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Sed0003546 (gene) of Chayote v1 genome

Gene IDSed0003546
OrganismSechium edule (Chayote v1)
DescriptionTranscription initiation factor TFIID subunit 10
Genome locationLG03:10695337..10698895
RNA-Seq ExpressionSed0003546
SyntenySed0003546
Gene Ontology termsGO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0016573 - histone acetylation (biological process)
GO:0000124 - SAGA complex (cellular component)
GO:0005669 - transcription factor TFIID complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
GO:1990841 - promoter-specific chromatin binding (molecular function)
InterPro domainsIPR003923 - Transcription initiation factor TFIID, 23-30kDa subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598532.1 Transcription initiation factor TFIID subunit 10, partial [Cucurbita argyrosperma subsp. sororia]6.5e-6190.44Show/hide
Query:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT
        MN +QQA+  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRL+AVATQKFVADVASDALQHCKAR A VVKDKRDKQQK+KRLILT
Subjt:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT

Query:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE
        M+DLSKALREYGVNVKHQ+Y+ADSPSTGVD TSREE
Subjt:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE

XP_004138687.1 transcription initiation factor TFIID subunit 10 [Cucumis sativus]1.7e-6191.18Show/hide
Query:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT
        MN NQQA+  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRL+AVATQKFVADVASDALQHCKAR A VVKDKRDKQQK+KRLILT
Subjt:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT

Query:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE
        M+DLSKALREYGVNVKHQ+Y+ADSPSTGVD TSREE
Subjt:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE

XP_008445293.1 PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis melo]2.9e-6191.18Show/hide
Query:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT
        MN +QQA+  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRL+AVATQKFVADVASDALQHCKAR A VVKDKRDKQQK+KRLILT
Subjt:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT

Query:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE
        MEDLSKALREYGVNVKHQ+Y+ADSPSTGVD TSREE
Subjt:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE

XP_022132183.1 transcription initiation factor TFIID subunit 10 [Momordica charantia]3.4e-6291.18Show/hide
Query:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT
        MN +QQ +E RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRL+AVATQKFVADVASDALQHCKAR A +VKDKRDKQQK+KRLILT
Subjt:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT

Query:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE
        MEDLSKALREYGVNVKHQ+Y+ADSPSTGVDPTSREE
Subjt:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE

XP_038886703.1 transcription initiation factor TFIID subunit 10 isoform X1 [Benincasa hispida]2.9e-6191.18Show/hide
Query:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT
        MN +QQA+  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRL+AVATQKFVADVASDALQHCKAR A VVKDKRDKQQK+KRLILT
Subjt:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT

Query:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE
        MEDLSKALREYGVNVKHQ+Y+ADSPSTGVD TSREE
Subjt:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE

TrEMBL top hitse value%identityAlignment
A0A0A0LPV6 Transcription initiation factor TFIID subunit 108.3e-6291.18Show/hide
Query:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT
        MN NQQA+  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRL+AVATQKFVADVASDALQHCKAR A VVKDKRDKQQK+KRLILT
Subjt:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT

Query:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE
        M+DLSKALREYGVNVKHQ+Y+ADSPSTGVD TSREE
Subjt:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE

A0A1S3BD75 Transcription initiation factor TFIID subunit 101.4e-6191.18Show/hide
Query:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT
        MN +QQA+  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRL+AVATQKFVADVASDALQHCKAR A VVKDKRDKQQK+KRLILT
Subjt:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT

Query:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE
        MEDLSKALREYGVNVKHQ+Y+ADSPSTGVD TSREE
Subjt:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE

A0A6J1BVJ5 Transcription initiation factor TFIID subunit 101.7e-6291.18Show/hide
Query:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT
        MN +QQ +E RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRL+AVATQKFVADVASDALQHCKAR A +VKDKRDKQQK+KRLILT
Subjt:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT

Query:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE
        MEDLSKALREYGVNVKHQ+Y+ADSPSTGVDPTSREE
Subjt:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE

A0A6J1HHI7 Transcription initiation factor TFIID subunit 103.1e-6190.44Show/hide
Query:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT
        MN +QQA+  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRL+AVATQKFVADVASDALQHCKAR A VVKDKRDKQQK+KRLILT
Subjt:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT

Query:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE
        M+DLSKALREYGVNVKHQ+Y+ADSPSTGVD TSREE
Subjt:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE

A0A6J1KB50 Transcription initiation factor TFIID subunit 103.1e-6190.44Show/hide
Query:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT
        MN +QQA+  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRL+AVATQKFVADVASDALQHCKAR A VVKDKRDKQQK+KRLILT
Subjt:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT

Query:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE
        M+DLSKALREYGVNVKHQ+Y+ADSPSTGVD TSREE
Subjt:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE

SwissProt top hitse value%identityAlignment
O04173 Transcription initiation factor TFIID subunit 101.3e-5983.09Show/hide
Query:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT
        MN  QQ+ E +H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRL+AVATQKFVADVASDALQHCKARPAPVVKDK  KQQK+KRL+LT
Subjt:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT

Query:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE
        MEDLSKALREYGVNVKH +Y+ADSPSTG+DP +R+E
Subjt:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE

Q12962 Transcription initiation factor TFIID subunit 106.2e-2248.08Show/hide
Query:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILTMEDLSKALREYGVNVKH
        L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRLI++A QKF++D+A+DALQHCK +           + K+++  LTMEDL+ AL EYG+NVK 
Subjt:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILTMEDLSKALREYGVNVKH

Query:  QDYY
          Y+
Subjt:  QDYY

Q8K0H5 Transcription initiation factor TFIID subunit 106.2e-2248.08Show/hide
Query:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILTMEDLSKALREYGVNVKH
        L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRLI++A QKF++D+A+DALQHCK +           + K+++  LTMEDL+ AL EYG+NVK 
Subjt:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILTMEDLSKALREYGVNVKH

Query:  QDYY
          Y+
Subjt:  QDYY

Q9U5W9 Transcription initiation factor TFIID subunit 103.5e-1736.84Show/hide
Query:  DDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPV------VKDKRDKQQKEKRLILTMEDLSKA
        +++ + E +  L +Y+PTIPD L  H L  +GF   D +++RL++V+ QKF++D+A+DALQHCK R   +         K  K  K+++  L MEDL  A
Subjt:  DDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPV------VKDKRDKQQKEKRLILTMEDLSKA

Query:  LREYGVNVKHQDYY
        L ++G+ ++   Y+
Subjt:  LREYGVNVKHQDYY

Q9XZT7 Transcription initiation factor TFIID subunit 10b2.6e-2046.15Show/hide
Query:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARP-APVVKDKRDKQQKEKRLILTMEDLSKALREYGVNVK
        LS+F++ L +YTP IPD +  HYL   GFQ  D R++RLI++A QK+++D+  DALQH KAR            + K+++  LTMEDL  AL +YG+NV+
Subjt:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARP-APVVKDKRDKQQKEKRLILTMEDLSKALREYGVNVK

Query:  HQDY
          DY
Subjt:  HQDY

Arabidopsis top hitse value%identityAlignment
AT4G31720.1 TBP-associated factor II 159.0e-6183.09Show/hide
Query:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT
        MN  QQ+ E +H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRL+AVATQKFVADVASDALQHCKARPAPVVKDK  KQQK+KRL+LT
Subjt:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT

Query:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE
        MEDLSKALREYGVNVKH +Y+ADSPSTG+DP +R+E
Subjt:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE

AT4G31720.2 TBP-associated factor II 159.0e-6183.09Show/hide
Query:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT
        MN  QQ+ E +H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRL+AVATQKFVADVASDALQHCKARPAPVVKDK  KQQK+KRL+LT
Subjt:  MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILT

Query:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE
        MEDLSKALREYGVNVKH +Y+ADSPSTG+DP +R+E
Subjt:  MEDLSKALREYGVNVKHQDYYADSPSTGVDPTSREE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAGTAACCAGCAAGCTTCAGAGATCAGGCACGACGATGACGCGGCTCTGTCGGAGTTTCTAGCATCGCTAATGGAGTATACTCCCACTATTCCCGACGAATTGGT
GGAGCATTACTTGGGGAAGAGTGGATTTCAGTGTCCTGATGTTCGATTGATTAGGCTTATTGCTGTTGCCACGCAGAAGTTCGTTGCAGATGTTGCAAGTGATGCTCTCC
AGCATTGTAAGGCAAGACCGGCACCAGTAGTGAAAGACAAAAGGGACAAACAACAAAAGGAGAAGCGCTTAATATTGACCATGGAGGATCTTTCAAAGGCACTTCGTGAG
TATGGCGTGAATGTGAAACATCAAGACTATTATGCTGATAGCCCTTCAACTGGAGTGGATCCTACTTCCAGAGAGGAATGA
mRNA sequenceShow/hide mRNA sequence
ACCAATTCTTGTATTTCGGGTTGGGTAATCGGGTAACTCGGGTTGTCAATTCTCTTCTACACCCCTAAGGCCAATGGTGCTTCTATAAAGATCGCAAATTCTATCATTCG
TTCGCTCTAAATTGGAGTAATTAAAAGGAGGTTTGAGGTGGAAGAGAGGGAAAACGAAGAAGATGAACAGTAACCAGCAAGCTTCAGAGATCAGGCACGACGATGACGCG
GCTCTGTCGGAGTTTCTAGCATCGCTAATGGAGTATACTCCCACTATTCCCGACGAATTGGTGGAGCATTACTTGGGGAAGAGTGGATTTCAGTGTCCTGATGTTCGATT
GATTAGGCTTATTGCTGTTGCCACGCAGAAGTTCGTTGCAGATGTTGCAAGTGATGCTCTCCAGCATTGTAAGGCAAGACCGGCACCAGTAGTGAAAGACAAAAGGGACA
AACAACAAAAGGAGAAGCGCTTAATATTGACCATGGAGGATCTTTCAAAGGCACTTCGTGAGTATGGCGTGAATGTGAAACATCAAGACTATTATGCTGATAGCCCTTCA
ACTGGAGTGGATCCTACTTCCAGAGAGGAATGAGTTGCAGGAACAGGGTTGTTGTAATGTAACTGCTACTCTTCGTTATCTGTCTTCCTTAATATGTACTGATGCATAGT
TCAGCCTTCAGGGTTGAGTACACTCTTGCTTGCTGTTCGTTTCCTGACTCTGCCTTGTAATTATAGCATTGCTTAGAACATCAAATTAAGTTGCTGTGTTTTCCTAGTCA
AATTCTGCCAACTACTCTATAGTGAGGCTAGCCATAGCCTGTCTGAACGGTCATAGCGGTCGGTATGTTTAGCCATGTTCCACCTCTTTTACTAAAACATAACTGTTCAT
AATGTAAAGATGTTAAAACATGGGTTGGGGTCAA
Protein sequenceShow/hide protein sequence
MNSNQQASEIRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLIAVATQKFVADVASDALQHCKARPAPVVKDKRDKQQKEKRLILTMEDLSKALRE
YGVNVKHQDYYADSPSTGVDPTSREE