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Sed0003601 (gene) of Chayote v1 genome

Gene IDSed0003601
OrganismSechium edule (Chayote v1)
Description50S Ribosomal protein
Genome locationLG14:23394597..23397064
RNA-Seq ExpressionSed0003601
SyntenySed0003601
Gene Ontology termsNA
InterPro domainsIPR011719 - Conserved hypothetical protein CHP02058
IPR037103 - Tubulin/FtsZ-like, C-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594554.1 Protein CHUP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]8.3e-1346.49Show/hide
Query:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------
        LLFVEMGVGYDQH       QD+TAAAMRACRD              +P +     +  IKLGVPQSL QSLD+++VKSVFPY  + N EV +       
Subjt:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------

Query:  ---LRQFGSKNNFC
           + + G KN+ C
Subjt:  ---LRQFGSKNNFC

KAG7026530.1 Protein CHUP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]8.3e-1346.49Show/hide
Query:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------
        LLFVEMGVGYDQH       QD+TAAAMRACRD              +P +     +  IKLGVPQSL QSLD+++VKSVFPY  + N EV +       
Subjt:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------

Query:  ---LRQFGSKNNFC
           + + G KN+ C
Subjt:  ---LRQFGSKNNFC

XP_021597604.1 uncharacterized protein LOC110603906 [Manihot esculenta]6.4e-1347.37Show/hide
Query:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------
        LLFVEMGVGYDQH       QD+TAAAMRACRD              +P +   + +  IKLGVP SLHQ LDI+RVKSVFPY  + N EV +       
Subjt:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------

Query:  ---LRQFGSKNNFC
           + + G KN  C
Subjt:  ---LRQFGSKNNFC

XP_023003307.1 uncharacterized protein LOC111496955 [Cucurbita maxima]8.3e-1346.49Show/hide
Query:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------
        LLFVEMGVGYDQH       QD+TAAAMRACRD              +P +     +  IKLGVPQSL QSLD+++VKSVFPY  + N EV +       
Subjt:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------

Query:  ---LRQFGSKNNFC
           + + G KN+ C
Subjt:  ---LRQFGSKNNFC

XP_023517339.1 uncharacterized protein LOC111781127 [Cucurbita pepo subsp. pepo]8.3e-1346.49Show/hide
Query:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------
        LLFVEMGVGYDQH       QD+TAAAMRACRD              +P +     +  IKLGVPQSL QSLD+++VKSVFPY  + N EV +       
Subjt:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------

Query:  ---LRQFGSKNNFC
           + + G KN+ C
Subjt:  ---LRQFGSKNNFC

TrEMBL top hitse value%identityAlignment
A0A067JM48 Uncharacterized protein5.3e-1347.37Show/hide
Query:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------
        LLFVEMGVGYDQH       QD+TAAAMRACRD              +P +   + +  IKLGVP SL QSLDI+RVKSVFPY  + N EV +       
Subjt:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------

Query:  ---LRQFGSKNNFC
           + + G KN  C
Subjt:  ---LRQFGSKNNFC

A0A2C9UAB0 Uncharacterized protein3.1e-1347.37Show/hide
Query:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------
        LLFVEMGVGYDQH       QD+TAAAMRACRD              +P +   + +  IKLGVP SLHQ LDI+RVKSVFPY  + N EV +       
Subjt:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------

Query:  ---LRQFGSKNNFC
           + + G KN  C
Subjt:  ---LRQFGSKNNFC

A0A6J1CKY1 uncharacterized protein LOC111012382 isoform X25.3e-1346.49Show/hide
Query:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------
        LLFVEMGVGYDQH       QD+TAAAMRACRD              +P +   + +  IKLGVPQ+L QSLDI++VKSVFPY  + N EV +       
Subjt:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------

Query:  ---LRQFGSKNNFC
           + + G KN+ C
Subjt:  ---LRQFGSKNNFC

A0A6J1CMQ6 uncharacterized protein LOC111012382 isoform X15.3e-1346.49Show/hide
Query:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------
        LLFVEMGVGYDQH       QD+TAAAMRACRD              +P +   + +  IKLGVPQ+L QSLDI++VKSVFPY  + N EV +       
Subjt:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------

Query:  ---LRQFGSKNNFC
           + + G KN+ C
Subjt:  ---LRQFGSKNNFC

A0A6J1KM31 uncharacterized protein LOC1114969554.0e-1346.49Show/hide
Query:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------
        LLFVEMGVGYDQH       QD+TAAAMRACRD              +P +     +  IKLGVPQSL QSLD+++VKSVFPY  + N EV +       
Subjt:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNS------

Query:  ---LRQFGSKNNFC
           + + G KN+ C
Subjt:  ---LRQFGSKNNFC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G29040.1 unknown protein4.7e-1447.25Show/hide
Query:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEV
        LLFVEMGVGYDQH       QD+T+AAM+AC++              +P +     +  IKLGVP SLHQ LD+ +VKS+FPY  + N EV
Subjt:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEV

AT1G29040.2 unknown protein3.3e-1555.26Show/hide
Query:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRDMPYLPIRFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEV
        LLFVEMGVGYDQH       QD+T+AAM+AC          +  IKLGVP SLHQ LD+ +VKS+FPY  + N EV
Subjt:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRDMPYLPIRFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEV

AT1G29040.3 unknown protein5.2e-0563.64Show/hide
Query:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD
        LLFVEMGVGYDQH       QD+T+AAM+AC++
Subjt:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD

AT1G29040.4 unknown protein4.7e-1447.25Show/hide
Query:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEV
        LLFVEMGVGYDQH       QD+T+AAM+AC++              +P +     +  IKLGVP SLHQ LD+ +VKS+FPY  + N EV
Subjt:  LLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRD--------------MPYLPI-RFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTCCTGCTGTTCGTCGAGATGGGCGTTGGCTATGATCAACACGATTCTGTTTTGTGCCGCAGCCAAGATATGACGGCGGCTGCAATGCGAGCCTGCAGGGATAT
GCCATATCTTCCAATTCGATTCCAGCATTCCATCAAACTTGGAGTTCCGCAGTCTCTTCATCAATCCTTGGATATTCAAAGAGTCAAATCCGTTTTCCCATATGTTGGGT
TGTACAATCAAGAAGTTAATAACTCACTACGTCAATTTGGCTCAAAAAATAATTTCTGCGCAGATTATTCATATTTTATTACATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTCCTGCTGTTCGTCGAGATGGGCGTTGGCTATGATCAACACGATTCTGTTTTGTGCCGCAGCCAAGATATGACGGCGGCTGCAATGCGAGCCTGCAGGGATAT
GCCATATCTTCCAATTCGATTCCAGCATTCCATCAAACTTGGAGTTCCGCAGTCTCTTCATCAATCCTTGGATATTCAAAGAGTCAAATCCGTTTTCCCATATGTTGGGT
TGTACAATCAAGAAGTTAATAACTCACTACGTCAATTTGGCTCAAAAAATAATTTCTGCGCAGATTATTCATATTTTATTACATGA
Protein sequenceShow/hide protein sequence
MKLLLFVEMGVGYDQHDSVLCRSQDMTAAAMRACRDMPYLPIRFQHSIKLGVPQSLHQSLDIQRVKSVFPYVGLYNQEVNNSLRQFGSKNNFCADYSYFIT