CuGenDBv2

Gene ID	Sed0003751
Organism	Sechium edule (Chayote v1)
Description	RRM domain-containing protein
Genome location	LG07:4942738..4943572
RNA-Seq Expression	Sed0003751
Synteny	Sed0003751
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR035979 - RNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAB2035227.1 hypothetical protein ES319_D04G137800v1 [Gossypium barbadense]

2.4e-04

43.59

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Query:  MAFVSTARRLL----NYGSQFSSIRLCSTFTFTSPKIYICAKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGNCL
        MA  S  RR+        S+F++IRL S  T TSPK++I AK   D ATG++ G G +TY + EEAE A+  M+   L
Subjt:  MAFVSTARRLL----NYGSQFSSIRLCSTFTFTSPKIYICAKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGNCL

KAB2087376.1 hypothetical protein ES319_A04G099600v1 [Gossypium barbadense]

2.8e-05

46.15

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Query:  MAFVSTARRLL----NYGSQFSSIRLCSTFTFTSPKIYICAKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGNCL
        MA  S  RR+     +  SQF+SIRL S  T TSPK++I AK   D ATG++ G G +TY + EEAE A+  M+   L
Subjt:  MAFVSTARRLL----NYGSQFSSIRLCSTFTFTSPKIYICAKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGNCL

TYJ39975.1 hypothetical protein E1A91_A04G106800v1 [Gossypium mustelinum]

3.6e-05

46.15

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Query:  MAFVSTARRLL----NYGSQFSSIRLCSTFTFTSPKIYICAKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGNCL
        MA  S  RR+        SQF+SIRL S  T TSPK++I AK   D ATG++ G G +TY + EEAE A+  M+   L
Subjt:  MAFVSTARRLL----NYGSQFSSIRLCSTFTFTSPKIYICAKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGNCL

TrEMBL top hits

e value

%identity

Alignment

A0A5D2ZLY9 RRM domain-containing protein

1.8e-05

46.15

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Query:  MAFVSTARRLL----NYGSQFSSIRLCSTFTFTSPKIYICAKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGNCL
        MA  S  RR+        SQF+SIRL S  T TSPK++I AK   D ATG++ G G +TY + EEAE A+  M+   L
Subjt:  MAFVSTARRLL----NYGSQFSSIRLCSTFTFTSPKIYICAKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGNCL

A0A5J5RVV2 RRM domain-containing protein

1.1e-04

43.59

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Query:  MAFVSTARRLL----NYGSQFSSIRLCSTFTFTSPKIYICAKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGNCL
        MA  S  RR+        S+F++IRL S  T TSPK++I AK   D ATG++ G G +TY + EEAE A+  M+   L
Subjt:  MAFVSTARRLL----NYGSQFSSIRLCSTFTFTSPKIYICAKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGNCL

A0A5J5W7K4 RRM domain-containing protein

1.4e-05

46.15

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Query:  MAFVSTARRLL----NYGSQFSSIRLCSTFTFTSPKIYICAKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGNCL
        MA  S  RR+     +  SQF+SIRL S  T TSPK++I AK   D ATG++ G G +TY + EEAE A+  M+   L
Subjt:  MAFVSTARRLL----NYGSQFSSIRLCSTFTFTSPKIYICAKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGNCL

A0A7J8YE22 RRM domain-containing protein

1.1e-04

43.59

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Query:  MAFVSTARRLL----NYGSQFSSIRLCSTFTFTSPKIYICAKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGNCL
        MA  S  RR+        S+F++IRL S  T TSPK++I AK   D ATG++ G G +TY + EEAE A+  M+   L
Subjt:  MAFVSTARRLL----NYGSQFSSIRLCSTFTFTSPKIYICAKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGNCL

A0A7J9K7E2 RRM domain-containing protein

1.1e-04

43.59

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Query:  MAFVSTARRLL----NYGSQFSSIRLCSTFTFTSPKIYICAKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGNCL
        MA  S  RR+        S+F++IRL S  T TSPK++I AK   D ATG++ G G +TY + EEAE A+  M+   L
Subjt:  MAFVSTARRLL----NYGSQFSSIRLCSTFTFTSPKIYICAKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGNCL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein

3.3e-04

32.35

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Query:  MAFVSTARRLLNYGSQFSS-----IRLCSTFTFTSPKIYIC-----------------------AKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGN
        MAFVS+ RRL+   S   S     +R CS  T TSP++++                        A+   D  +G++ G G +TYAT E+AE AK  M+  
Subjt:  MAFVSTARRLLNYGSQFSS-----IRLCSTFTFTSPKIYIC-----------------------AKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGN

Query:  CL
         L
Subjt:  CL

Sequences

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CDS sequence

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ATGGCTTTCGTCTCAACTGCAAGGCGCCTTCTTAATTATGGATCGCAGTTTAGTTCCATTCGTCTCTGCTCAACTTTCACTTTCACATCGCCAAAGATCTACATTTGTGC
AAAATTTGAAATCGACGAGGCAACCGGAAAAGCAACCGGTCTCGGCACTATAACCTACGCCACGACCGAAGAGGCCGAGGCAGCGAAAAGAGCAATGAGTGGCAATTGTT
TGTTATGA

mRNA sequence

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Protein sequence

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MAFVSTARRLLNYGSQFSSIRLCSTFTFTSPKIYICAKFEIDEATGKATGLGTITYATTEEAEAAKRAMSGNCLL

Sed0003751 (gene) of Chayote v1 genome