; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0003756 (gene) of Chayote v1 genome

Gene IDSed0003756
OrganismSechium edule (Chayote v1)
DescriptionAlba DNA/RNA-binding protein
Genome locationLG02:50044259..50045174
RNA-Seq ExpressionSed0003756
SyntenySed0003756
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582358.1 hypothetical protein SDJN03_22360, partial [Cucurbita argyrosperma subsp. sororia]4.6e-2452.63Show/hide
Query:  KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSAL
        +SG+VV+E    VKNEIRNE+E +LVVA  GEVK+I+VLTE K      NQIQVSN K PFFYYYNLSK                 R I   NEVELSAL
Subjt:  KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSAL

Query:  GMD---------------------LILSSVSFKNGENDRLILKPKIEIALAN
        GM                      L +SSVS KNGENDRL++KPKIEIAL N
Subjt:  GMD---------------------LILSSVSFKNGENDRLILKPKIEIALAN

KAG7018769.1 hypothetical protein SDJN02_20642 [Cucurbita argyrosperma subsp. argyrosperma]6.0e-2451.95Show/hide
Query:  KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSAL
        +SG+VV+E    VKNEIRNE+E +LVVA  GEVK+I+VLTE K      NQIQVSN K PFFYYYNLSK                 R I   NEVELSAL
Subjt:  KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSAL

Query:  GMD-----------------------LILSSVSFKNGENDRLILKPKIEIALAN
        GM                        L +SSVS KNGENDRL++KPKIEIAL N
Subjt:  GMD-----------------------LILSSVSFKNGENDRLILKPKIEIALAN

XP_022924600.1 uncharacterized protein At2g34160-like [Cucurbita moschata]1.0e-2351.97Show/hide
Query:  KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSAL
        +SG+VV+E    +KNEIRNE+E +LVVA  GEVK+I+VLTE K      NQIQVSN K PFFYYYNLSK                 R I   NEVELSAL
Subjt:  KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSAL

Query:  GMD---------------------LILSSVSFKNGENDRLILKPKIEIALAN
        GM                      L +SSVS KNGENDRL++KPKIEIAL N
Subjt:  GMD---------------------LILSSVSFKNGENDRLILKPKIEIALAN

XP_022980835.1 uncharacterized protein At2g34160-like [Cucurbita maxima]5.1e-2351.97Show/hide
Query:  KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSAL
        +SG+VV+E    VKNEIRNE+E +LVVA   EVK+I+VLTE K      NQIQVSN K PFFYYYNLSK                 R I   NEVELSAL
Subjt:  KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSAL

Query:  GMD---------------------LILSSVSFKNGENDRLILKPKIEIALAN
        GM                      L +SSVS KNGENDRL++KPKIEIAL N
Subjt:  GMD---------------------LILSSVSFKNGENDRLILKPKIEIALAN

XP_038877187.1 uncharacterized protein At2g34160-like [Benincasa hispida]4.6e-2451.97Show/hide
Query:  KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSAL
        +SG+VV+EG   VKNEIR+E+E +LVVA  GEVK+I+VLTEFK      NQIQVSN K PFFYYYNLSK                 R I   NEVELSAL
Subjt:  KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSAL

Query:  GM---------------------DLILSSVSFKNGENDRLILKPKIEIALAN
        GM                      L +SSVS K GEND+L++KPKIEIAL N
Subjt:  GM---------------------DLILSSVSFKNGENDRLILKPKIEIALAN

TrEMBL top hitse value%identityAlignment
A0A0A0L8F8 Alba domain-containing protein3.2e-2350.99Show/hide
Query:  SGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALG
        SG+VV+E    VKNEIRNE+E +LV A   EVK+I+VLTEFK      NQIQVSN K PFFYYYNLSK                 R I   NEVELSALG
Subjt:  SGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALG

Query:  M---------------------DLILSSVSFKNGENDRLILKPKIEIALAN
        M                      L++SSVS KNGEN +L++KPKIEIAL N
Subjt:  M---------------------DLILSSVSFKNGENDRLILKPKIEIALAN

A0A5D3CZ81 Alba DNA/RNA-binding protein2.1e-2250.33Show/hide
Query:  SGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALG
        SG VV+E    VKNEI+NE+E +LV A   EVK+I+VLTEFK      NQIQVSN K PFFYYYNLSK                 R I   NEVELSALG
Subjt:  SGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALG

Query:  M---------------------DLILSSVSFKNGENDRLILKPKIEIALAN
        M                     +L +SSVS KNGEN +L++KPKIEIAL N
Subjt:  M---------------------DLILSSVSFKNGENDRLILKPKIEIALAN

