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Sed0003696 (gene) of Chayote v1 genome

Gene IDSed0003696
OrganismSechium edule (Chayote v1)
DescriptionGibberellin-regulated protein 2
Genome locationLG01:12188492..12189979
RNA-Seq ExpressionSed0003696
SyntenySed0003696
Gene Ontology termsNA
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN64291.1 hypothetical protein Csa_013222 [Cucumis sativus]7.0e-3767.83Show/hide
Query:  MAVR---FLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGT
        MAVR    LLLL +F F CLSQVSS+GY  E     + D + +RG N+R+M  IDCG +C+RRCGAHSRPNRC+RACGTCC RC CVPPGTSGNREMCGT
Subjt:  MAVR---FLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGT

Query:  CYTTMTTHANKLKCP
        CYT+MTTH N+ KCP
Subjt:  CYTTMTTHANKLKCP

XP_008438094.1 PREDICTED: snakin-2-like isoform X1 [Cucumis melo]2.0e-3664.29Show/hide
Query:  MAVR---FLLLLPLFFFHCLS--------QVSSDGYLAEREAMTK---DDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPP
        MAVR    LLLL +F F CLS        Q+SSDGY  +   M +   D+ + +RG N+R+M  IDCG ECKRRCGAHSRPNRC+RACGTCC RC CVPP
Subjt:  MAVR---FLLLLPLFFFHCLS--------QVSSDGYLAEREAMTK---DDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPP

Query:  GTSGNREMCGTCYTTMTTHANKLKCP
        GTSGNREMCGTCYT+MTTH NK KCP
Subjt:  GTSGNREMCGTCYTTMTTHANKLKCP

XP_008438104.1 PREDICTED: snakin-2-like isoform X2 [Cucumis melo]1.3e-3868.64Show/hide
Query:  MAVR---FLLLLPLFFFHCLSQVSSDGYLAEREAMTK---DDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREM
        MAVR    LLLL +F F CLSQ+SSDGY  +   M +   D+ + +RG N+R+M  IDCG ECKRRCGAHSRPNRC+RACGTCC RC CVPPGTSGNREM
Subjt:  MAVR---FLLLLPLFFFHCLSQVSSDGYLAEREAMTK---DDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREM

Query:  CGTCYTTMTTHANKLKCP
        CGTCYT+MTTH NK KCP
Subjt:  CGTCYTTMTTHANKLKCP

XP_023542413.1 snakin-2-like [Cucurbita pepo subsp. pepo]2.0e-3668.14Show/hide
Query:  MAVRFLLLLPLFFFHCLSQVS-SDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCY
        MA RFLLLL +  F CLS  S   G +   +      G  VR PN+R+M  IDCGWECKRRCGAHSRPNRCLR CGTCC RC+CVPPGTSGNREMCGTCY
Subjt:  MAVRFLLLLPLFFFHCLSQVS-SDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCY

Query:  TTMTTHANKLKCP
        T MTTH NK KCP
Subjt:  TTMTTHANKLKCP

XP_038895055.1 snakin-2-like [Benincasa hispida]6.4e-3870.43Show/hide
Query:  MAVR---FLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGT
        MAVR    LLLL LF    LSQVSSDGY  E     + D + +RG N+R+M NI+CGWECKRRCGAHSRPNRC+RACGTCC RC CVP GTSGNREMCGT
Subjt:  MAVR---FLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGT

Query:  CYTTMTTHANKLKCP
        CYT MTTH NK KCP
Subjt:  CYTTMTTHANKLKCP

TrEMBL top hitse value%identityAlignment
A0A0A0LW79 Uncharacterized protein3.4e-3767.83Show/hide
Query:  MAVR---FLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGT
        MAVR    LLLL +F F CLSQVSS+GY  E     + D + +RG N+R+M  IDCG +C+RRCGAHSRPNRC+RACGTCC RC CVPPGTSGNREMCGT
Subjt:  MAVR---FLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGT

Query:  CYTTMTTHANKLKCP
        CYT+MTTH N+ KCP
Subjt:  CYTTMTTHANKLKCP

A0A1S3AVJ9 snakin-2-like isoform X26.2e-3968.64Show/hide
Query:  MAVR---FLLLLPLFFFHCLSQVSSDGYLAEREAMTK---DDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREM
        MAVR    LLLL +F F CLSQ+SSDGY  +   M +   D+ + +RG N+R+M  IDCG ECKRRCGAHSRPNRC+RACGTCC RC CVPPGTSGNREM
Subjt:  MAVR---FLLLLPLFFFHCLSQVSSDGYLAEREAMTK---DDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREM

Query:  CGTCYTTMTTHANKLKCP
        CGTCYT+MTTH NK KCP
Subjt:  CGTCYTTMTTHANKLKCP

A0A1S3AW57 snakin-2-like isoform X19.9e-3764.29Show/hide
Query:  MAVR---FLLLLPLFFFHCLS--------QVSSDGYLAEREAMTK---DDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPP
        MAVR    LLLL +F F CLS        Q+SSDGY  +   M +   D+ + +RG N+R+M  IDCG ECKRRCGAHSRPNRC+RACGTCC RC CVPP
Subjt:  MAVR---FLLLLPLFFFHCLS--------QVSSDGYLAEREAMTK---DDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPP

Query:  GTSGNREMCGTCYTTMTTHANKLKCP
        GTSGNREMCGTCYT+MTTH NK KCP
Subjt:  GTSGNREMCGTCYTTMTTHANKLKCP

A0A1S3UPU0 snakin-21.3e-3365.18Show/hide
Query:  MAVRFLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYT
        MA+R LLLL +    C+++VSSD    + E    DD   VR  N+R+M  IDCG  CKRRCGAHSRPN C RACGTCC RC CVPPGTSGNRE+CGTCYT
Subjt:  MAVRFLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYT

Query:  TMTTHANKLKCP
         MTTHANK KCP
Subjt:  TMTTHANKLKCP

A0A6J1JZU9 snakin-2-like2.4e-3566.67Show/hide
Query:  MAVRFLLLLPLFFFHCLSQVS-----SDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMC
        MA RFLLLL +  F CLS  S     S G+           G  VR PN+R+M  IDCGWECKRRCGAHSRPNRCLR CGTCC RC+CVPPGTSGNREMC
Subjt:  MAVRFLLLLPLFFFHCLSQVS-----SDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMC

Query:  GTCYTTMTTHANKLKCP
        GTCYT MTTH NK KCP
Subjt:  GTCYTTMTTHANKLKCP

SwissProt top hitse value%identityAlignment
F4IQJ4 Gibberellin-regulated protein 113.2e-1659.68Show/hide
Query:  IDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP
        IDC   C+ RC   SRPN C RACGTCC RC+CV PGTSGN + C  CY ++TTH  + KCP
Subjt:  IDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP

P46687 Gibberellin-regulated protein 31.2e-1844.64Show/hide
Query:  MAVRFLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYT
        MA+    L+ L    CL+      + AE   +    GE V        V IDCG  CK RC   SRPN CLRAC +CC+RC+CVPPGT+GN  +C  CY 
Subjt:  MAVRFLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYT

Query:  TMTTHANKLKCP
        ++TT   +LKCP
Subjt:  TMTTHANKLKCP

P46688 Gibberellin-regulated protein 25.8e-1860Show/hide
Query:  MVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP
        +V IDCG  CK RC   SR   CLRAC +CC RC+CVPPGTSGN  +C  CY ++TTH  +LKCP
Subjt:  MVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP

Q93X17 Snakin-22.6e-1866.13Show/hide
Query:  IDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP
        IDCG  C  RC   SRP  C RACGTCC RC+CVPPGTSGN E C  CY ++TTH NK KCP
Subjt:  IDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP

Q9LFR3 Gibberellin-regulated protein 143.4e-1862.9Show/hide
Query:  IDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP
        IDC   C  RCG HSR N C+RAC TCC+RC CVPPGT GN+E CG+CY  M T   K KCP
Subjt:  IDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP

Arabidopsis top hitse value%identityAlignment
AT1G75750.1 GAST1 protein homolog 15.1e-1758.06Show/hide
Query:  IDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP
        IDCG  C  RC    RP  C RACGTCC+RC+CVPPGT GN + C  CY ++TTH  + KCP
Subjt:  IDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP

AT2G18420.1 Gibberellin-regulated family protein2.3e-1759.68Show/hide
Query:  IDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP
        IDC   C+ RC   SRPN C RACGTCC RC+CV PGTSGN + C  CY ++TTH  + KCP
Subjt:  IDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP

AT4G09600.1 GAST1 protein homolog 38.3e-2044.64Show/hide
Query:  MAVRFLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYT
        MA+    L+ L    CL+      + AE   +    GE V        V IDCG  CK RC   SRPN CLRAC +CC+RC+CVPPGT+GN  +C  CY 
Subjt:  MAVRFLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYT

Query:  TMTTHANKLKCP
        ++TT   +LKCP
Subjt:  TMTTHANKLKCP

AT4G09610.1 GAST1 protein homolog 24.1e-1960Show/hide
Query:  MVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP
        +V IDCG  CK RC   SR   CLRAC +CC RC+CVPPGTSGN  +C  CY ++TTH  +LKCP
Subjt:  MVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP

AT5G14920.1 Gibberellin-regulated family protein2.4e-1962.9Show/hide
Query:  IDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP
        IDC   C  RCG HSR N C+RAC TCC+RC CVPPGT GN+E CG+CY  M T   K KCP
Subjt:  IDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLKCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTCGCTTTCTTCTTCTTCTCCCACTTTTCTTTTTCCACTGTCTTTCACAGGTATCTTCAGATGGATACTTAGCAGAACGAGAAGCGATGACTAAAGATGACGG
GGAAGCTGTGAGAGGGCCAAACAAACGGATGATGGTGAACATAGATTGTGGATGGGAGTGCAAGCGGCGGTGTGGGGCGCATTCGAGGCCGAACCGATGCCTAAGGGCGT
GCGGTACGTGCTGCTTCCGCTGTCATTGCGTGCCCCCGGGCACCTCGGGGAACCGTGAGATGTGCGGCACTTGCTACACCACCATGACCACCCATGCTAACAAGCTCAAG
TGCCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGTTCGCTTTCTTCTTCTTCTCCCACTTTTCTTTTTCCACTGTCTTTCACAGGTATCTTCAGATGGATACTTAGCAGAACGAGAAGCGATGACTAAAGATGACGG
GGAAGCTGTGAGAGGGCCAAACAAACGGATGATGGTGAACATAGATTGTGGATGGGAGTGCAAGCGGCGGTGTGGGGCGCATTCGAGGCCGAACCGATGCCTAAGGGCGT
GCGGTACGTGCTGCTTCCGCTGTCATTGCGTGCCCCCGGGCACCTCGGGGAACCGTGAGATGTGCGGCACTTGCTACACCACCATGACCACCCATGCTAACAAGCTCAAG
TGCCCTTAATTCCCCTCCCTAGCTAATTTCTCTCTTTTCCCTTTTTAATTTTGTCCAATCTCAATGCTTTTATTTTATTTTATTTTGGAAAAACAATGCTTCTATTTACG
TTTATGTTCTTTCCAAGTTTGATTATCAAATGTACCAATTATGTTTTCTTCTCCCATTATAAATATTAGCATGTCTGAGCATAGCTTATGAA
Protein sequenceShow/hide protein sequence
MAVRFLLLLPLFFFHCLSQVSSDGYLAEREAMTKDDGEAVRGPNKRMMVNIDCGWECKRRCGAHSRPNRCLRACGTCCFRCHCVPPGTSGNREMCGTCYTTMTTHANKLK
CP