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Sed0003460 (gene) of Chayote v1 genome

Gene IDSed0003460
OrganismSechium edule (Chayote v1)
DescriptionGermin-like protein
Genome locationLG04:38462835..38464136
RNA-Seq ExpressionSed0003460
SyntenySed0003460
Gene Ontology termsGO:0048046 - apoplast (cellular component)
GO:0030145 - manganese ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606852.1 Germin-like protein subfamily 3 member 4, partial [Cucurbita argyrosperma subsp. sororia]7.4e-0775Show/hide
Query:  MNVSGAMFNPDDSSRFIDKFLGRLRALSSLSDLKFNPNTKVTLP
        +NV+GAMF P DSS FIDKFL +L+ALSSL DLKFNPN  VTLP
Subjt:  MNVSGAMFNPDDSSRFIDKFLGRLRALSSLSDLKFNPNTKVTLP
XP_022948659.1 germin-like protein subfamily 3 member 4 [Cucurbita moschata]2.8e-0672.73Show/hide
Query:  MNVSGAMFNPDDSSRFIDKFLGRLRALSSLSDLKFNPNTKVTLP
        +NV+GAMF P DSS FIDKFL +L+ALSSL +LKFNPN  VTLP
Subjt:  MNVSGAMFNPDDSSRFIDKFLGRLRALSSLSDLKFNPNTKVTLP
XP_022998490.1 germin-like protein subfamily 3 member 4 [Cucurbita maxima]1.4e-0570.45Show/hide
Query:  MNVSGAMFNPDDSSRFIDKFLGRLRALSSLSDLKFNPNTKVTLP
        +NV+GAMF P DSS FID FL +L+ALSSL +LKFNPN  VTLP
Subjt:  MNVSGAMFNPDDSSRFIDKFLGRLRALSSLSDLKFNPNTKVTLP
XP_023522282.1 germin-like protein subfamily 3 member 4 [Cucurbita pepo subsp. pepo]2.8e-0672.73Show/hide
Query:  MNVSGAMFNPDDSSRFIDKFLGRLRALSSLSDLKFNPNTKVTLP
        +NV+GAMF P DSS FIDKFL +L+ALSSL +LKFNPN  VTLP
Subjt:  MNVSGAMFNPDDSSRFIDKFLGRLRALSSLSDLKFNPNTKVTLP
XP_038905670.1 germin-like protein subfamily 3 member 4 [Benincasa hispida]6.2e-0670.45Show/hide
Query:  MNVSGAMFNPDDSSRFIDKFLGRLRALSSLSDLKFNPNTKVTLP
        +N++GAMF+P DSS FIDKFL RL+ALSS S+ KFNPN  VTLP
Subjt:  MNVSGAMFNPDDSSRFIDKFLGRLRALSSLSDLKFNPNTKVTLP
TrEMBL top hitse value%identityAlignment
A0A6J1DJ19 Germin-like protein9.7e-0559.52Show/hide
Query:  MNVSGAMFNPDDSSRFIDKFLGRLRALSSLSDLKFNPNTKVT
        +N++GAMF P DS+  + KFL RL++LSSLS LKFNPN  +T
Subjt:  MNVSGAMFNPDDSSRFIDKFLGRLRALSSLSDLKFNPNTKVT
A0A6J1GAI2 Germin-like protein1.4e-0672.73Show/hide
Query:  MNVSGAMFNPDDSSRFIDKFLGRLRALSSLSDLKFNPNTKVTLP
        +NV+GAMF P DSS FIDKFL +L+ALSSL +LKFNPN  VTLP
Subjt:  MNVSGAMFNPDDSSRFIDKFLGRLRALSSLSDLKFNPNTKVTLP
A0A6J1KCN7 Germin-like protein6.7e-0670.45Show/hide
Query:  MNVSGAMFNPDDSSRFIDKFLGRLRALSSLSDLKFNPNTKVTLP
        +NV+GAMF P DSS FID FL +L+ALSSL +LKFNPN  VTLP
Subjt:  MNVSGAMFNPDDSSRFIDKFLGRLRALSSLSDLKFNPNTKVTLP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACGTCAGCGGTGCCATGTTCAACCCTGATGACTCGAGCCGTTTCATAGACAAGTTCCTGGGGAGATTAAGAGCTCTTTCTTCACTCTCAGATCTCAAATTCAACCC
AAATACCAAAGTGACTCTGCCATTGCTGAAGCTCGAGGCCATATTTCCTCTCATCCAAAACCGTCAGACTATTGTTTTCAAGAAAGTCACCAATGGCCACAGTCCAGATA
ATAGTATACAGAAGACACAATCGTTTGATATCCCGAAGAAACAATTCTTTTGGTTGACAATGGTACCGTTGAGCGAGCGAGCGAATGAAAGGGAAGGTGGGGTTGACAGA
GATTTCAATAACTTGGCCAAGAGTGCCACCACTTGGCAAGAAGGATTTGATCAAACGATCAGCCTTCCAACATCCCGGGACAATCTCATGCGCTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACGTCAGCGGTGCCATGTTCAACCCTGATGACTCGAGCCGTTTCATAGACAAGTTCCTGGGGAGATTAAGAGCTCTTTCTTCACTCTCAGATCTCAAATTCAACCC
AAATACCAAAGTGACTCTGCCATTGCTGAAGCTCGAGGCCATATTTCCTCTCATCCAAAACCGTCAGACTATTGTTTTCAAGAAAGTCACCAATGGCCACAGTCCAGATA
ATAGTATACAGAAGACACAATCGTTTGATATCCCGAAGAAACAATTCTTTTGGTTGACAATGGTACCGTTGAGCGAGCGAGCGAATGAAAGGGAAGGTGGGGTTGACAGA
GATTTCAATAACTTGGCCAAGAGTGCCACCACTTGGCAAGAAGGATTTGATCAAACGATCAGCCTTCCAACATCCCGGGACAATCTCATGCGCTCCTGA
Protein sequenceShow/hide protein sequence
MNVSGAMFNPDDSSRFIDKFLGRLRALSSLSDLKFNPNTKVTLPLLKLEAIFPLIQNRQTIVFKKVTNGHSPDNSIQKTQSFDIPKKQFFWLTMVPLSERANEREGGVDR
DFNNLAKSATTWQEGFDQTISLPTSRDNLMRS