A0A6J1D0Y9 uncharacterized protein At2g34160-like9.4e-2351.97Show/hide
Query:  KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSAL
        +S IVV+E    VK+EIRNE+E +LVVA  G+VK+I+VLTEFK      NQIQVSN K PFFYYYNLSK                 R I   NEVELSAL
Subjt:  KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSAL

Query:  GM---------------------DLILSSVSFKNGENDRLILKPKIEIALAN
        GM                     +L +SSVS KNGENDRL++KPKIEIAL N
Subjt:  GM---------------------DLILSSVSFKNGENDRLILKPKIEIALAN

A0A6J1EFH1 uncharacterized protein At2g34160-like5.0e-2451.97Show/hide
Query:  KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSAL
        +SG+VV+E    +KNEIRNE+E +LVVA  GEVK+I+VLTE K      NQIQVSN K PFFYYYNLSK                 R I   NEVELSAL
Subjt:  KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSAL

Query:  GMD---------------------LILSSVSFKNGENDRLILKPKIEIALAN
        GM                      L +SSVS KNGENDRL++KPKIEIAL N
Subjt:  GMD---------------------LILSSVSFKNGENDRLILKPKIEIALAN

A0A6J1IXN8 uncharacterized protein At2g34160-like2.5e-2351.97Show/hide
Query:  KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSAL
        +SG+VV+E    VKNEIRNE+E +LVVA   EVK+I+VLTE K      NQIQVSN K PFFYYYNLSK                 R I   NEVELSAL
Subjt:  KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSAL

Query:  GMD---------------------LILSSVSFKNGENDRLILKPKIEIALAN
        GM                      L +SSVS KNGENDRL++KPKIEIAL N
Subjt:  GMD---------------------LILSSVSFKNGENDRLILKPKIEIALAN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G04620.1 Alba DNA/RNA-binding protein5.7e-0432.69Show/hide
Query:  NNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALGM---------------------DLILSSVSFKNGENDRLILKPKI
        +  N+IQVSN K P F+Y NL+K                 R I   NEVELSALGM                      ++ S+V  K+    +++ K KI
Subjt:  NNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALGM---------------------DLILSSVSFKNGENDRLILKPKI

Query:  EIAL
        EI L
Subjt:  EIAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAATCCGGCATAGTCGTCGCAGAAGGCTGCATTCGGGTCAAGAATGAAATCCGCAATGAGGACGAAACGGTGCTCGTGGTTGCCCTACATGGTGAAGTTAAGGA
CATATCTGTTTTGACCGAGTTTAAGAACAACAACAACAACAACAACCAAATTCAGGTCTCCAATTTCAAGAACCCATTCTTTTACTACTACAATCTTTCTAAGGTGTTTA
GGCCAAAATCAAAATCTTCATTGATTTGGTGCTTCATTTGTTGCAGAGGTATATTAAGCAGTAACGAAGTTGAGCTCTCTGCCTTGGGAATGGACTTGATTTTATCTTCT
GTCAGTTTCAAGAATGGTGAAAATGATAGGCTGATTTTGAAACCAAAGATTGAGATAGCACTGGCGAATGGGCGAGTGAATTGCAGGTTCTTTGTAATTGAACTGCCAAC
TTCAAATTACATACATAATTGGATAAACAGACTGATGAAAATGAAAATCTGGAACTTTGCTATTTGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAATCCGGCATAGTCGTCGCAGAAGGCTGCATTCGGGTCAAGAATGAAATCCGCAATGAGGACGAAACGGTGCTCGTGGTTGCCCTACATGGTGAAGTTAAGGA
CATATCTGTTTTGACCGAGTTTAAGAACAACAACAACAACAACAACCAAATTCAGGTCTCCAATTTCAAGAACCCATTCTTTTACTACTACAATCTTTCTAAGGTGTTTA
GGCCAAAATCAAAATCTTCATTGATTTGGTGCTTCATTTGTTGCAGAGGTATATTAAGCAGTAACGAAGTTGAGCTCTCTGCCTTGGGAATGGACTTGATTTTATCTTCT
GTCAGTTTCAAGAATGGTGAAAATGATAGGCTGATTTTGAAACCAAAGATTGAGATAGCACTGGCGAATGGGCGAGTGAATTGCAGGTTCTTTGTAATTGAACTGCCAAC
TTCAAATTACATACATAATTGGATAAACAGACTGATGAAAATGAAAATCTGGAACTTTGCTATTTGCTAG
Protein sequenceShow/hide protein sequence
MAKSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALGMDLILSS
VSFKNGENDRLILKPKIEIALANGRVNCRFFVIELPTSNYIHNWINRLMKMKIWNFAIC