; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0003422 (gene) of Chayote v1 genome

Gene IDSed0003422
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationLG11:32702054..32702551
RNA-Seq ExpressionSed0003422
SyntenySed0003422
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY82736.1 hypothetical protein Acr_02g0009760 [Actinidia rufa]1.3e-0737.04Show/hide
Query:  PTLRPSF-VSPSSLHPAQSSRPAPSHSPNTPPTSPSVPSPLQQ-------------KSVNSPCIPAASVEPAHPPMVVPHALPTPTIFDAARHPMITRAR
        P    SF + P SL     S P P H   TP  SP V SP QQ              +++SP  P  S  P   P   P  LP P       HPMITRA+
Subjt:  PTLRPSF-VSPSSLHPAQSSRPAPSHSPNTPPTSPSVPSPLQQ-------------KSVNSPCIPAASVEPAHPPMVVPHALPTPTIFDAARHPMITRAR

Query:  AGVSKPKKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPPK
          + KP++ +   TT+  +P  +EP  + QAL    W+ AM  E  AL  N TW+LV P PK
Subjt:  AGVSKPKKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPPK

KAF8669207.1 hypothetical protein HU200_051537 [Digitaria exilis]1.0e-0738.93Show/hide
Query:  PSHSPNTPPTSPSVPS-PLQQKSVNSPCIPAASVEPAHPPMVVPHALPTPTIFDAARHPMITRARAGVSKPK-KWSYVATTEASVPSHIEPHNIKQALNS
        P+ +P  PP SP   S P      + P  P  +  P+ P   VP   P PT   A  H M+TRA+AG+  P  ++++VA T+ S+PS   P +++ AL+ 
Subjt:  PSHSPNTPPTSPSVPS-PLQQKSVNSPCIPAASVEPAHPPMVVPHALPTPTIFDAARHPMITRARAGVSKPK-KWSYVATTEASVPSHIEPHNIKQALNS

Query:  LPWKCAMESEMKALQLNDTWQLVQPPPKLHK
          W  AM+ E KALQ N+TW LV  PP  H+
Subjt:  LPWKCAMESEMKALQLNDTWQLVQPPPKLHK

MCH79660.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trifolium medium]2.0e-0834.21Show/hide
Query:  SLSVPSFIQFPTLRPSFVSPSSLHPAQSSRP--APSHSPNTPPTSPSVPSPLQQKSVNSPCIP-------------AASVEPAHPPMVVP----------
        SLS P+ I FP    S VSP+ ++ +  S P   P  +  TP +  S P+P+Q  SV +   P              +S E   PP+  P          
Subjt:  SLSVPSFIQFPTLRPSFVSPSSLHPAQSSRP--APSHSPNTPPTSPSVPSPLQQKSVNSPCIP-------------AASVEPAHPPMVVP----------

Query:  -HALPTPTIFDAARHPMITRARAGVSKPKKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPPKLHKNFI
         H +P P I D   HPM+TR + G  KPK +           + +EPH +K A++   W  AM+SE KAL  N+TW LV  PP  H+N I
Subjt:  -HALPTPTIFDAARHPMITRARAGVSKPKKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPPKLHKNFI

RDX76104.1 putative mitochondrial protein, partial [Mucuna pruriens]1.3e-0744.93Show/hide
Query:  HPMITRARAGVSKPKKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPP
        HP+ITR++ G+SKPK ++ V  +   V +H EP  +K AL+S  W+ AM+ E   L  N TW LV  PP
Subjt:  HPMITRARAGVSKPKKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPP

XP_016168446.1 flocculation protein FLO11-like [Arachis ipaensis]1.0e-0733.54Show/hide
Query:  PTLRPSFVS---PSSLHPAQSSRPAPSHSPNTPPTSPSVP--------SPLQQKSVNSPCIPAASVEPAHPPMVVPHALPTPTIFDAARHPMITRARAGV
        PT+ P F     PS L P  +     +   + P +  ++P        S      V+ P     +++P    +V+P  LP P + +  RHPM+TR++ G 
Subjt:  PTLRPSFVS---PSSLHPAQSSRPAPSHSPNTPPTSPSVP--------SPLQQKSVNSPCIPAASVEPAHPPMVVPHALPTPTIFDAARHPMITRARAGV

Query:  SKPKKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPPKLH
         KPK ++ V T  AS  +   P +++QAL S  WK AM+ E  AL  N TWQLV  PP  H
Subjt:  SKPKKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPPKLH

TrEMBL top hitse value%identityAlignment
A0A2N9F778 Reverse transcriptase Ty1/copia-type domain-containing protein9.9e-0939.67Show/hide
Query:  PSVPSPLQQKSVNSPCIPAASVEPAHPPMVVPHALPTPTIF----DAARHPMITRARAGVSKPKKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMES
        P +PSPL   S+N P IP+ ++E +      PH +P+P         + HPM TR R G+ KP     +A    + P   EP +IK AL  L W+ AM+ 
Subjt:  PSVPSPLQQKSVNSPCIPAASVEPAHPPMVVPHALPTPTIF----DAARHPMITRARAGVSKPKKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMES

Query:  EMKALQLNDTWQLVQPPPKLH
        EMKAL  N+TW LV   P +H
Subjt:  EMKALQLNDTWQLVQPPPKLH

A0A392LXH9 Retrovirus-related Pol polyprotein from transposon TNT 1-949.9e-0934.21Show/hide
Query:  SLSVPSFIQFPTLRPSFVSPSSLHPAQSSRP--APSHSPNTPPTSPSVPSPLQQKSVNSPCIP-------------AASVEPAHPPMVVP----------
        SLS P+ I FP    S VSP+ ++ +  S P   P  +  TP +  S P+P+Q  SV +   P              +S E   PP+  P          
Subjt:  SLSVPSFIQFPTLRPSFVSPSSLHPAQSSRP--APSHSPNTPPTSPSVPSPLQQKSVNSPCIP-------------AASVEPAHPPMVVP----------

Query:  -HALPTPTIFDAARHPMITRARAGVSKPKKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPPKLHKNFI
         H +P P I D   HPM+TR + G  KPK +           + +EPH +K A++   W  AM+SE KAL  N+TW LV  PP  H+N I
Subjt:  -HALPTPTIFDAARHPMITRARAGVSKPKKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPPKLHKNFI

A0A5K1AMR4 Integrase catalytic domain-containing protein (Fragment)8.4e-0834.38Show/hide
Query:  VSPSSLHPAQSSRPAPSHSPNT---------PPTSPSV-----PSPLQQKSVNSPCIPAASVEPAHPPMVVPHALPT---PTIFDAARHPMITRARAGVS
        V+P  +    +S P PS S +T         PP SP +     PSP     + SP +P++   P+  P   P  +P+   P       HPM+TR++ G+ 
Subjt:  VSPSSLHPAQSSRPAPSHSPNT---------PPTSPSV-----PSPLQQKSVNSPCIPAASVEPAHPPMVVPHALPT---PTIFDAARHPMITRARAGVS

Query:  KPKKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPPKLH
        KP    Y+ TT A      EP +   AL    W+ AME EM AL  NDTW LV   P +H
Subjt:  KPKKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPPKLH

A0A6J5XYF2 Uncharacterized protein1.1e-0734.9Show/hide
Query:  PTLRPSFVSPSSLH-PAQSSRPA--PSH-SPNTPPTSPSVPSPLQQ--KSVNSPCIPAASVEPAHPPMVVPHALPTPTIFDAARHPMITRARAGVSKPKK
        P   PS   P + H P+Q+  P   PS+ +P  P T P  PSP++   ++ N   +   + +P+ PP   P ++  P + D   H M+TRA+AG+SKP  
Subjt:  PTLRPSFVSPSSLH-PAQSSRPA--PSH-SPNTPPTSPSVPSPLQQ--KSVNSPCIPAASVEPAHPPMVVPHALPTPTIFDAARHPMITRARAGVSKPKK

Query:  WSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLV
           +  T+  +PS +EP  + QA+    W+ AM +E  AL  N TW+LV
Subjt:  WSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLV

A0A7J0E996 Integrase catalytic domain-containing protein6.4e-0837.04Show/hide
Query:  PTLRPSF-VSPSSLHPAQSSRPAPSHSPNTPPTSPSVPSPLQQ-------------KSVNSPCIPAASVEPAHPPMVVPHALPTPTIFDAARHPMITRAR
        P    SF + P SL     S P P H   TP  SP V SP QQ              +++SP  P  S  P   P   P  LP P       HPMITRA+
Subjt:  PTLRPSF-VSPSSLHPAQSSRPAPSHSPNTPPTSPSVPSPLQQ-------------KSVNSPCIPAASVEPAHPPMVVPHALPTPTIFDAARHPMITRAR

Query:  AGVSKPKKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPPK
          + KP++ +   TT+  +P  +EP  + QAL    W+ AM  E  AL  N TW+LV P PK
Subjt:  AGVSKPKKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPPK

