; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0003808 (gene) of Chayote v1 genome

Gene IDSed0003808
OrganismSechium edule (Chayote v1)
Descriptionprotein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic
Genome locationLG11:35948254..35948943
RNA-Seq ExpressionSed0003808
SyntenySed0003808
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051071.1 fibroin heavy chain [Cucumis melo var. makuwa]2.2e-3368.42Show/hide
Query:  MKSD-STAPWKWNRAISNNFHANNSADNKFSVPNIFDPNRRNAKEPP--ALVLEAGGGAGVGCGVGLGFGLVGGIGHGG-SPWNHLRLVFGLGLGCGVGL
        MKSD S++PW       NNFH        FS    FD +RRN KE P  ALVLEAGGGAGVGCG+G GFGLVGGIGHGG SPWNHL LVFGLG GCGVGL
Subjt:  MKSD-STAPWKWNRAISNNFHANNSADNKFSVPNIFDPNRRNAKEPP--ALVLEAGGGAGVGCGVGLGFGLVGGIGHGG-SPWNHLRLVFGLGLGCGVGL

Query:  GLGIGQGIGYGVSFDSLDSYFSDHKWNPKHKPP
        GLGIGQG GYG SF+SLDSYFS    +PKHK P
Subjt:  GLGIGQGIGYGVSFDSLDSYFSDHKWNPKHKPP

KAE8022053.1 hypothetical protein FH972_007887 [Carpinus fangiana]8.5e-2555.46Show/hide
Query:  AMKSDSTAPWKWNRAISNNFHANNSADNKFSVPNIFDPNRRNAKEPPALVLEAGGGAGVGCGVGLGFGLVGGIGHGGSPWNHLRLVFGLGLGCGVGLGLG
        ++K+DS + WKWN  +SN      +   +F V   F   R  A+E   +VL  G G G+GCGVG+GFGLVGGIG+GG PWNHL++VFG G+GCGVGLG G
Subjt:  AMKSDSTAPWKWNRAISNNFHANNSADNKFSVPNIFDPNRRNAKEPPALVLEAGGGAGVGCGVGLGFGLVGGIGHGGSPWNHLRLVFGLGLGCGVGLGLG

Query:  IGQGIGYGVSFDSLDSYFS
         GQGIGYG S +SL+SY S
Subjt:  IGQGIGYGVSFDSLDSYFS

KAG6578355.1 hypothetical protein SDJN03_22803, partial [Cucurbita argyrosperma subsp. sororia]5.6e-5380.6Show/hide
Query:  MKSDSTAPWKWNRAISNNFHANNSADNKFSVPNIFDPNRRNAKEPPALVLEAGGGAGVGCGVGLGFGLVGGIGHGG-SPWNHLRLVFGLGLGCGVGLGLG
        MKSDS +PWKWN AI+NNFH   +  + FS+PNIFD NRRNAK+PP LVL+AGGGAGVGCGVGLGFGLVGGIGHGG SPWNHL LVFGLGLGCGVGLGLG
Subjt:  MKSDSTAPWKWNRAISNNFHANNSADNKFSVPNIFDPNRRNAKEPPALVLEAGGGAGVGCGVGLGFGLVGGIGHGG-SPWNHLRLVFGLGLGCGVGLGLG

Query:  IGQGIGYGVSFDSLDSYFSDHKWNPKHKPPLFHI
        IG+GIGYG+SFDSLDSYFSDHK NP+ KPPL  I
Subjt:  IGQGIGYGVSFDSLDSYFSDHKWNPKHKPPLFHI

KGN63146.1 hypothetical protein Csa_022245 [Cucumis sativus]6.5e-3373.64Show/hide
Query:  ANNSADNKFSVPNIFDPNRRNAKEPPALVLEAGGGAGVGCGVGLGFGLVGGIGH-GGSPWNHLRLVFGLGLGCGVGLGLGIGQGIGYGVSFDSLDSYFSD
        ++NS  N F     FD +RRN KE PALVLEAGGGAGVGCG+G+GFGLVGGIGH G SPWNHL LVFGLG GCGVGLGLGIGQG GYGVSF S+DSYFS 
Subjt:  ANNSADNKFSVPNIFDPNRRNAKEPPALVLEAGGGAGVGCGVGLGFGLVGGIGH-GGSPWNHLRLVFGLGLGCGVGLGLGIGQGIGYGVSFDSLDSYFSD

