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Sed0003416 (gene) of Chayote v1 genome

Gene IDSed0003416
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG06:9774698..9775405
RNA-Seq ExpressionSed0003416
SyntenySed0003416
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607014.1 Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.8e-0441.18Show/hide
Query:  ARAAMALAMAVLILAISARGCNAASQSPLSFGNETTATISTTRCDGRIDECLGGEDDV---DYLFPSLVNIINPATAITPNKDKP
        A A MA   A+++L ++A   NAAS S  +FGNET A   +T CD R +ECL G+DDV   D+L  + V+ ++  +  T N+++P
Subjt:  ARAAMALAMAVLILAISARGCNAASQSPLSFGNETTATISTTRCDGRIDECLGGEDDV---DYLFPSLVNIINPATAITPNKDKP

KAG6607070.1 hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sororia]1.2e-1341.96Show/hide
Query:  AAMALAMAVLILAISARGCNAASQSPLSFGNETTATISTTRCDGRIDECLGGEDDVDYLFPSLVNIINPATAI-TPNKDKPACERPDSKYDCLGRRRQIS
        AA A AM V IL +S   C+ AS +P S+GN T A  ++  CDGR++EC+  EDD +  FPSL+       +  T N++KP CERP     C   RR  +
Subjt:  AAMALAMAVLILAISARGCNAASQSPLSFGNETTATISTTRCDGRIDECLGGEDDVDYLFPSLVNIINPATAI-TPNKDKPACERPDSKYDCLGRRRQIS

Query:  EQETCDTYKRNC
        + + C TY R C
Subjt:  EQETCDTYKRNC

KAG6607071.1 hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia]5.5e-1138.33Show/hide
Query:  SRTARAAMALAMAVLILAISARGCNAASQSPLSFGNETTATISTTRCDGRIDECLGGEDDVDYLFPSLV----NIINPATAITPNKDKPACERPDSKYDC
        S +     A AM V IL +S   CN AS +P S+GN T A  ++  CDGR++EC+  E D    FPSL       I+P++    N +K  CERPD    C
Subjt:  SRTARAAMALAMAVLILAISARGCNAASQSPLSFGNETTATISTTRCDGRIDECLGGEDDVDYLFPSLV----NIINPATAITPNKDKPACERPDSKYDC

Query:  LGRRRQISEQETCDTYKRNC
           RR       C  Y R C
Subjt:  LGRRRQISEQETCDTYKRNC

TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATTTTCTCGAACCGCCCGTGCTGCAATGGCTCTGGCAATGGCAGTGCTGATTTTAGCCATTAGTGCTCGAGGCTGCAATGCTGCTTCTCAAAGTCCTTTGAGTTT
CGGCAACGAGACCACTGCCACTATTTCAACGACGCGATGCGATGGACGAATCGATGAGTGCCTCGGAGGTGAAGATGATGTCGACTACTTGTTTCCAAGCCTTGTGAACA
TTATTAATCCTGCTACTGCCATCACCCCGAACAAAGATAAGCCTGCATGTGAACGGCCGGATTCGAAGTATGACTGTCTCGGCCGTAGACGCCAAATCTCTGAGCAAGAA
ACTTGTGACACATATAAGCGCAACTGTCCTCCCTAG
mRNA sequenceShow/hide mRNA sequence
GGCATCTTTATCTTTCTTCTCTTCTAATTTATAAACTGAAAGCTTAGCTCCAATTATTGTTCATCCATTGTTTCTTTTTTTTTTCCTCCCTCCATTCTCAATCCAGTTCT
ATGAGATTTTCTCGAACCGCCCGTGCTGCAATGGCTCTGGCAATGGCAGTGCTGATTTTAGCCATTAGTGCTCGAGGCTGCAATGCTGCTTCTCAAAGTCCTTTGAGTTT
CGGCAACGAGACCACTGCCACTATTTCAACGACGCGATGCGATGGACGAATCGATGAGTGCCTCGGAGGTGAAGATGATGTCGACTACTTGTTTCCAAGCCTTGTGAACA
TTATTAATCCTGCTACTGCCATCACCCCGAACAAAGATAAGCCTGCATGTGAACGGCCGGATTCGAAGTATGACTGTCTCGGCCGTAGACGCCAAATCTCTGAGCAAGAA
ACTTGTGACACATATAAGCGCAACTGTCCTCCCTAGTAGATCTAGAATGTGATAAGTCGATATGTACGTTATAATATCTTTAAGTTTATCTACTAATTCTACTTCCACTT
GCCTATGCCAGGTTTCCAACTCCACTTCCCTTGGAACTTCACCTTTATTCTTCATATTATAATTGTATACTCTGCTTGTTCGGCGAATGTAATAACAAAAGTGTTAAAAT
ATGGTGAAATCCCTACCTAAAGGGAAGTTTATTTAAAATTTTAATGCC
Protein sequenceShow/hide protein sequence
MRFSRTARAAMALAMAVLILAISARGCNAASQSPLSFGNETTATISTTRCDGRIDECLGGEDDVDYLFPSLVNIINPATAITPNKDKPACERPDSKYDCLGRRRQISEQE
TCDTYKRNCPP