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.3e-0534.48Show/hide
Query:  PSFVSPSSLHPAQ--SSRPAPSHSPNTPPTSPSVPSPLQQKSVNSPCIPAASVEPAHPPMVVPHALPTPTIFDAARHPMITRARAGVSKPKKWSYVATTE
        PS ++ S   PAQ  SS P+P+ S ++  TSP+ PS L                  HPP  +   +          H M TRA+AG+ KP     +A   
Subjt:  PSFVSPSSLHPAQ--SSRPAPSHSPNTPPTSPSVPSPLQQKSVNSPCIPAASVEPAHPPMVVPHALPTPTIFDAARHPMITRARAGVSKPKKWSYVATTE

Query:  ASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPP
         S+ +  EP    QAL    W+ AM SE+ A   N TW LV PPP
Subjt:  ASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPP

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.6e-0835.37Show/hide
Query:  PTLRPSFVSPSSLHPAQSSRPAPSHSPNTP-PTSPSVPSPLQQKSVNSPCIPAASV---EPAHPPM------VVPHALPTPTIFD------AARHPMITR
        PT +P     S+ +    + P    +PN+P P SP+  SPL Q  ++SP IP  S    EP  P         +P  LP P I           H M TR
Subjt:  PTLRPSFVSPSSLHPAQSSRPAPSHSPNTP-PTSPSVPSPLQQKSVNSPCIPAASV---EPAHPPM------VVPHALPTPTIFD------AARHPMITR

Query:  ARAGVSKP-KKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPP
        A+ G+ KP +K+SY      S+ ++ EP    QA+    W+ AM SE+ A   N TW LV PPP
Subjt:  ARAGVSKP-KKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPP

Arabidopsis top hitse value%identityAlignment
ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)1.5e-0440.3Show/hide
Query:  MITRARAGVSK-PKKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPP
        M+TR++AG++K   K+S   TT        EP ++  AL    W  AM+ E+ AL  N TW LV PP
Subjt:  MITRARAGVSK-PKKWSYVATTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCTATCTGTACCGTCCTTCATTCAGTTTCCAACTCTTCGACCTAGCTTTGTTTCCCCTTCCTCTCTTCATCCTGCTCAATCATCACGTCCTGCTCCAAGCCATTC
TCCAAACACTCCTCCAACATCCCCTTCTGTGCCGTCTCCATTGCAACAGAAGAGTGTTAATTCTCCATGCATTCCTGCTGCTTCTGTTGAGCCTGCGCATCCCCCGATGG
TTGTCCCTCACGCTCTTCCTACTCCGACAATTTTTGATGCTGCTCGACATCCCATGATTACTCGAGCTCGGGCTGGTGTGTCTAAACCGAAAAAGTGGTCCTATGTGGCT
ACGACTGAAGCATCTGTTCCCTCTCACATTGAACCTCACAATATTAAACAGGCCTTGAATTCTCTGCCTTGGAAATGTGCTATGGAGTCAGAAATGAAAGCTTTGCAATT
AAATGATACTTGGCAGTTAGTTCAACCCCCACCAAAATTACACAAAAACTTTATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCCTATCTGTACCGTCCTTCATTCAGTTTCCAACTCTTCGACCTAGCTTTGTTTCCCCTTCCTCTCTTCATCCTGCTCAATCATCACGTCCTGCTCCAAGCCATTC
TCCAAACACTCCTCCAACATCCCCTTCTGTGCCGTCTCCATTGCAACAGAAGAGTGTTAATTCTCCATGCATTCCTGCTGCTTCTGTTGAGCCTGCGCATCCCCCGATGG
TTGTCCCTCACGCTCTTCCTACTCCGACAATTTTTGATGCTGCTCGACATCCCATGATTACTCGAGCTCGGGCTGGTGTGTCTAAACCGAAAAAGTGGTCCTATGTGGCT
ACGACTGAAGCATCTGTTCCCTCTCACATTGAACCTCACAATATTAAACAGGCCTTGAATTCTCTGCCTTGGAAATGTGCTATGGAGTCAGAAATGAAAGCTTTGCAATT
AAATGATACTTGGCAGTTAGTTCAACCCCCACCAAAATTACACAAAAACTTTATTTAG
Protein sequenceShow/hide protein sequence
MSLSVPSFIQFPTLRPSFVSPSSLHPAQSSRPAPSHSPNTPPTSPSVPSPLQQKSVNSPCIPAASVEPAHPPMVVPHALPTPTIFDAARHPMITRARAGVSKPKKWSYVA
TTEASVPSHIEPHNIKQALNSLPWKCAMESEMKALQLNDTWQLVQPPPKLHKNFI