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Sed0003502 (gene) of Chayote v1 genome

Gene IDSed0003502
OrganismSechium edule (Chayote v1)
DescriptionK-box region and MADS-box transcription factor family protein
Genome locationLG05:29644690..29645197
RNA-Seq ExpressionSed0003502
SyntenySed0003502
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608260.1 hypothetical protein SDJN03_01602, partial [Cucurbita argyrosperma subsp. sororia]7.2e-2045.45Show/hide
Query:  MANLHRSKPDWED--RRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDS---------------SSCSSCSSPNPFGHHPRKPNLMMFR
        MANLH+SK D++D  R R    CKRHPKHRQSPGVCSLCLTEKL QI+ +  ++R+ISDS               SSCSSCSSPN    + +     M++
Subjt:  MANLHRSKPDWED--RRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDS---------------SSCSSCSSPNPFGHHPRKPNLMMFR

Query:  KSRSMAVIEPRLIG-----DQKSRLGFWWRLGFLRKRNNNNNNMEFMHSSTTVV
        KSRSMA       G      +KS LGFW R     +R     +   MHS ++ V
Subjt:  KSRSMAVIEPRLIG-----DQKSRLGFWWRLGFLRKRNNNNNNMEFMHSSTTVV

XP_022936383.1 uncharacterized protein LOC111443018 [Cucurbita moschata]4.7e-1949.04Show/hide
Query:  MANLHRSKPDWEDRRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDS-------------SSCSSCSSPN-PFGHHPRKPNLM------
        MAN HRSK D++DRRR    CKRHPKH QSPGVCSLCL EKL QIV S  ++R++SDS             SSCSSCSSPN P+G++  +          
Subjt:  MANLHRSKPDWEDRRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDS-------------SSCSSCSSPN-PFGHHPRKPNLM------

Query:  MFRKSRSMAVIEPRLIGDQKSRLGFWWRLGFLRK--RNNNNNNMEF----MHSSTTV
        +F+KSRSMA   PRL    +S  G    LGF  K  R      MEF    MHS T V
Subjt:  MFRKSRSMAVIEPRLIGDQKSRLGFWWRLGFLRK--RNNNNNNMEF----MHSSTTV

XP_022940504.1 uncharacterized protein LOC111446076 [Cucurbita moschata]3.6e-1945.51Show/hide
Query:  MANLHRSKPDWED--RRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDS---------------SSCSSCSSPNPFGHHPRKPNLMMFR
        MANLH+SK D++D  R R    CKRHPKHRQSPGVCSLCLTEKL QI+ +  ++R+ISDS               SSCSSCSSPN    + +     +++
Subjt:  MANLHRSKPDWED--RRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDS---------------SSCSSCSSPNPFGHHPRKPNLMMFR

Query:  KSRSMAVIEPRLIG-----DQKSRLGFWWRLGFLRKRNNNNNNME--FMHSSTTVV
        KSRSMA       G      +KS LGFW R  FL +       +E   MHS ++ V
Subjt:  KSRSMAVIEPRLIG-----DQKSRLGFWWRLGFLRKRNNNNNNME--FMHSSTTVV

XP_022975755.1 uncharacterized protein LOC111476165 [Cucurbita maxima]5.5e-2047.8Show/hide
Query:  MANLHRSKPDWEDRRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDS-------------SSCSSCSSPN-PFGHHPRKPNLM------
        MAN H+SK D++DRRR    CKRHPKH QSPGVCSLCL EKL QIV S  ++R++SDS             SSCSSCSSPN P+G++  +          
Subjt:  MANLHRSKPDWEDRRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDS-------------SSCSSCSSPN-PFGHHPRKPNLM------

Query:  MFRKSRSMAVIEPRLIGD------QKSRLGFWWRLGFLRKRNNNNNNME--FMHSSTTV
        +F+KSRSMA   PRL  +      + S LGFW R  FLR+        E   MHS T V
Subjt:  MFRKSRSMAVIEPRLIGD------QKSRLGFWWRLGFLRKRNNNNNNME--FMHSSTTV

XP_023524412.1 uncharacterized protein LOC111788316 [Cucurbita pepo subsp. pepo]1.2e-1946.15Show/hide
Query:  MANLHRSKPDWED--RRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDS---------------SSCSSCSSPNPFGHHPRKPNLMMFR
        MANLH+SK D++D  R R    CKRHPKHRQSPGVCSLCLTEKL QI+ +  ++R+ISDS               SSCSSCSSPN    + +     +++
Subjt:  MANLHRSKPDWED--RRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDS---------------SSCSSCSSPNPFGHHPRKPNLMMFR

Query:  KSRSMAVIEPRLIG-----DQKSRLGFWWRLGFLRKRNNNNNNME--FMHSSTTVV
        KSRSMA       G      +KS LGFW R  FL +       +E   MHS T+ V
Subjt:  KSRSMAVIEPRLIG-----DQKSRLGFWWRLGFLRKRNNNNNNME--FMHSSTTVV

TrEMBL top hitse value%identityAlignment
A0A0A0LJL6 Uncharacterized protein6.6e-1137.43Show/hide
Query:  MANLHRSKPDWEDRRRGS---WWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAR-EISDS----------SSCSSC-----SSPNPFG------HHPR
        MAN H SK D + RR  +     C+RHP H QSPGVCSLCLTEKL +I+   A++R +IS+S          SSCSS      SSP  +G      HHPR
Subjt:  MANLHRSKPDWEDRRRGS---WWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAR-EISDS----------SSCSSC-----SSPNPFG------HHPR

Query:  KPNLM------MFRKSRSMAVIEPRLIGDQ--------KSRLGFWWRLGFLRKRNNNNNNMEFMHSSTTVV
        +          +F+KS++MA ++  +   +         + LGFW R    R R       E +  S TVV
Subjt:  KPNLM------MFRKSRSMAVIEPRLIGDQ--------KSRLGFWWRLGFLRKRNNNNNNMEFMHSSTTVV

A0A6J1FD38 uncharacterized protein LOC1114430182.3e-1949.04Show/hide
Query:  MANLHRSKPDWEDRRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDS-------------SSCSSCSSPN-PFGHHPRKPNLM------
        MAN HRSK D++DRRR    CKRHPKH QSPGVCSLCL EKL QIV S  ++R++SDS             SSCSSCSSPN P+G++  +          
Subjt:  MANLHRSKPDWEDRRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDS-------------SSCSSCSSPN-PFGHHPRKPNLM------

Query:  MFRKSRSMAVIEPRLIGDQKSRLGFWWRLGFLRK--RNNNNNNMEF----MHSSTTV
        +F+KSRSMA   PRL    +S  G    LGF  K  R      MEF    MHS T V
Subjt:  MFRKSRSMAVIEPRLIGDQKSRLGFWWRLGFLRK--RNNNNNNMEF----MHSSTTV

A0A6J1FKF2 uncharacterized protein LOC1114460761.7e-1945.51Show/hide
Query:  MANLHRSKPDWED--RRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDS---------------SSCSSCSSPNPFGHHPRKPNLMMFR
        MANLH+SK D++D  R R    CKRHPKHRQSPGVCSLCLTEKL QI+ +  ++R+ISDS               SSCSSCSSPN    + +     +++
Subjt:  MANLHRSKPDWED--RRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDS---------------SSCSSCSSPNPFGHHPRKPNLMMFR

Query:  KSRSMAVIEPRLIG-----DQKSRLGFWWRLGFLRKRNNNNNNME--FMHSSTTVV
        KSRSMA       G      +KS LGFW R  FL +       +E   MHS ++ V
Subjt:  KSRSMAVIEPRLIG-----DQKSRLGFWWRLGFLRKRNNNNNNME--FMHSSTTVV

A0A6J1IHL9 uncharacterized protein LOC1114761652.7e-2047.8Show/hide
Query:  MANLHRSKPDWEDRRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDS-------------SSCSSCSSPN-PFGHHPRKPNLM------
        MAN H+SK D++DRRR    CKRHPKH QSPGVCSLCL EKL QIV S  ++R++SDS             SSCSSCSSPN P+G++  +          
Subjt:  MANLHRSKPDWEDRRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDS-------------SSCSSCSSPN-PFGHHPRKPNLM------

Query:  MFRKSRSMAVIEPRLIGD------QKSRLGFWWRLGFLRKRNNNNNNME--FMHSSTTV
        +F+KSRSMA   PRL  +      + S LGFW R  FLR+        E   MHS T V
Subjt:  MFRKSRSMAVIEPRLIGD------QKSRLGFWWRLGFLRKRNNNNNNME--FMHSSTTV