Query:  HKWNPKHKPP
           NPK K P
Subjt:  HKWNPKHKPP

XP_010108896.1 keratin, type II cytoskeletal 5 [Morus notabilis]5.0e-2554.4Show/hide
Query:  PFSLAMKSDSTAPWKWNRAISNNFHANNSADNKFSVPNIFDPNRRNAKEPPALVLEAGGGAGVGCGVGLGFGLVGGIGHGGSPWNHLRLVFGLGLGCGVG
        P S   K DS A W WN +  N      +++ +F V    D +R+ A+E    VL  G GAG+GCGVGLGFGLVGG G GG  WNHL+LV G+GLGCGVG
Subjt:  PFSLAMKSDSTAPWKWNRAISNNFHANNSADNKFSVPNIFDPNRRNAKEPPALVLEAGGGAGVGCGVGLGFGLVGGIGHGGSPWNHLRLVFGLGLGCGVG

Query:  LGLGIGQGIGYGVSFDSLDSYFSDH
        LG+G GQG GYG S +SL+S  SDH
Subjt:  LGLGIGQGIGYGVSFDSLDSYFSDH

TrEMBL top hitse value%identityAlignment
A0A0A0LSZ2 Uncharacterized protein3.1e-3373.64Show/hide
Query:  ANNSADNKFSVPNIFDPNRRNAKEPPALVLEAGGGAGVGCGVGLGFGLVGGIGH-GGSPWNHLRLVFGLGLGCGVGLGLGIGQGIGYGVSFDSLDSYFSD
        ++NS  N F     FD +RRN KE PALVLEAGGGAGVGCG+G+GFGLVGGIGH G SPWNHL LVFGLG GCGVGLGLGIGQG GYGVSF S+DSYFS 
Subjt:  ANNSADNKFSVPNIFDPNRRNAKEPPALVLEAGGGAGVGCGVGLGFGLVGGIGH-GGSPWNHLRLVFGLGLGCGVGLGLGIGQGIGYGVSFDSLDSYFSD

Query:  HKWNPKHKPP
           NPK K P
Subjt:  HKWNPKHKPP

A0A2P5BK94 Uncharacterized protein5.4e-2550.39Show/hide
Query:  PFSLAMKSDSTAPWKWNRAISNNFHANNSADNKFSVPNIFDPNRRNAKEPPALVLEAGGGAGVGCGVGLGFGLVGGIGHGGSPWNHLRLVFGLGLGCGVG
        P S     D+++ W WN+          + + +F V    +  +R A+E    V+  GGGAG+GCGVGLGFGLVGG+G+GG PWNHL+LVFG+G GCG+G
Subjt:  PFSLAMKSDSTAPWKWNRAISNNFHANNSADNKFSVPNIFDPNRRNAKEPPALVLEAGGGAGVGCGVGLGFGLVGGIGHGGSPWNHLRLVFGLGLGCGVG

Query:  LGLGIGQGIGYGVSFDSLD-SYFSDHKWN
        +G G GQGIGYG SF+SL+ SY S+H  N
Subjt:  LGLGIGQGIGYGVSFDSLD-SYFSDHKWN

A0A5A7UC28 Fibroin heavy chain1.1e-3368.42Show/hide
Query:  MKSD-STAPWKWNRAISNNFHANNSADNKFSVPNIFDPNRRNAKEPP--ALVLEAGGGAGVGCGVGLGFGLVGGIGHGG-SPWNHLRLVFGLGLGCGVGL
        MKSD S++PW       NNFH        FS    FD +RRN KE P  ALVLEAGGGAGVGCG+G GFGLVGGIGHGG SPWNHL LVFGLG GCGVGL
Subjt:  MKSD-STAPWKWNRAISNNFHANNSADNKFSVPNIFDPNRRNAKEPP--ALVLEAGGGAGVGCGVGLGFGLVGGIGHGG-SPWNHLRLVFGLGLGCGVGL

Query:  GLGIGQGIGYGVSFDSLDSYFSDHKWNPKHKPP
        GLGIGQG GYG SF+SLDSYFS    +PKHK P
Subjt:  GLGIGQGIGYGVSFDSLDSYFSDHKWNPKHKPP

