CuGenDBv2

Gene ID	Sed0003465
Organism	Sechium edule (Chayote v1)
Description	ribonuclease P protein subunit p25-like protein
Genome location	LG01:18511379..18513217
RNA-Seq Expression	Sed0003465
Synteny	Sed0003465
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008466464.1 PREDICTED: ribonuclease P protein subunit p25-like protein isoform X2 [Cucumis melo]

2.2e-40

53.74

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Query:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY
        G N+   +    GRAINK VTIVELI +  VGLHQNTS+                                             PPLP+ELVK F+EY Y
Subjt:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY

Query:  EGGSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR------------GGYNQDFPP-QGRGCG
        EGGSPHDQG GRGRGRG N RGRS  R PPGNGFVAN+YDDGDWDRNR      GRGR RGRSGGNFRG GR            GGYNQD PP QGR   
Subjt:  EGGSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR------------GGYNQDFPP-QGRGCG

Query:  GHGRGRGGFHGRDHGFSPYGGPIQAAA
        G GRGRGG+ GR  GF   GGPIQAAA
Subjt:  GHGRGRGGFHGRDHGFSPYGGPIQAAA

XP_022975826.1 ribonuclease P protein subunit p25-like protein isoform X1 [Cucurbita maxima]

1.9e-39

52.63

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Query:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY
        G N+   +    GRAINK VTIVELI +  VGLHQNTS+                                             PPLP+ELVK F+EY Y
Subjt:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY

Query:  EG-GSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR-------------GGYNQDFPPQGRGC
        EG GSPHDQG GRGRGRG + RGRS  R PPGNGFV N+YDDGDWDRNR      GRGR RGR GGNFRG GR             GGYNQDFPPQGR  
Subjt:  EG-GSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR-------------GGYNQDFPPQGRGC

Query:  GGHGRGRGGFHGRDHGFSPYGGPIQAAA
         G GRGRGG+ GR  GF   GGPIQAAA
Subjt:  GGHGRGRGGFHGRDHGFSPYGGPIQAAA

XP_022975827.1 ribonuclease P protein subunit p25-like protein isoform X2 [Cucurbita maxima]

1.9e-39

52.63

Show/hide

Query:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY
        G N+   +    GRAINK VTIVELI +  VGLHQNTS+                                             PPLP+ELVK F+EY Y
Subjt:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY

Query:  EG-GSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR-------------GGYNQDFPPQGRGC
        EG GSPHDQG GRGRGRG + RGRS  R PPGNGFV N+YDDGDWDRNR      GRGR RGR GGNFRG GR             GGYNQDFPPQGR  
Subjt:  EG-GSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR-------------GGYNQDFPPQGRGC

Query:  GGHGRGRGGFHGRDHGFSPYGGPIQAAA
         G GRGRGG+ GR  GF   GGPIQAAA
Subjt:  GGHGRGRGGFHGRDHGFSPYGGPIQAAA

XP_038900199.1 ribonuclease P protein subunit p25-like protein isoform X1 [Benincasa hispida]

2.5e-39

53.07

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Query:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY
        G N+   +    GRAINK VTIVELI +  VGLHQNTS+                                             PPLP+ELVK F+EY Y
Subjt:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY

Query:  EG-GSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR-------------GGYNQDFPPQGRGC
        EG GSPHDQG GRGRGRG N RGRS  R PPGNGFVAN+YDDGDWDRNR      GRGR RGRSGGNFRG GR             GGYNQD P QGR  
Subjt:  EG-GSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR-------------GGYNQDFPPQGRGC

Query:  GGHGRGRGGFHGRDHGFSPYGGPIQAAA
         G GRGRGG+ GR  GF   GGPIQAAA
Subjt:  GGHGRGRGGFHGRDHGFSPYGGPIQAAA

XP_038900201.1 ribonuclease P protein subunit p25-like protein isoform X3 [Benincasa hispida]

1.0e-40

53.3

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Query:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY
        G N+   +    GRAINK VTIVELI +  VGLHQNTS+                                             PPLP+ELVK F+EY Y
Subjt:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY

Query:  EGGSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR-------------GGYNQDFPPQGRGCG
        EGGSPHDQG GRGRGRG N RGRS  R PPGNGFVAN+YDDGDWDRNR      GRGR RGRSGGNFRG GR             GGYNQD P QGR   
Subjt:  EGGSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR-------------GGYNQDFPPQGRGCG

Query:  GHGRGRGGFHGRDHGFSPYGGPIQAAA
        G GRGRGG+ GR  GF   GGPIQAAA
Subjt:  GHGRGRGGFHGRDHGFSPYGGPIQAAA

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CRH3 ribonuclease P protein subunit p25-like protein isoform X2

1.1e-40

53.74

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Query:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY
        G N+   +    GRAINK VTIVELI +  VGLHQNTS+                                             PPLP+ELVK F+EY Y
Subjt:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY

Query:  EGGSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR------------GGYNQDFPP-QGRGCG
        EGGSPHDQG GRGRGRG N RGRS  R PPGNGFVAN+YDDGDWDRNR      GRGR RGRSGGNFRG GR            GGYNQD PP QGR   
Subjt:  EGGSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR------------GGYNQDFPP-QGRGCG

Query:  GHGRGRGGFHGRDHGFSPYGGPIQAAA
        G GRGRGG+ GR  GF   GGPIQAAA
Subjt:  GHGRGRGGFHGRDHGFSPYGGPIQAAA

A0A5A7V7U0 Ribonuclease P protein subunit p25-like protein isoform X1

2.7e-39

53.51

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Query:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY
        G N+   +    GRAINK VTIVELI +  VGLHQNTS+                                             PPLP+ELVK F+EY Y
Subjt:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY

Query:  EG-GSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR------------GGYNQDFPP-QGRGC
        EG GSPHDQG GRGRGRG N RGRS  R PPGNGFVAN+YDDGDWDRNR      GRGR RGRSGGNFRG GR            GGYNQD PP QGR  
Subjt:  EG-GSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR------------GGYNQDFPP-QGRGC

Query:  GGHGRGRGGFHGRDHGFSPYGGPIQAAA
         G GRGRGG+ GR  GF   GGPIQAAA
Subjt:  GGHGRGRGGFHGRDHGFSPYGGPIQAAA

A0A5D3E5Q9 Ribonuclease P protein subunit p25-like protein isoform X1

2.7e-39

53.51

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Query:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY
        G N+   +    GRAINK VTIVELI +  VGLHQNTS+                                             PPLP+ELVK F+EY Y
Subjt:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY

Query:  EG-GSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR------------GGYNQDFPP-QGRGC
        EG GSPHDQG GRGRGRG N RGRS  R PPGNGFVAN+YDDGDWDRNR      GRGR RGRSGGNFRG GR            GGYNQD PP QGR  
Subjt:  EG-GSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR------------GGYNQDFPP-QGRGC

Query:  GGHGRGRGGFHGRDHGFSPYGGPIQAAA
         G GRGRGG+ GR  GF   GGPIQAAA
Subjt:  GGHGRGRGGFHGRDHGFSPYGGPIQAAA

A0A6J1IFA1 ribonuclease P protein subunit p25-like protein isoform X1

9.2e-40

52.63

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Query:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY
        G N+   +    GRAINK VTIVELI +  VGLHQNTS+                                             PPLP+ELVK F+EY Y
Subjt:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY

Query:  EG-GSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR-------------GGYNQDFPPQGRGC
        EG GSPHDQG GRGRGRG + RGRS  R PPGNGFV N+YDDGDWDRNR      GRGR RGR GGNFRG GR             GGYNQDFPPQGR  
Subjt:  EG-GSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR-------------GGYNQDFPPQGRGC

Query:  GGHGRGRGGFHGRDHGFSPYGGPIQAAA
         G GRGRGG+ GR  GF   GGPIQAAA
Subjt:  GGHGRGRGGFHGRDHGFSPYGGPIQAAA

A0A6J1ILQ2 ribonuclease P protein subunit p25-like protein isoform X2

9.2e-40

52.63

Show/hide

Query:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY
        G N+   +    GRAINK VTIVELI +  VGLHQNTS+                                             PPLP+ELVK F+EY Y
Subjt:  GGNDFAIRGDGKGRAINKAVTIVELI-QVFVGLHQNTSL---------------------------------------------PPLPSELVKAFLEYVY

Query:  EG-GSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR-------------GGYNQDFPPQGRGC
        EG GSPHDQG GRGRGRG + RGRS  R PPGNGFV N+YDDGDWDRNR      GRGR RGR GGNFRG GR             GGYNQDFPPQGR  
Subjt:  EG-GSPHDQGQGRGRGRGCNSRGRS--REPPGNGFVANKYDDGDWDRNRSRIVRGGRGR-RGRSGGNFRGCGR-------------GGYNQDFPPQGRGC

