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Sed0003541 (gene) of Chayote v1 genome

Gene IDSed0003541
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan peptide 23-like
Genome locationLG09:37853381..37853572
RNA-Seq ExpressionSed0003541
SyntenySed0003541
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031225 - anchored component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018419.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]3.9e-1688.89Show/hide
Query:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
        MEMKN ACA LFAAA VTAVVASDES SPAAAPGPSSAASAALPALGSL+GAS VSFVAY+LN
Subjt:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
KAG7025661.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]6.6e-1688.89Show/hide
Query:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
        MEMK  ACAALFAAATVTAVVASDES+SPAAAPGPSSAASAALPALGSLVGAS VSFVA+  N
Subjt:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
XP_022980143.1 arabinogalactan peptide 23-like [Cucurbita maxima]1.1e-1587.3Show/hide
Query:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
        MEMKN AC ALF AA VTAVVASDES SPAAAPGPSSAASAALPALGSL+GAS VSFVAY+LN
Subjt:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
XP_023004714.1 arabinogalactan peptide 23-like [Cucurbita maxima]2.3e-1690.48Show/hide
Query:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
        MEMK  ACAALFAAATVTAVVASDES+SPAAAPGPSSAASAALPALGSLVGAS VSFVAY  N
Subjt:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
XP_023528634.1 arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo]4.6e-1790.48Show/hide
Query:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
        MEMKN ACAALFAAA VTAVVASDES+SPAAAPGPSSAASAALPALGSL+GAS VSFVAY+LN
Subjt:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
TrEMBL top hitse value%identityAlignment
A0A1S3CDX5 arabinogalactan peptide 23-like5.8e-1076.56Show/hide
Query:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFV-AYLLN
        MEMK  ACAALFAAA V+A VA+DES+SPAAAPGPSSAASAALP L    GAS VSFV AY LN
Subjt:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFV-AYLLN
A0A6J1F3F5 arabinogalactan peptide 23-like1.6e-1587.3Show/hide
Query:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
        MEMK  ACAALFAAATVTAVVASDES+SPAAAPGPSSAASA LPALGSLVGAS VS VAY  N
Subjt:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
A0A6J1H8I1 arabinogalactan peptide 23-like7.1e-1687.3Show/hide
Query:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
        MEMK  ACAALFAAAT+TAVVASDES+SPAAAPGPSSAASAALPALGSLVGAS VSFVA+  N
Subjt:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
A0A6J1IYE9 arabinogalactan peptide 23-like5.4e-1687.3Show/hide
Query:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
        MEMKN AC ALF AA VTAVVASDES SPAAAPGPSSAASAALPALGSL+GAS VSFVAY+LN
Subjt:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
A0A6J1KX42 arabinogalactan peptide 23-like1.1e-1690.48Show/hide
Query:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
        MEMK  ACAALFAAATVTAVVASDES+SPAAAPGPSSAASAALPALGSLVGAS VSFVAY  N
Subjt:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 231.1e-1066.67Show/hide
Query:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
        MEMK  AC  LFAAA++TAV+A++E  +P  APGP+SAASAALPALGSLVGAS VS  +Y L+
Subjt:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)1.4e-0860.94Show/hide
Query:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGP-SSAASAALPALGSLVGASFVSFVAYLLN
        MEMK  AC  +FAAA++TAV+A++     A APGP +S AS A+PALGSLVGAS VS  AY LN
Subjt:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGP-SSAASAALPALGSLVGASFVSFVAYLLN
AT3G57690.1 arabinogalactan protein 238.0e-1266.67Show/hide
Query:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN
        MEMK  AC  LFAAA++TAV+A++E  +P  APGP+SAASAALPALGSLVGAS VS  +Y L+
Subjt:  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAAGAACTTTGCCTGCGCCGCCCTCTTCGCTGCCGCTACCGTCACCGCAGTCGTGGCCTCCGATGAGTCCGTCTCCCCGGCTGCAGCACCGGGGCCGAGCAG
CGCTGCCTCCGCTGCTCTTCCCGCCCTTGGATCGCTCGTCGGCGCCTCGTTTGTTTCCTTCGTCGCCTACCTCTTGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGAAGAACTTTGCCTGCGCCGCCCTCTTCGCTGCCGCTACCGTCACCGCAGTCGTGGCCTCCGATGAGTCCGTCTCCCCGGCTGCAGCACCGGGGCCGAGCAG
CGCTGCCTCCGCTGCTCTTCCCGCCCTTGGATCGCTCGTCGGCGCCTCGTTTGTTTCCTTCGTCGCCTACCTCTTGAACTGA
Protein sequenceShow/hide protein sequence
MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN