CuGenDBv2

Gene ID	Sed0003629
Organism	Sechium edule (Chayote v1)
Description	mediator of RNA polymerase II transcription subunit 15a
Genome location	LG06:4663697..4670515
RNA-Seq Expression	Sed0003629
Synteny	Sed0003629
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0003713 - transcription coactivator activity (molecular function) GO:0031490 - chromatin DNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6571702.1 Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia]

7.2e-24

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Query:  MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT----
        MD+NN     TQ G    E+GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+KIA  FE++IYT +T+ ++YLR ISLKMLTMETKS T    
Subjt:  MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT----

Query:  --------TSNEALNFASQILQPQV
                 SN+ L+ ASQ +QPQV
Subjt:  --------TSNEALNFASQILQPQV

KAG7011427.1 Mediator of RNA polymerase II transcription subunit 15a [Cucurbita argyrosperma subsp. argyrosperma]

7.2e-24

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Query:  MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT----
        MD+NN     TQ G    E+GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+KIA  FE++IYT +T+ ++YLR ISLKMLTMETKS T    
Subjt:  MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT----

Query:  --------TSNEALNFASQILQPQV
                 SN+ L+ ASQ +QPQV
Subjt:  --------TSNEALNFASQILQPQV

XP_022963528.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata]

7.2e-24

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Query:  MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT----
        MD+NN     TQ G    E+GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+KIA  FE++IYT +T+ ++YLR ISLKMLTMETKS T    
Subjt:  MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT----

Query:  --------TSNEALNFASQILQPQV
                 SN+ L+ ASQ +QPQV
Subjt:  --------TSNEALNFASQILQPQV

XP_022967562.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita maxima]

9.4e-24

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Query:  MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT----
        MD+NN     TQ G    E GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+KIA  FE++IYT +T+ ++YLR ISLKMLTMETKS T    
Subjt:  MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT----

Query:  --------TSNEALNFASQILQPQV
                 SN+ L+ ASQ +QPQV
Subjt:  --------TSNEALNFASQILQPQV

XP_023553730.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo]

7.2e-24

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Query:  MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT----
        MD+NN     TQ G    E+GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+KIA  FE++IYT +T+ ++YLR ISLKMLTMETKS T    
Subjt:  MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT----

Query:  --------TSNEALNFASQILQPQV
                 SN+ L+ ASQ +QPQV
Subjt:  --------TSNEALNFASQILQPQV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1HI15 mediator of RNA polymerase II transcription subunit 15a-like isoform X1

3.5e-24

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Query:  MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT----
        MD+NN     TQ G    E+GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+KIA  FE++IYT +T+ ++YLR ISLKMLTMETKS T    
Subjt:  MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT----

Query:  --------TSNEALNFASQILQPQV
                 SN+ L+ ASQ +QPQV
Subjt:  --------TSNEALNFASQILQPQV

A0A6J1HR60 mediator of RNA polymerase II transcription subunit 15a-like isoform X1

4.6e-24

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Query:  MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT----
        MD+NN     TQ G    E GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+KIA  FE++IYT +T+ ++YLR ISLKMLTMETKS T    
Subjt:  MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT----

Query:  --------TSNEALNFASQILQPQV
                 SN+ L+ ASQ +QPQV
Subjt:  --------TSNEALNFASQILQPQV

A0A6J1JK72 mediator of RNA polymerase II transcription subunit 15a-like isoform X3

5.0e-23

60.66

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Query:  MDSNNLGAATTQCGES----GDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHTT---
        MDSNN   A  Q GES    GDWRSQLQPDSR RIVNKIM+TLKR+L +SG E LSELRKIA  FE++IY  +T+ ++YLR ISLKMLTMETKS TT   
Subjt:  MDSNNLGAATTQCGES----GDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHTT---

Query:  ------SNEALNFASQILQPQV
              +N+ L+  SQ +Q QV
Subjt:  ------SNEALNFASQILQPQV

A0A6J1JM75 mediator of RNA polymerase II transcription subunit 15a-like isoform X2

5.0e-23

60.66

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Query:  MDSNNLGAATTQCGES----GDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHTT---
        MDSNN   A  Q GES    GDWRSQLQPDSR RIVNKIM+TLKR+L +SG E LSELRKIA  FE++IY  +T+ ++YLR ISLKMLTMETKS TT   
Subjt:  MDSNNLGAATTQCGES----GDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHTT---

Query:  ------SNEALNFASQILQPQV
              +N+ L+  SQ +Q QV
Subjt:  ------SNEALNFASQILQPQV

A0A6J1JMY4 mediator of RNA polymerase II transcription subunit 15a-like isoform X1

5.0e-23

60.66

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Query:  MDSNNLGAATTQCGES----GDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHTT---
        MDSNN   A  Q GES    GDWRSQLQPDSR RIVNKIM+TLKR+L +SG E LSELRKIA  FE++IY  +T+ ++YLR ISLKMLTMETKS TT   
Subjt:  MDSNNLGAATTQCGES----GDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHTT---

Query:  ------SNEALNFASQILQPQV
              +N+ L+  SQ +Q QV
Subjt:  ------SNEALNFASQILQPQV

SwissProt top hits

e value

%identity

Alignment

F4I171 Mediator of RNA polymerase II transcription subunit 15a

2.8e-18

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Query:  MDSNNLGAATTQ---CGESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTS-TTANYLRTISLKMLTMETKSHTTSNEA
        MD+NN   +        ++GDWR+QL PDSRQ+IVNKIM+TLK++L  SG E ++ELR+IAA FE++I++ +    +YLR IS+KMLTMETKS   +  +
Subjt:  MDSNNLGAATTQ---CGESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTS-TTANYLRTISLKMLTMETKSHTTSNEA

Arabidopsis top hits

e value

%identity

Alignment

AT1G15780.1 unknown protein

2.0e-19

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Query:  MDSNNLGAATTQ---CGESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTS-TTANYLRTISLKMLTMETKSHTTSNEA
        MD+NN   +        ++GDWR+QL PDSRQ+IVNKIM+TLK++L  SG E ++ELR+IAA FE++I++ +    +YLR IS+KMLTMETKS   +  +
Subjt:  MDSNNLGAATTQ---CGESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTS-TTANYLRTISLKMLTMETKSHTTSNEA

AT1G15790.1 unknown protein

2.3e-12

44.79

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Query:  SGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIY-TTSTTANYLRTISLKMLTMETKSHTTSNEALNFASQILQPQVPE
        +GDWR+Q    SR RIVNKIM+T  + L     E  +ELRKIA  FE++++   S    YLR I +KML METKS   +    + A     P VPE
Subjt:  SGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIY-TTSTTANYLRTISLKMLTMETKSHTTSNEALNFASQILQPQVPE

AT1G15790.2 unknown protein

2.3e-12

44.79

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Query:  SGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIY-TTSTTANYLRTISLKMLTMETKSHTTSNEALNFASQILQPQVPE
        +GDWR+Q    SR RIVNKIM+T  + L     E  +ELRKIA  FE++++   S    YLR I +KML METKS   +    + A     P VPE
Subjt:  SGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIY-TTSTTANYLRTISLKMLTMETKSHTTSNEALNFASQILQPQVPE

Sequences

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CDS sequence

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ATGGATTCGAATAATTTGGGAGCTGCTACTACTCAGTGTGGAGAATCTGGCGATTGGAGGTCTCAATTGCAGCCCGATTCTCGGCAGAGAATTGTCAACAAGATAATGGA
TACATTGAAGAGAAACCTTTCTATCTCTGGTGATGAGGAATTGAGTGAGCTGAGAAAAATTGCTGCAACGTTTGAGGACCAGATTTATACTACCTCTACTACGGCAAATT
ATCTAAGGACTATTTCCCTGAAAATGCTGACTATGGAAACCAAATCTCACACCACCAGCAATGAAGCTCTCAATTTTGCATCACAAATCTTGCAGCCTCAAGTTCCGGAG
TATAACAAAGAGACACATGGAGAGTAA

mRNA sequence

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GAAATTCATCTCTACTTAAAAGTGAGTATCAAATTCTCTTTGTGTTTCAAAATCTCATTTGAATTCCTTGATTTTCATAAACATCTGATTCTGAAAAACTCACCTGTGAT
TTTCCGAATCGATTCTGTTGGCCAAATTCTGCCCTAAATCGGTCGAGTTTTATTGCTTCAAATATTTTGAATGGATTCGAATAATTTGGGAGCTGCTACTACTCAGTGTG
GAGAATCTGGCGATTGGAGGTCTCAATTGCAGCCCGATTCTCGGCAGAGAATTGTCAACAAGATAATGGATACATTGAAGAGAAACCTTTCTATCTCTGGTGATGAGGAA
TTGAGTGAGCTGAGAAAAATTGCTGCAACGTTTGAGGACCAGATTTATACTACCTCTACTACGGCAAATTATCTAAGGACTATTTCCCTGAAAATGCTGACTATGGAAAC
CAAATCTCACACCACCAGCAATGAAGCTCTCAATTTTGCATCACAAATCTTGCAGCCTCAAGTTCCGGAGTATAACAAAGAGACACATGGAGAGTAATGGAGCATGAGAA
GAATTAATCATGAAATTAATTAAAGGCCTTATTAGAGACCTCATTAATGAATTGTAATATTGTAGTAGTATTTTTATGATACTTAAATACTTCATGAAGAAGTAATATAT
TATTCGTACTAAGATATGCTAAGTATAAGTTTTTAAGAATATTGTAAGTTTTTTTTATGTGTGGGAGATTCGCCATCTCGAATTGCCTTTGCTATTTTACTTTTATAATT
TTATCTGTCTTACCCTCACAATAATTGATTAATCCCAATCTCACATTTAACAGCCCAATCAATCCAGGTCTTGTGCAGCAGCAACAATAACAATATGCATCAACGCAGCC
TACAATGTCACAGCGGACGAGACGAGCTTGCCTTCGCATCAGCTGCCTCATTGATCGAGGTCGCATGGCCGGTTTTCAGCTTACCTTCCTCACTATGTTAAATATTTGAC
GTCGCCTGTGGTTCGATGGTTTTGACTCGATTCGTCTCGGTCTCCTTTGTTGCTTAAAGCTATTATTCGATTTACACATGAGAATTGCGATCTCTCTTTTTCTTGTTCTT
GCTTTCTATGGTTCTTTGTTGTTTCTTAAGAGTTCAGTTCATGAAGACCACTTAGAAGTTGATTTTCTACAAATTTTCTTGAGATGTAAATATTGTAGGGTCAAGCGGTA
TGTCCCGT

Protein sequence

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MDSNNLGAATTQCGESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTTANYLRTISLKMLTMETKSHTTSNEALNFASQILQPQVPE
YNKETHGE

Sed0003629 (gene) of Chayote v1 genome