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Sed0003797 (gene) of Chayote v1 genome

Gene IDSed0003797
OrganismSechium edule (Chayote v1)
DescriptionEukaryotic translation initiation factor 4C
Genome locationLG04:43024802..43025224
RNA-Seq ExpressionSed0003797
SyntenySed0003797
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsIPR001253 - Translation initiation factor 1A (eIF-1A)


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABK27099.1 unknown [Picea sitchensis]1.3e-1849.63Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP
        NRKR KNEADD K ELVFKEDGQ++                                      G  ILVGLRD QDDKA VI KYM +         ELP
Subjt:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP

Query:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI
        EN RL+EGI GG D+DD GGGD YIEFEDED D I
Subjt:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI

MBA0670531.1 hypothetical protein [Gossypium klotzschianum]4.7e-2161.54Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDW-------GYHILVGLRDCQDDKAYVIHKYMSN---------ELPENTRLDEGIIGGRDDDDVGGGDAYIEFEDED
        NRKR KNEADD K EL+FKEDGQ++       G  ILVGLRD QDDKA VI KYM +         ELPE TRL+EG+ GG D+DD G GD YIEFEDED
Subjt:  NRKRVKNEADDVKSELVFKEDGQDW-------GYHILVGLRDCQDDKAYVIHKYMSN---------ELPENTRLDEGIIGGRDDDDVGGGDAYIEFEDED

Query:  FDMI
         D I
Subjt:  FDMI

XP_004144524.1 eukaryotic translation initiation factor 1A [Cucumis sativus]6.2e-2151.85Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP
        NRKR KNEADD K ELVFKEDGQ++                                      G  ILVGLRD QDDKA VI KYM +         ELP
Subjt:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP

Query:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI
        ENTRL+EGI+GG DDDD GGGDAYIEFEDED D I
Subjt:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI

XP_022135622.1 eukaryotic translation initiation factor 1A-like [Momordica charantia]1.8e-2051.11Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMS---------NELP
        NRKR KNEADD K ELVFKEDGQ++                                      G  ILVGLR+ QDDKA VI KYM          +ELP
Subjt:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMS---------NELP

Query:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI
        ENTRL+EGI+GG DDDD GGGDAYIEFEDED D I
Subjt:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI

XP_022930658.1 eukaryotic translation initiation factor 1A-like [Cucurbita moschata]6.2e-2151.85Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP
        NRKR KNEADD K ELVFKEDGQ++                                      G  ILVGLRD QDDKA VI KYM +         ELP
Subjt:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP

Query:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI
        ENTRL+EGI+GG DDDD GGGDAYIEFEDED D I
Subjt:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI

TrEMBL top hitse value%identityAlignment
A0A0A0K1Y5 Eukaryotic translation initiation factor 4C3.0e-2151.85Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP
        NRKR KNEADD K ELVFKEDGQ++                                      G  ILVGLRD QDDKA VI KYM +         ELP
Subjt:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP

Query:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI
        ENTRL+EGI+GG DDDD GGGDAYIEFEDED D I
Subjt:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI

A0A5A7UZV0 Eukaryotic translation initiation factor 4C3.0e-2151.85Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP
        NRKR KNEADD K ELVFKEDGQ++                                      G  ILVGLRD QDDKA VI KYM +         ELP
Subjt:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP

Query:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI
        ENTRL+EGI+GG DDDD GGGDAYIEFEDED D I
Subjt:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI

A0A6J1EVW9 Eukaryotic translation initiation factor 4C3.0e-2151.85Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP
        NRKR KNEADD K ELVFKEDGQ++                                      G  ILVGLRD QDDKA VI KYM +         ELP
Subjt:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP

Query:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI
        ENTRL+EGI+GG DDDD GGGDAYIEFEDED D I
Subjt:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI

A0A6J1JL52 Eukaryotic translation initiation factor 4C3.0e-2151.85Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP
        NRKR KNEADD K ELVFKEDGQ++                                      G  ILVGLRD QDDKA VI KYM +         ELP
Subjt:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP

Query:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI
        ENTRL+EGI+GG DDDD GGGDAYIEFEDED D I
Subjt:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI

A0A7J8W656 S1-like domain-containing protein2.3e-2161.54Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDW-------GYHILVGLRDCQDDKAYVIHKYMSN---------ELPENTRLDEGIIGGRDDDDVGGGDAYIEFEDED
        NRKR KNEADD K EL+FKEDGQ++       G  ILVGLRD QDDKA VI KYM +         ELPE TRL+EG+ GG D+DD G GD YIEFEDED
Subjt:  NRKRVKNEADDVKSELVFKEDGQDW-------GYHILVGLRDCQDDKAYVIHKYMSN---------ELPENTRLDEGIIGGRDDDDVGGGDAYIEFEDED

Query:  FDMI
         D I
Subjt:  FDMI

SwissProt top hitse value%identityAlignment
P47813 Eukaryotic translation initiation factor 1A, X-chromosomal4.5e-0634.56Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDWGY--------------------------------------HILVGLRDCQDDKAYVIHKYMSN---------ELP
        NR+R KNE +  K ELVFKEDGQ++                                         ILVGLRD QD+KA VI KY ++         ELP
Subjt:  NRKRVKNEADDVKSELVFKEDGQDWGY--------------------------------------HILVGLRDCQDDKAYVIHKYMSN---------ELP

Query:  ENTRLDE-GIIGGRDDDDVGGGDAYIEFEDEDFDMI
        E+ +++E    G  DDD++   D  I  +DED D I
Subjt:  ENTRLDE-GIIGGRDDDDVGGGDAYIEFEDEDFDMI