A0A6J1J366 uncharacterized protein LOC1114809272.3e-1946.45Show/hide
Query:  MANLHRSKPDWED-RRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDS---------------SSCSSCSSPNPFGHHPRKPNLMMFRK
        MANLH+SK D++D RRR    CKRHPKHRQSPGVCSLCLTEKL QI+ +  ++R+ SDS               SSCSSCSSPN    + +     +++K
Subjt:  MANLHRSKPDWED-RRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDS---------------SSCSSCSSPNPFGHHPRKPNLMMFRK

Query:  SRSMA-VIEPRLIGD----QKSRLGFWWRLGFLRKRNNNNNNME--FMHSSTTVV
        SRS+A  +  R   D    +KS LGFW R  FL +       +E   MHS T+ V
Subjt:  SRSMA-VIEPRLIGD----QKSRLGFWWRLGFLRKRNNNNNNME--FMHSSTTVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G22470.1 unknown protein7.5e-0749.06Show/hide
Query:  CKRHPKHRQSPGVCSLCLTEKL-------WQIVHSGAAAREISDSSSCSSCSS
        CK+HPKHRQSPG+CSLCL E L       +    S +++      SSCSS SS
Subjt:  CKRHPKHRQSPGVCSLCLTEKL-------WQIVHSGAAAREISDSSSCSSCSS

AT1G35210.1 unknown protein1.0e-0842.47Show/hide
Query:  EDRRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREIS-----------------DSSSCSSCSSP
        ED+ + + +CK+HPKHRQSPGVCSLCL E+L   + + ++ R  S                  SSS SSC SP
Subjt:  EDRRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREIS-----------------DSSSCSSCSSP

AT1G72240.1 unknown protein3.4e-0737.18Show/hide
Query:  CKRHPKHRQSPGVCSLCLTEKLWQI----------------------VHSGAAAREISDSSSCSSCSSPNPFGHHPRK
        CK+H KHRQSPG+CSLCLTE+L ++                        S ++      SSS SSCSSP  + +  +K
Subjt:  CKRHPKHRQSPGVCSLCLTEKLWQI----------------------VHSGAAAREISDSSSCSSCSSPNPFGHHPRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAATCTCCACAGATCGAAGCCCGATTGGGAGGACCGTCGCCGCGGCTCGTGGTGGTGCAAACGGCACCCGAAGCACCGGCAATCTCCGGGCGTGTGCTCCCTCTG
CTTGACCGAAAAGCTGTGGCAAATAGTCCACTCCGGTGCGGCGGCGCGTGAGATCTCCGATTCCTCCTCCTGTTCTTCCTGTTCCTCGCCGAATCCTTTTGGTCATCATC
CTCGCAAGCCCAATTTGATGATGTTTAGAAAGAGTAGATCTATGGCGGTTATTGAGCCGAGATTGATTGGAGATCAGAAGAGTAGGTTAGGGTTTTGGTGGAGGTTAGGG
TTTTTGAGGAAGAGGAATAATAATAATAATAATATGGAATTCATGCACTCCAGTACTACTGTTGTGCATGCCGCCTGA
mRNA sequenceShow/hide mRNA sequence
CACAGAAGTTCCAAAAATGGCGAATCTCCACAGATCGAAGCCCGATTGGGAGGACCGTCGCCGCGGCTCGTGGTGGTGCAAACGGCACCCGAAGCACCGGCAATCTCCGG
GCGTGTGCTCCCTCTGCTTGACCGAAAAGCTGTGGCAAATAGTCCACTCCGGTGCGGCGGCGCGTGAGATCTCCGATTCCTCCTCCTGTTCTTCCTGTTCCTCGCCGAAT
CCTTTTGGTCATCATCCTCGCAAGCCCAATTTGATGATGTTTAGAAAGAGTAGATCTATGGCGGTTATTGAGCCGAGATTGATTGGAGATCAGAAGAGTAGGTTAGGGTT
TTGGTGGAGGTTAGGGTTTTTGAGGAAGAGGAATAATAATAATAATAATATGGAATTCATGCACTCCAGTACTACTGTTGTGCATGCCGCCTGATCTCTTCAAGATTCCC
CAACATACCCTTATTTCTTCATTCTTTTTTCTTTGTAATTTTTATCTATTCATTAAGGTTTGTGTAAA
Protein sequenceShow/hide protein sequence
MANLHRSKPDWEDRRRGSWWCKRHPKHRQSPGVCSLCLTEKLWQIVHSGAAAREISDSSSCSSCSSPNPFGHHPRKPNLMMFRKSRSMAVIEPRLIGDQKSRLGFWWRLG
FLRKRNNNNNNMEFMHSSTTVVHAA