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Sed0003492 (gene) of Chayote v1 genome

Gene IDSed0003492
OrganismSechium edule (Chayote v1)
DescriptionNucleolar protein 10
Genome locationLG01:71142664..71145697
RNA-Seq ExpressionSed0003492
SyntenySed0003492
Gene Ontology termsGO:0031118 - rRNA pseudouridine synthesis (biological process)
GO:0031120 - snRNA pseudouridine synthesis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0031429 - box H/ACA snoRNP complex (cellular component)
GO:0090661 - box H/ACA telomerase RNP complex (cellular component)
GO:0034513 - box H/ACA snoRNA binding (molecular function)
GO:0070034 - telomerase RNA binding (molecular function)
InterPro domainsIPR007264 - H/ACA ribonucleoprotein complex, subunit Nop10
IPR036756 - H/ACA ribonucleoprotein complex, subunit Nop10 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5514599.1 hypothetical protein RHGRI_035862 [Rhododendron griersonianum]8.4e-2795.31Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY
        MYLQFYIN+ GDKVYTTKKESPLGL TQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY

KAG6606368.1 H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. sororia]8.4e-2795.31Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY
        MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDK+SRQRVLLKKRFGLLPTQ P PKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY

PIA30884.1 hypothetical protein AQUCO_05300011v1 [Aquilegia coerulea]3.8e-2795.31Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY
        MYLQFYIN+NGDKVYTTKKESPLGL TQSAHPARFSPDDK+SRQRVLLKKRFGLLPTQKPAPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY

XP_020250406.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Asparagus officinalis]1.3e-2796.88Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY
        MYLQFYINDNGDKVYTTKKESPLGL TQSAHPARFSPDDK+SRQRVLLKKRFGLLPTQKPAPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY

XP_021987349.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Helianthus annuus]4.9e-2795.31Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY
        MYLQFYIN+NGDKVYTTKKESPLGL TQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP PKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY

TrEMBL top hitse value%identityAlignment
A0A2G5CHY0 Nucleolar protein 101.8e-2795.31Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY
        MYLQFYIN+NGDKVYTTKKESPLGL TQSAHPARFSPDDK+SRQRVLLKKRFGLLPTQKPAPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY

A0A2K3MZS9 Nucleolar protein 104.1e-2793.75Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY
        MYLQFYINDNGDKVYTTKKESP+GL TQSAHPARFSPDDKFSRQR+LLKKRFGLLPTQ PAPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY

A0A2Z6MYL0 Nucleolar protein 104.1e-2793.75Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY
        MYLQFYINDNGDKVYTTKKESP+GL TQSAHPARFSPDDKFSRQR+LLKKRFGLLPTQ PAPKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY

A0A6J1EYV1 Nucleolar protein 104.1e-2795.31Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY
        MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDK+SRQRVLLKKRFGLLPTQ P PKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY

A0A6J1KA21 Nucleolar protein 104.1e-2795.31Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY
        MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDK+SRQRVLLKKRFGLLPTQ P PKY
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY

SwissProt top hitse value%identityAlignment
Q6DRH5 H/ACA ribonucleoprotein complex subunit 37.9e-2070.97Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAP
        M+LQFY+N+NG++VYT KK  P G  T SAHPARFSPDDKFSR RV +KKRFGLL TQ+P P
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAP

Q93XX8 H/ACA ribonucleoprotein complex subunit 3-like protein1.5e-2379.69Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY
        MYLQ YIN+ G+KVYTTKKESPLGL T+SAHPARFSPDDK+S+QRVLLKKRFGLLPTQ    +Y
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY

Q9CQS2 H/ACA ribonucleoprotein complex subunit 31.3e-1762.9Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAP
        M+LQ+Y+N+ GD+VYT KK  P+G  T SAHPARFSPDDK+SR R+ +KKRF +L TQ+P P
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAP

Q9NPE3 H/ACA ribonucleoprotein complex subunit 31.3e-1762.9Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAP
        M+LQ+Y+N+ GD+VYT KK  P+G  T SAHPARFSPDDK+SR R+ +KKRF +L TQ+P P
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAP

Q9V5P6 H/ACA ribonucleoprotein complex subunit 33.3e-1867.19Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY
        MYL + IN+NGD+VYT KK +  G  T SAHPARFSP+DK+SRQR+ +KKRFGLL TQKP P Y
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY

Arabidopsis top hitse value%identityAlignment
AT2G20490.1 nucleolar RNA-binding Nop10p family protein1.1e-2479.69Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY
        MYLQ YIN+ G+KVYTTKKESPLGL T+SAHPARFSPDDK+S+QRVLLKKRFGLLPTQ    +Y
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY

AT2G20490.2 nucleolar RNA-binding Nop10p family protein1.0e-2278.12Show/hide
Query:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY
        MYLQ YIN+ G+KVYTT KESPLGL T+SAHPARFSPDDK+S+QRVLLKKRFGLLPTQ    +Y
Subjt:  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATCTTCAGTTTTACATCAACGACAATGGCGACAAAGTCTACACCACAAAGAAAGAATCACCTCTTGGTTTGGTCACACAATCTGCTCATCCAGCCCGTTTTTCCCC
CGATGACAAATTCTCGAGACAGAGAGTGCTTCTTAAGAAGCGATTTGGCTTGCTACCCACACAGAAGCCAGCTCCAAAGTACTGA
mRNA sequenceShow/hide mRNA sequence
CAAGCGTCAGAGTTCTTCCGTCTGGTATTGATTTCCAAAACCCTGGAAATCATCACTGCACTTTGGATTTTTTGTATATTTGATTTGCATTCGAGACTGCATTTTTTTTC
TTCCAATTATCCATGGATGTTATGCAAGTCTTCCATGTGTAGGGTTTTTTGCATTATGTTCTGTGTAACGACTTGATTTTTCTCCGAAATTGTTCAGATTGAGAGTTCAG
CAACGATGTATCTTCAGTTTTACATCAACGACAATGGCGACAAAGTCTACACCACAAAGAAAGAATCACCTCTTGGTTTGGTCACACAATCTGCTCATCCAGCCCGTTTT
TCCCCCGATGACAAATTCTCGAGACAGAGAGTGCTTCTTAAGAAGCGATTTGGCTTGCTACCCACACAGAAGCCAGCTCCAAAGTACTGA
Protein sequenceShow/hide protein sequence
MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY