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Sed0003691 (gene) of Chayote v1 genome

Gene IDSed0003691
OrganismSechium edule (Chayote v1)
DescriptionRNA polymerase II transcription factor B subunit 5
Genome locationLG03:8205489..8208648
RNA-Seq ExpressionSed0003691
SyntenySed0003691
Gene Ontology termsGO:0006294 - nucleotide-excision repair, preincision complex assembly (biological process)
GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain (biological process)
GO:0000439 - transcription factor TFIIH core complex (cellular component)
GO:0005669 - transcription factor TFIID complex (cellular component)
GO:0005675 - transcription factor TFIIH holo complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009400 - TFIIH subunit TTDA/Tfb5
IPR035935 - TFB5-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596831.1 General transcription and DNA repair factor IIH subunit TFB5, partial [Cucurbita argyrosperma subsp. sororia]3.5e-2191.38Show/hide
Query:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT
        DIPM QFIINYN+SLPAS RFIIHILDNTHMFVQP+VA+MIRNAMSEFRDQNSYEKPT
Subjt:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT

KAG6788425.1 hypothetical protein POTOM_004491 [Populus tomentosa]3.5e-2153.66Show/hide
Query:  MPLKAYSSPVMLRRPRRLPKARGEVTWGFCNSYVSQARNFNHMTAWLHPLTLGGALAIVEVDHMSDIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQP
        MPLK  S P +L     +  ARG    GFC   VS     N +T         G L+ +   + SDIPMAQFIIN N+SLPASQ+FIIH+LD+THMFVQP
Subjt:  MPLKAYSSPVMLRRPRRLPKARGEVTWGFCNSYVSQARNFNHMTAWLHPLTLGGALAIVEVDHMSDIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQP

Query:  HVAEMIRNAMSEFRDQNSYEKPT
        HV++MIR+A+S+FR+QNSYEKP+
Subjt:  HVAEMIRNAMSEFRDQNSYEKPT

KAG7028360.1 RNA polymerase II transcription factor B subunit 5, partial [Cucurbita argyrosperma subsp. argyrosperma]3.5e-2191.38Show/hide
Query:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT
        DIPM QFIINYN+SLPAS RFIIHILDNTHMFVQP+VA+MIRNAMSEFRDQNSYEKPT
Subjt:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT

XP_022943513.1 RNA polymerase II transcription factor B subunit 5 [Cucurbita moschata]3.5e-2191.38Show/hide
Query:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT
        DIPM QFIINYN+SLPAS RFIIHILDNTHMFVQP+VA+MIRNAMSEFRDQNSYEKPT
Subjt:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT

XP_023005607.1 RNA polymerase II transcription factor B subunit 5 isoform X2 [Cucurbita maxima]3.5e-2191.38Show/hide
Query:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT
        DIPM QFIINYN+SLPAS RFIIHILDNTHMFVQP+VA+MIRNAMSEFRDQNSYEKPT
Subjt:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT

TrEMBL top hitse value%identityAlignment
A0A1S3BK87 RNA polymerase II transcription factor B subunit 53.8e-2189.66Show/hide
Query:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT
        D+PMAQFIINYN+SLPAS RFIIHILDNTHMFVQPHVA+MIRNA+SEFRDQ SYEKPT
Subjt:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT

A0A6J1DFN4 RNA polymerase II transcription factor B subunit 56.4e-2189.66Show/hide
Query:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT
        D+PMAQFIINYN+SLPASQRFIIHILDNTHMFVQP VA MI+NA+SEFRDQNSYEKPT
Subjt:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT

A0A6J1FX17 RNA polymerase II transcription factor B subunit 51.7e-2191.38Show/hide
Query:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT
        DIPM QFIINYN+SLPAS RFIIHILDNTHMFVQP+VA+MIRNAMSEFRDQNSYEKPT
Subjt:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT

A0A6J1KTL4 RNA polymerase II transcription factor B subunit 5 isoform X21.7e-2191.38Show/hide
Query:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT
        DIPM QFIINYN+SLPAS RFIIHILDNTHMFVQP+VA+MIRNAMSEFRDQNSYEKPT
Subjt:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT

A0A6J1L2N1 RNA polymerase II transcription factor B subunit 5 isoform X11.7e-2191.38Show/hide
Query:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT
        DIPM QFIINYN+SLPAS RFIIHILDNTHMFVQP+VA+MIRNAMSEFRDQNSYEKPT
Subjt:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT

SwissProt top hitse value%identityAlignment
Q6NNM0 General transcription and DNA repair factor IIH subunit TFB53.1e-2074.14Show/hide
Query:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT
        DIPM QFI+N N+S+P SQ+FIIH+LD+TH+FVQPHV +MIR+A+S+FRDQNSYEKPT
Subjt:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT

Arabidopsis top hitse value%identityAlignment
AT1G12400.1 Nucleotide excision repair, TFIIH, subunit TTDA2.2e-2174.14Show/hide
Query:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT
        DIPM QFI+N N+S+P SQ+FIIH+LD+TH+FVQPHV +MIR+A+S+FRDQNSYEKPT
Subjt:  DIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAMSEFRDQNSYEKPT

AT1G62886.1 Nucleotide excision repair, TFIIH, subunit TTDA9.8e-1462.07Show/hide
Query:  DIPMAQFIINYNSSLPASQRFIIHI--LDNTHMFVQPHVAEMIRNAMSEFRDQNSYEK
        D+PMAQFI + N+SLPASQ+FII +  LD T MFV+P+  EMIR+A+ +FRD+NSY K
Subjt:  DIPMAQFIINYNSSLPASQRFIIHI--LDNTHMFVQPHVAEMIRNAMSEFRDQNSYEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTAAAGGCCTATTCATCTCCTGTGATGTTGAGGCGACCTAGGCGCTTGCCTAAGGCGAGAGGCGAGGTAACCTGGGGTTTTTGCAACTCGTATGTTTCCCAAGC
GAGGAACTTCAATCACATGACTGCCTGGTTGCACCCTTTGACGCTTGGTGGTGCCTTGGCTATTGTTGAAGTTGACCATATGAGTGACATACCTATGGCACAATTCATCA
TCAATTACAACTCTTCCTTGCCTGCATCCCAAAGATTTATAATCCATATTTTGGACAACACCCACATGTTTGTGCAACCACATGTAGCTGAGATGATACGAAATGCCATG
TCGGAATTTCGAGATCAGAATTCTTATGAGAAGCCTACTTGA
mRNA sequenceShow/hide mRNA sequence
GAAAAATTAGAAGAGAGTTTGGAGTTTGGGAGTAGAGAGCCAACCCTTTCTCCACTGCGCATTCTCAGTCTGTACTTTTCTTCGTCTTCAGAAGAAGAAAACACACCGGG
GGTTTCCGTTTTGGTTGCTTGGTGCTTCCCCGTGTGAGGTTGGGCATTTTGACAATCATGGTTAATGCCATTAAAGGCCTATTCATCTCCTGTGATGTTGAGGCGACCTA
GGCGCTTGCCTAAGGCGAGAGGCGAGGTAACCTGGGGTTTTTGCAACTCGTATGTTTCCCAAGCGAGGAACTTCAATCACATGACTGCCTGGTTGCACCCTTTGACGCTT
GGTGGTGCCTTGGCTATTGTTGAAGTTGACCATATGAGTGACATACCTATGGCACAATTCATCATCAATTACAACTCTTCCTTGCCTGCATCCCAAAGATTTATAATCCA
TATTTTGGACAACACCCACATGTTTGTGCAACCACATGTAGCTGAGATGATACGAAATGCCATGTCGGAATTTCGAGATCAGAATTCTTATGAGAAGCCTACTTGAAACA
CACCTCACCCTTTCCCCTCAACTGTGTTGCCAATCAAGGGTTCTGTATAATTGTATTTTTAGGGCTTTCCAAGTTTATATTTTGCTTCTAAAATTTATGCTTCATTTACT
GACTTGAACATCTTGAATGATGGAGATTGTGAACTGAAAGTGGTTCCTAACCTGAAAATATTGTTTTTTTTTCTTAATACTTGGATAAGTTTATTCATATTTCGACTATG
AAACCTTTAGTCACCAAGAAAGTTTGTGATTTGTCTATCAAATTATAGATGCTGATTATCA
Protein sequenceShow/hide protein sequence
MPLKAYSSPVMLRRPRRLPKARGEVTWGFCNSYVSQARNFNHMTAWLHPLTLGGALAIVEVDHMSDIPMAQFIINYNSSLPASQRFIIHILDNTHMFVQPHVAEMIRNAM
SEFRDQNSYEKPT