Query:  GGHGRGRGGFHGRDHGFSPYGGPIQAAA
         G GRGRGG+ GR  GF   GGPIQAAA
Subjt:  GGHGRGRGGFHGRDHGFSPYGGPIQAAA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G20220.1 Alba DNA/RNA-binding protein

2.6e-10

35.2

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Query:  GRAINKAVTIVELIQVFV-GLHQNTSLP---------------------------------------------PLPSELVKAFLEYVYEGGSPHDQGQGR
        GRAINK+VTIVELI+  + GLHQ TS+                                              P+P E+VK   E  YEG     +G+G 
Subjt:  GRAINKAVTIVELIQVFV-GLHQNTSLP---------------------------------------------PLPSELVKAFLEYVYEGGSPHDQGQGR

Query:  GRGRGCNSRGRSREPPGNGFVANKYDDGDWDRN-------RSRIVRGGRGRRGRSGGNFRG-CGRGGYNQDFP-----PQGRGCGGHGRGRGGFHG
         RGRG   RGR R   GNG    +YDDG   R         +    GGRGR GR  G        GG  QD        +GRG G  GRGRGG++G
Subjt:  GRGRGCNSRGRSREPPGNGFVANKYDDGDWDRN-------RSRIVRGGRGRRGRSGGNFRG-CGRGGYNQDFP-----PQGRGCGGHGRGRGGFHG

AT1G76010.1 Alba DNA/RNA-binding protein

9.5e-13

37.09

Show/hide

Query:  GRAINKAVTIVELIQVFV-GLHQNTS-----------------LP----------------------------PLPSELVKAFLEYVYEG--GSPHDQGQ
        GRAINK VTIVELI+  +  LHQNTS                 LP                            P+P ELVK   +  YEG  GSP  +G+
Subjt:  GRAINKAVTIVELIQVFV-GLHQNTS-----------------LP----------------------------PLPSELVKAFLEYVYEG--GSPHDQGQ

Query:  GRGRGRGCNSRGRSREPPGNGFVANKYDDGDWDRNRSRIVRGGRGR----RGRSGGNFRGCGR-------GGYNQDFPPQGRGCGGHG------RGRGGF
        GRGRGRG   RGR R   GN +V  +++DG W+R +S     GRGR    RGR  G + G          GGY  D P + RG    G      +GRGG+
Subjt:  GRGRGRGCNSRGRSREPPGNGFVANKYDDGDWDRNRSRIVRGGRGR----RGRSGGNFRGCGR-------GGYNQDFPPQGRGCGGHG------RGRGGF

Query:  HGRDHGFSPYGGP
         G   G   Y GP
Subjt:  HGRDHGFSPYGGP

Sequences

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CDS sequence

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ATGAAGCTTCCCGCCGGTGAAGGAAGAGGTCTGGAATCTTCTTCGATTTTTGCAGGTGGAAATGATTTCGCCATTAGAGGCGATGGGAAGGGCAGGGCGATAAACAAGGC
TGTGACCATCGTGGAACTAATCCAGGTTTTTGTAGGTCTTCATCAGAATACCTCACTGCCACCACTTCCTTCTGAGCTTGTGAAAGCATTCCTCGAGTATGTCTACGAGG
GAGGTTCACCTCATGATCAGGGTCAAGGTCGAGGTAGAGGACGGGGCTGTAATAGCAGAGGAAGGTCCAGGGAACCTCCTGGTAATGGCTTCGTGGCTAATAAATATGAC
GATGGAGATTGGGATCGTAATAGGAGTCGTATTGTAAGAGGAGGAAGGGGCAGACGAGGGAGGAGTGGTGGCAATTTTCGTGGCTGTGGAAGAGGAGGATACAACCAAGA
CTTCCCACCTCAAGGCCGTGGATGTGGTGGCCATGGACGTGGAAGGGGTGGGTTTCATGGAAGGGACCATGGTTTCAGTCCTTATGGAGGACCGATCCAAGCTGCCGCAT
GA

mRNA sequence

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Protein sequence

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MKLPAGEGRGLESSSIFAGGNDFAIRGDGKGRAINKAVTIVELIQVFVGLHQNTSLPPLPSELVKAFLEYVYEGGSPHDQGQGRGRGRGCNSRGRSREPPGNGFVANKYD
DGDWDRNRSRIVRGGRGRRGRSGGNFRGCGRGGYNQDFPPQGRGCGGHGRGRGGFHGRDHGFSPYGGPIQAAA

Sed0003465 (gene) of Chayote v1 genome