; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0003807 (gene) of Chayote v1 genome

Gene IDSed0003807
OrganismSechium edule (Chayote v1)
Descriptionvegetative cell wall protein gp1-like
Genome locationLG14:19297949..19298786
RNA-Seq ExpressionSed0003807
SyntenySed0003807
Gene Ontology termsNA
InterPro domainsIPR044959 - Classical arabinogalactan protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036330.1 hypothetical protein E6C27_scaffold18G001290 [Cucumis melo var. makuwa]1.8e-3364.88Show/hide
Query:  MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPA----ENRAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTP----
        MG SG RFVVIFAL+T  C+AQAP PAP  G  Q + P  AT APSP VLPP+     NRAPSPSP P +P+P P + SPAP   AP+PA  APTP    
Subjt:  MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPA----ENRAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTP----

Query:  SPTPAGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA
        +PTP+GGPV PPIASPPSPTG+ VPSPA    P+GP ADNPA AASHIGGAA  GIA+AGTLF+VIL+
Subjt:  SPTPAGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA

XP_022950235.1 vegetative cell wall protein gp1-like [Cucurbita moschata]6.3e-2353.55Show/hide
Query:  MGISGFRFVVIFALMTASCLAQAPA--PAPVQGPSQAVPPAPATSAPSPSVLPPAEN----RAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSP
        MG SG R VVIFALM A C AQAPA  PAP     + +PP PAT APSP   PP+ +    RAPSPSP  A+P+P   + SPAP+A AP+P T APTPSP
Subjt:  MGISGFRFVVIFALMTASCLAQAPA--PAPVQGPSQAVPPAPATSAPSPSVLPPAEN----RAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSP

Query:  -----------------TPAGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA
                         +PAG PV PPIASPPSP+     +  P+P PE PAAD+PA AASHIGGA   GIA+AGTL ++++A
Subjt:  -----------------TPAGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA

XP_022978568.1 vegetative cell wall protein gp1-like [Cucurbita maxima]1.4e-2253.59Show/hide
Query:  MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPAEN----RAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSP--
        MG SG R VVIFALM A C AQAPAPA      + +PP PAT APSP   PP+ +    RAPSPSP  A+P+P   + SPAP+A AP+P T APTPSP  
Subjt:  MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPAEN----RAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSP--

Query:  ---------------TPAGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA
                       +PAG PV PPIASPPSP+     +  P+P PE PAAD+PA AASHIGGA   GIA+AGTL ++++A
Subjt:  ---------------TPAGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA

XP_023544207.1 vegetative cell wall protein gp1-like [Cucurbita pepo subsp. pepo]7.5e-2454.1Show/hide
Query:  MGISGFRFVVIFALMTASCLAQAPA--PAPVQGPSQAVPPAPATSAPSPSVLPPAEN----RAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSP
        MG SG R VVIFALM A C+AQAPA  PAP     + +PP PAT APSP   PPA +    RAPSPSP  A+P+P   + SPAP+A AP+P T APTPSP
Subjt:  MGISGFRFVVIFALMTASCLAQAPA--PAPVQGPSQAVPPAPATSAPSPSVLPPAEN----RAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSP

Query:  -----------------TPAGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA
                         +PAG PV PPIASPPSP+     +  P+P PE PAAD+PA AASHIGGA   GIA+AGTL ++++A
Subjt:  -----------------TPAGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA

XP_038881138.1 vegetative cell wall protein gp1-like [Benincasa hispida]1.9e-3568.45Show/hide
Query:  MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPA----ENRAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSP--
        MG SG R+VVIFAL+T  C+AQAPAPAP  G SQ +PP P T APSP V PP+     NRAPS SPAPA+P+P P + SPAPA  AP+PAT+APTP+P  
Subjt:  MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPA----ENRAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSP--

Query:  --TPAGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA
          TP+GGPV PPIASPPSPTG+ VPS A    P+ PAADNPA AASHIGG AAFGIAVAGTLF+VILA
Subjt:  --TPAGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA

TrEMBL top hitse value%identityAlignment
A0A0A0KG74 Uncharacterized protein3.6e-3264.63Show/hide
Query:  MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPA----ENRAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSPTP
        MG SG RFV+IFAL+T  C+AQAPAPAP  G  Q + P  AT APSP VLPP+     NRAPSPSP P +P+P P + SPAPA  AP+P    P  +PTP
Subjt:  MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPA----ENRAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSPTP

Query:  AGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA
        +GGPV PPIASPPSPTG+ VPSPA    P+GPAADNPA A SHIGGAA  GIA+AGTLF VIL+
Subjt:  AGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA

A0A5D3CNQ6 Uncharacterized protein8.6e-3464.88Show/hide
Query:  MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPA----ENRAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTP----
        MG SG RFVVIFAL+T  C+AQAP PAP  G  Q + P  AT APSP VLPP+     NRAPSPSP P +P+P P + SPAP   AP+PA  APTP    
Subjt:  MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPA----ENRAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTP----

Query:  SPTPAGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA
        +PTP+GGPV PPIASPPSPTG+ VPSPA    P+GP ADNPA AASHIGGAA  GIA+AGTLF+VIL+
Subjt:  SPTPAGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA

A0A6J1GF55 vegetative cell wall protein gp1-like3.1e-2353.55Show/hide
Query:  MGISGFRFVVIFALMTASCLAQAPA--PAPVQGPSQAVPPAPATSAPSPSVLPPAEN----RAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSP
        MG SG R VVIFALM A C AQAPA  PAP     + +PP PAT APSP   PP+ +    RAPSPSP  A+P+P   + SPAP+A AP+P T APTPSP
Subjt:  MGISGFRFVVIFALMTASCLAQAPA--PAPVQGPSQAVPPAPATSAPSPSVLPPAEN----RAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSP

Query:  -----------------TPAGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA
                         +PAG PV PPIASPPSP+     +  P+P PE PAAD+PA AASHIGGA   GIA+AGTL ++++A
Subjt:  -----------------TPAGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA

A0A6J1ITI1 vegetative cell wall protein gp1-like6.8e-2353.59Show/hide
Query:  MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPAEN----RAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSP--
        MG SG R VVIFALM A C AQAPAPA      + +PP PAT APSP   PP+ +    RAPSPSP  A+P+P   + SPAP+A AP+P T APTPSP  
Subjt:  MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPAEN----RAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSP--

Query:  ---------------TPAGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA
                       +PAG PV PPIASPPSP+     +  P+P PE PAAD+PA AASHIGGA   GIA+AGTL ++++A
Subjt:  ---------------TPAGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA

A0A6J1KP28 classical arabinogalactan protein 4-like4.7e-1647.56Show/hide
Query:  MGISGFRFVVIFALMTASCLAQA----PAPAPVQGPSQAVPPAPATSAPSPSVLPPAENRAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSPTP
        MG SG RF+++ AL+ A+C+AQA    PAPAP QGPSQ +PPAPAT               P+PS +PA+P P P + +P PA           TPS +P
Subjt:  MGISGFRFVVIFALMTASCLAQA----PAPAPVQGPSQAVPPAPATSAPSPSVLPPAENRAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSPTP

Query:  AGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA
        AGGPV P +ASPPS              PEGP ADNP  AAS IG A   G+AVAG+L +V+LA
Subjt:  AGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G40090.1 arabinogalactan protein 34.1e-0437.04Show/hide
Query:  MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPAENRAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSPTPAGGP
        M +   + ++   L  ASCLAQAPAPAP+          P   +PSP V P AE       PAP    P P+++ P P  + P P  S PT SPT +   
Subjt:  MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPAENRAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSPTPAGGP

Query:  VFPPIASPPSP----TGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVI
           P+ASPP P     G + P+PAPAP P    AD P A ++    A      +AG L++V+
Subjt:  VFPPIASPPSP----TGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVI

AT5G10430.1 arabinogalactan protein 41.4e-0439.38Show/hide
Query:  MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPAENRAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSPTPAGGP
        MG    +  ++ AL   S LAQAPAP P   P  A PP  AT  P P   PP     P+ +PAPATP          P A+ P+PAT+ P+ +P+PA   
Subjt:  MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPAENRAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSPTPAGGP

Query:  VFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA
           P ASPP+P G  V SP+ APGP      +PA +A+    A   G A A  +++ +LA
Subjt:  VFPPIASPPSPTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA

AT5G56330.1 alpha carbonic anhydrase 84.1e-0436.5Show/hide
Query:  MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPAENRAPSPSPAPATPAPTPSSQSPAPAAS------APSPATSAPTPSP
        M IS   +V++   ++ + ++ APAP P + P  A  P P    P+P+  PP     P+P+P    PAP P+   P PA +       P PA + P P P
Subjt:  MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPAENRAPSPSPAPATPAPTPSSQSPAPAAS------APSPATSAPTPSP

Query:  TPAGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAAD
        TPA  P  P  A  P+PT    P PAP P P G   D
Subjt:  TPAGGPVFPPIASPPSPTGVNVPSPAPAPGPEGPAAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATTTCTGGGTTTAGATTTGTTGTGATTTTTGCTTTGATGACGGCGTCCTGTTTGGCTCAGGCACCTGCGCCGGCGCCGGTGCAGGGTCCTTCACAGGCTGTACC
GCCGGCACCTGCCACGTCAGCGCCTTCTCCATCCGTCTTACCACCGGCGGAAAACAGAGCACCATCACCATCACCAGCTCCGGCGACACCCGCACCTACTCCGTCTTCTC
AGTCACCAGCACCGGCGGCATCTGCTCCATCTCCGGCAACTAGTGCGCCTACCCCAAGTCCTACTCCGGCCGGTGGACCTGTTTTCCCACCCATTGCTTCTCCGCCTTCG
CCCACCGGAGTTAACGTGCCTTCACCGGCGCCGGCGCCGGGACCGGAAGGACCGGCGGCCGATAACCCAGCTGCAGCGGCGTCGCATATCGGTGGAGCGGCGGCATTCGG
GATCGCTGTTGCTGGAACTCTGTTTTCAGTGATCTTAGCGTAG
mRNA sequenceShow/hide mRNA sequence
AAATTCAAATATTATTTCTCTGAAATACTCTGTTTCAAAAAAGAAATTAATTTCGTTTTTTCTTTCCGGTGAAGATAATGGGAATTTCTGGGTTTAGATTTGTTGTGATT
TTTGCTTTGATGACGGCGTCCTGTTTGGCTCAGGCACCTGCGCCGGCGCCGGTGCAGGGTCCTTCACAGGCTGTACCGCCGGCACCTGCCACGTCAGCGCCTTCTCCATC
CGTCTTACCACCGGCGGAAAACAGAGCACCATCACCATCACCAGCTCCGGCGACACCCGCACCTACTCCGTCTTCTCAGTCACCAGCACCGGCGGCATCTGCTCCATCTC
CGGCAACTAGTGCGCCTACCCCAAGTCCTACTCCGGCCGGTGGACCTGTTTTCCCACCCATTGCTTCTCCGCCTTCGCCCACCGGAGTTAACGTGCCTTCACCGGCGCCG
GCGCCGGGACCGGAAGGACCGGCGGCCGATAACCCAGCTGCAGCGGCGTCGCATATCGGTGGAGCGGCGGCATTCGGGATCGCTGTTGCTGGAACTCTGTTTTCAGTGAT
CTTAGCGTAGAGCTGATGGAATTCTTTTTGCATTTTTAAGCCATTATTTATTTTTAATTTACAAAATTCGTTTATGTTTTTTGTTTTTGTTTTTTTTAAATATGTTGGAC
ATGATTCATAGAGTTGTTTTGTTTTAGTAAATTTTATAGTCATTGATTATTTGAAGATTCATTGTTTCTCTGTTGATCGTATTTTATTAACCATTTTATTTATAGAGAAA
TGAATCCTTTTGTACAACGGATCGGATGGGAGATGAATAAGAGATTTTAATGTTGTTATTTTTTCTTA
Protein sequenceShow/hide protein sequence
MGISGFRFVVIFALMTASCLAQAPAPAPVQGPSQAVPPAPATSAPSPSVLPPAENRAPSPSPAPATPAPTPSSQSPAPAASAPSPATSAPTPSPTPAGGPVFPPIASPPS
PTGVNVPSPAPAPGPEGPAADNPAAAASHIGGAAAFGIAVAGTLFSVILA