P47815 Eukaryotic translation initiation factor 1A2.2e-1341.91Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP
        NRKR KNEADD K ELVFKEDGQ++                                      G  +LVGLRD QDDKA VI KYM++         ELP
Subjt:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP

Query:  ENTRLDEGIIGGRDDDDVGGGDA-YIEFEDEDFDMI
        +  RL+EG+    D  + G GD+ YI+FEDED D I
Subjt:  ENTRLDEGIIGGRDDDDVGGGDA-YIEFEDEDFDMI

P56331 Eukaryotic translation initiation factor 1A2.4e-1543.7Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP
        NRKR KNEADD K ELVFKEDGQ++                                      G  ILVGLRD QDDKA VI K M +         ELP
Subjt:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP

Query:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI
        +NTRL+EGI  G  D+++   + YIEFEDED D I
Subjt:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI

Q6GVM3 Eukaryotic translation initiation factor 1A, Y-chromosomal3.4e-0635.29Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDWGY--------------------------------------HILVGLRDCQDDKAYVIHKYMSN---------ELP
        NR+R KNE +  K ELVFKEDGQ++                                         ILVGLRD QD+KA VI KY ++         ELP
Subjt:  NRKRVKNEADDVKSELVFKEDGQDWGY--------------------------------------HILVGLRDCQDDKAYVIHKYMSN---------ELP

Query:  ENTRLDE-GIIGGRDDDDVGGGDAYIEFEDEDFDMI
        E+ +++E    G  DDD+V   D  I  +DED D I
Subjt:  ENTRLDE-GIIGGRDDDDVGGGDAYIEFEDEDFDMI

Q8BMJ3 Eukaryotic translation initiation factor 1A, X-chromosomal4.5e-0634.56Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDWGY--------------------------------------HILVGLRDCQDDKAYVIHKYMSN---------ELP
        NR+R KNE +  K ELVFKEDGQ++                                         ILVGLRD QD+KA VI KY ++         ELP
Subjt:  NRKRVKNEADDVKSELVFKEDGQDWGY--------------------------------------HILVGLRDCQDDKAYVIHKYMSN---------ELP

Query:  ENTRLDE-GIIGGRDDDDVGGGDAYIEFEDEDFDMI
        E+ +++E    G  DDD++   D  I  +DED D I
Subjt:  ENTRLDE-GIIGGRDDDDVGGGDAYIEFEDEDFDMI

Arabidopsis top hitse value%identityAlignment
AT2G04520.1 Nucleic acid-binding, OB-fold-like protein8.6e-2145.93Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP
        NRKR KNEADD K EL+FKEDGQ++                                      G  +LVGLRD QDDKA VI KYMS+         ELP
Subjt:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP

Query:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI
        ENTRL+EGI+G  +DDD    D Y+EFEDED D I
Subjt:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI

AT5G35680.1 Nucleic acid-binding, OB-fold-like protein3.9e-2148.15Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP
        NRKR KNEADD K EL+FKEDGQ++                                      G  ILVGLRD QDDKA VI KYMS+         ELP
Subjt:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP

Query:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI
        ENTRL+EGI+G  DDDD   G+ YIEFEDED D I
Subjt:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI

AT5G35680.2 Nucleic acid-binding, OB-fold-like protein3.9e-2148.15Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP
        NRKR KNEADD K EL+FKEDGQ++                                      G  ILVGLRD QDDKA VI KYMS+         ELP
Subjt:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP

Query:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI
        ENTRL+EGI+G  DDDD   G+ YIEFEDED D I
Subjt:  ENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI

AT5G35680.3 Nucleic acid-binding, OB-fold-like protein6.4e-1646.15Show/hide
Query:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP
        NRKR KNEADD K EL+FKEDGQ++                                      G  ILVGLRD QDDKA VI KYMS+         ELP
Subjt:  NRKRVKNEADDVKSELVFKEDGQDW--------------------------------------GYHILVGLRDCQDDKAYVIHKYMSN---------ELP

Query:  ENTRLDEGIIGGRDDDD
        ENTRL+EGI+G  DDDD
Subjt:  ENTRLDEGIIGGRDDDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCATTATCTTGAGAGAATAATCTGCAATAGGAAGAGGGTTAAGAACGAGGCAGATGATGTGAAGAGTGAGCTTGTGTTTAAGGAAGATGGGCAGGACTGGGGATA
TCATATACTTGTTGGTCTTCGTGACTGTCAAGATGACAAAGCTTACGTGATTCACAAATACATGTCCAATGAGCTACCTGAGAATACGCGTCTTGACGAAGGTATCATTG
GCGGTAGAGATGACGACGATGTAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACTTTGATATGATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCCATTATCTTGAGAGAATAATCTGCAATAGGAAGAGGGTTAAGAACGAGGCAGATGATGTGAAGAGTGAGCTTGTGTTTAAGGAAGATGGGCAGGACTGGGGATA
TCATATACTTGTTGGTCTTCGTGACTGTCAAGATGACAAAGCTTACGTGATTCACAAATACATGTCCAATGAGCTACCTGAGAATACGCGTCTTGACGAAGGTATCATTG
GCGGTAGAGATGACGACGATGTAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACTTTGATATGATCTAG
Protein sequenceShow/hide protein sequence
MFHYLERIICNRKRVKNEADDVKSELVFKEDGQDWGYHILVGLRDCQDDKAYVIHKYMSNELPENTRLDEGIIGGRDDDDVGGGDAYIEFEDEDFDMI