protein

6.4e-58

50.93

Show/hide

Query:  MRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILENCYGDCS-KSG
        ++TVK+SN+S   S++D+KEFFSFSG+I YVE++ ET+ +QVAYVT+KDSQGA+TA+LLTGA I +L V+IT   NY LPPEA     E+ +   S K  
Subjt:  MRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILENCYGDCS-KSG

Query:  RRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMSNYHV
           V+ M+ +G+ LGKDA+ KAKAFD++  L SNASAT+AS      ++EK++ GT VVNEK+R++DE +QV E TKSALA AE+ A +A TALM+N +V
Subjt:  RRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMSNYHV

Query:  LTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPV
         +GA+WFSNA  AVTKA                +EK EN    R  II       LD   P  PA+VPV
Subjt:  LTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPV

AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein

5.4e-57

50.74

Show/hide

Query:  MRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPE--ARPSILENCYGDCSKS
        ++TVK+SN+S   S++D+KEFFSFSG+I YVE++ ET+ +QVAYVT+KDSQGA+TA+LLTGA I +L V+IT   NY LPPE  A  S   +  G   K 
Subjt:  MRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPE--ARPSILENCYGDCSKS

Query:  GRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMSNYH
            V+ M+ +G+ LGKDA+ KAKAFD++  L SNASAT+AS      ++EK++ GT VVNEK+R++DE +QV E TKSALA AE+ A +A TALM+N +
Subjt:  GRRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMSNYH

Query:  VLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPV
        V +GA+WFSNA  AVTKA                +EK EN    R  II       LD   P  PA+VPV
Subjt:  VLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPV

AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein

6.2e-61

52.65

Show/hide

Query:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILENCYGDCSKS
        M+M TVKVSN+S   ++RD+KEFFSFSG+ILY+E Q ETE T++AYVT+KD QGA+TA+LL+GA I +  V +++  +Y L PEA  S+         K+
Subjt:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILENCYGDCSKS

Query:  G-------RRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGT
        G          VSSMLAKGFILGKDA+ KAK+ DE+ QLTS ASA VAS       T+KI  GT VV EKVRE+D+ +QVSEKTKSA+A AEQ  SNAG+
Subjt:  G-------RRRVSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGT

Query:  ALMSNYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHL
        A+M N +VLTGA W + A   V KAAEEV Q  K K    +EE K         +++ F  +HL
Subjt:  ALMSNYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAKGEKVDEEKKENMYRERTGIINNFTELHL

AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein

5.8e-59

53.36

Show/hide

Query:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILENCYGDCSKS
        MSM TVKVSN+S   +ERD+KEFFSFSG+I Y+E Q E + +++AYVT+KD QGA+TA+LLTG+ I +  VT+T+  +Y LPP+A  SI      + S S
Subjt:  MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILENCYGDCSKS

Query:  GRRR-----------VSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKAS
          R            VS M++KGF+LGKDA+ KAK+ DE+ QLTS ASA V S       TEKI  GT VV+EKV+E+D+ FQV+EKTKSA+A AEQ  S
Subjt:  GRRR-----------VSSMLAKGFILGKDALNKAKAFDEQLQLTSNASATVAS------ITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKAS

Query:  NAGTALMSNYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAK---GEKVDEEKKE
        NAG+A+M N +VLTGA W + A   V+KAAEEV Q  K K    E+ +EEKK+
Subjt:  NAGTALMSNYHVLTGAAWFSNAVTAVTKAAEEVTQMTKAK---GEKVDEEKKE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCGATGAGAACTGTCAAGGTCAGCAATATCTCTAAGGCAACTTCTGAGAGAGATATCAAAGAATTCTTTTCATTCTCTGGGGAAATCCTGTATGTTGAATTGCAAAG
AGAAACTGAAAATACTCAGGTTGCTTATGTTACATATAAGGATTCTCAAGGAGCAGACACTGCAATACTTTTGACAGGAGCAAAAATTGGTAATCTCTATGTTACAATTA
CACTGGTTGAGAATTATCATCTTCCACCTGAAGCAAGGCCATCAATCCTGGAAAACTGTTACGGGGATTGCTCCAAATCAGGCCGAAGACGCGTAAGTTCAATGCTTGCC
AAGGGCTTCATCTTGGGAAAGGATGCTCTCAACAAGGCTAAAGCGTTCGACGAACAACTCCAGTTGACATCGAATGCTTCTGCAACCGTTGCTTCCATAACCGAGAAGAT
AACTGCAGGCACAGCAGTAGTGAATGAAAAGGTCAGGGAGATGGATGAGATGTTCCAGGTTTCCGAAAAAACGAAATCAGCCCTTGCAGTTGCCGAGCAGAAGGCAAGCA
ATGCTGGAACTGCGCTCATGAGCAACTATCATGTGTTAACTGGAGCAGCATGGTTTTCAAATGCAGTAACTGCAGTTACCAAAGCTGCTGAGGAAGTGACCCAAATGACC
AAGGCAAAAGGCGAGAAAGTCGATGAGGAAAAAAAGGAGAACATGTATCGTGAAAGAACCGGGATCATCAATAACTTTACCGAGCTCCATCTCGACGTGCCGTTACCCGG
AGAGCCTGCTATTGTTCCAGTAAATTCAGCTGATAGATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSMRTVKVSNISKATSERDIKEFFSFSGEILYVELQRETENTQVAYVTYKDSQGADTAILLTGAKIGNLYVTITLVENYHLPPEARPSILENCYGDCSKSGRRRVSSMLA
KGFILGKDALNKAKAFDEQLQLTSNASATVASITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASNAGTALMSNYHVLTGAAWFSNAVTAVTKAAEEVTQMT
KAKGEKVDEEKKENMYRERTGIINNFTELHLDVPLPGEPAIVPVNSADR

Sed0003399 (gene) of Chayote v1 genome