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Sed0003400 (gene) of Chayote v1 genome

Gene IDSed0003400
OrganismSechium edule (Chayote v1)
DescriptionTHO complex subunit 2
Genome locationLG03:6686434..6687778
RNA-Seq ExpressionSed0003400
SyntenySed0003400
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006397 - mRNA processing (biological process)
GO:0006406 - mRNA export from nucleus (biological process)
GO:0000347 - THO complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046395.1 THO complex subunit 2 [Cucumis melo var. makuwa]2.0e-0881.08Show/hide
Query:  MQRAGYLDDPGLRIHGKEVLNRITRREADLYPLHNIS
        MQR GYLDDPGLRIHGKEV+N++TRREADLYPL++ S
Subjt:  MQRAGYLDDPGLRIHGKEVLNRITRREADLYPLHNIS
KAG6579185.1 THO complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia]1.9e-0690Show/hide
Query:  MQRAGYLDDPGLRIHGKEVLNRITRREADL
        MQRAGYLDDPGLRIHGKEV+N++TRREADL
Subjt:  MQRAGYLDDPGLRIHGKEVLNRITRREADL
TYK14666.1 THO complex subunit 2 [Cucumis melo var. makuwa]2.0e-0881.08Show/hide
Query:  MQRAGYLDDPGLRIHGKEVLNRITRREADLYPLHNIS
        MQR GYLDDPGLRIHGKEV+N++TRREADLYPL++ S
Subjt:  MQRAGYLDDPGLRIHGKEVLNRITRREADLYPLHNIS
XP_022938715.1 THO complex subunit 2-like isoform X2 [Cucurbita moschata]1.9e-0690Show/hide
Query:  MQRAGYLDDPGLRIHGKEVLNRITRREADL
        MQRAGYLDDPGLRIHGKEV+N++TRREADL
Subjt:  MQRAGYLDDPGLRIHGKEVLNRITRREADL
XP_023549536.1 THO complex subunit 2-like isoform X2 [Cucurbita pepo subsp. pepo]1.9e-0690Show/hide
Query:  MQRAGYLDDPGLRIHGKEVLNRITRREADL
        MQRAGYLDDPGLRIHGKEV+N++TRREADL
Subjt:  MQRAGYLDDPGLRIHGKEVLNRITRREADL
TrEMBL top hitse value%identityAlignment
A0A5A7TYD0 THO complex subunit 29.8e-0981.08Show/hide
Query:  MQRAGYLDDPGLRIHGKEVLNRITRREADLYPLHNIS
        MQR GYLDDPGLRIHGKEV+N++TRREADLYPL++ S
Subjt:  MQRAGYLDDPGLRIHGKEVLNRITRREADLYPLHNIS
A0A5D3CW70 THO complex subunit 29.8e-0981.08Show/hide
Query:  MQRAGYLDDPGLRIHGKEVLNRITRREADLYPLHNIS
        MQR GYLDDPGLRIHGKEV+N++TRREADLYPL++ S
Subjt:  MQRAGYLDDPGLRIHGKEVLNRITRREADLYPLHNIS
A0A6J1FEW8 THO complex subunit 29.2e-0790Show/hide
Query:  MQRAGYLDDPGLRIHGKEVLNRITRREADL
        MQRAGYLDDPGLRIHGKEV+N++TRREADL
Subjt:  MQRAGYLDDPGLRIHGKEVLNRITRREADL
A0A6J1JUH5 THO complex subunit 29.2e-0790Show/hide
Query:  MQRAGYLDDPGLRIHGKEVLNRITRREADL
        MQRAGYLDDPGLRIHGKEV+N++TRREADL
Subjt:  MQRAGYLDDPGLRIHGKEVLNRITRREADL
A0A6J1K3X2 THO complex subunit 29.2e-0790Show/hide
Query:  MQRAGYLDDPGLRIHGKEVLNRITRREADL
        MQRAGYLDDPGLRIHGKEV+N++TRREADL
Subjt:  MQRAGYLDDPGLRIHGKEVLNRITRREADL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCGTGCTGGTTACTTGGATGATCCAGGCTTGAGAATTCATGGTAAAGAAGTGCTCAACAGGATTACGAGACGTGAAGCTGATTTGTATCCTTTACATAACATCTC
CTTGCATCAAGCATGTAATCTTGGTGGGGAGAGGGAGAATAATCAAGTCAATCCCAAACAATCCAAGAAGAACCAATCAAAGATAAATAGATTGATGGTGAGGATGGGTC
AAAGAGGGGTGGAAAAGCTTGCCAAGAAGGAACAGGACAAAGGGCAAGAAAGAATTTGTGGACTAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGCGTGCTGGTTACTTGGATGATCCAGGCTTGAGAATTCATGGTAAAGAAGTGCTCAACAGGATTACGAGACGTGAAGCTGATTTGTATCCTTTACATAACATCTC
CTTGCATCAAGCATGTAATCTTGGTGGGGAGAGGGAGAATAATCAAGTCAATCCCAAACAATCCAAGAAGAACCAATCAAAGATAAATAGATTGATGGTGAGGATGGGTC
AAAGAGGGGTGGAAAAGCTTGCCAAGAAGGAACAGGACAAAGGGCAAGAAAGAATTTGTGGACTAGAATGA
Protein sequenceShow/hide protein sequence
MQRAGYLDDPGLRIHGKEVLNRITRREADLYPLHNISLHQACNLGGERENNQVNPKQSKKNQSKINRLMVRMGQRGVEKLAKKEQDKGQERICGLE