A0A5N6QWW9 Uncharacterized protein4.1e-2555.46Show/hide
Query:  AMKSDSTAPWKWNRAISNNFHANNSADNKFSVPNIFDPNRRNAKEPPALVLEAGGGAGVGCGVGLGFGLVGGIGHGGSPWNHLRLVFGLGLGCGVGLGLG
        ++K+DS + WKWN  +SN      +   +F V   F   R  A+E   +VL  G G G+GCGVG+GFGLVGGIG+GG PWNHL++VFG G+GCGVGLG G
Subjt:  AMKSDSTAPWKWNRAISNNFHANNSADNKFSVPNIFDPNRRNAKEPPALVLEAGGGAGVGCGVGLGFGLVGGIGHGGSPWNHLRLVFGLGLGCGVGLGLG

Query:  IGQGIGYGVSFDSLDSYFS
         GQGIGYG S +SL+SY S
Subjt:  IGQGIGYGVSFDSLDSYFS

W9S8Y9 Uncharacterized protein2.4e-2554.4Show/hide
Query:  PFSLAMKSDSTAPWKWNRAISNNFHANNSADNKFSVPNIFDPNRRNAKEPPALVLEAGGGAGVGCGVGLGFGLVGGIGHGGSPWNHLRLVFGLGLGCGVG
        P S   K DS A W WN +  N      +++ +F V    D +R+ A+E    VL  G GAG+GCGVGLGFGLVGG G GG  WNHL+LV G+GLGCGVG
Subjt:  PFSLAMKSDSTAPWKWNRAISNNFHANNSADNKFSVPNIFDPNRRNAKEPPALVLEAGGGAGVGCGVGLGFGLVGGIGHGGSPWNHLRLVFGLGLGCGVG

Query:  LGLGIGQGIGYGVSFDSLDSYFSDH
        LG+G GQG GYG S +SL+S  SDH
Subjt:  LGLGIGQGIGYGVSFDSLDSYFSDH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27695.1 glycine-rich protein1.8e-0449.23Show/hide
Query:  LVLEAGGGAGVGCGVGLGFGLVGGIGHGGSPWNHLRLVFGLGLGCGVGLGLGIGQGIGYGVSFDS
        +VL    G GVG G G+G G   G G GG P N L +  G G GCGVGLGLG G G  +G  + S
Subjt:  LVLEAGGGAGVGCGVGLGFGLVGGIGHGGSPWNHLRLVFGLGLGCGVGLGLGIGQGIGYGVSFDS

AT1G27695.2 glycine-rich protein1.8e-0449.23Show/hide
Query:  LVLEAGGGAGVGCGVGLGFGLVGGIGHGGSPWNHLRLVFGLGLGCGVGLGLGIGQGIGYGVSFDS
        +VL    G GVG G G+G G   G G GG P N L +  G G GCGVGLGLG G G  +G  + S
Subjt:  LVLEAGGGAGVGCGVGLGFGLVGGIGHGGSPWNHLRLVFGLGLGCGVGLGLGIGQGIGYGVSFDS

AT1G66820.1 glycine-rich protein4.8e-1050Show/hide
Query:  GGGAGVGCGVGLGFGLVGGIGHGGSP-WNHLRLVFGLGLGCGVGLGLGIGQGIGYGVSFDSLDSYF
        G G G+GCG G+G GL GG+G G S   +H  +V G G+GCG+G G G G G+G G SFD +   F
Subjt:  GGGAGVGCGVGLGFGLVGGIGHGGSP-WNHLRLVFGLGLGCGVGLGLGIGQGIGYGVSFDSLDSYF

AT4G10330.1 glycine-rich protein9.1e-0950.77Show/hide
Query:  GAGVGCGVGLGFGLVGGIGHG-GSPWNHLRLVFGLGLGCGVGLGLGIGQGIGYGVSFDSLDSYFS
        G GVGCG G G GL+GG+G G G P     L FGLG G G G+G+G G G+G G ++D   SY++
Subjt:  GAGVGCGVGLGFGLVGGIGHG-GSPWNHLRLVFGLGLGCGVGLGLGIGQGIGYGVSFDSLDSYFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACTGCTCAAACCAACAACAACATATCTCTGTGTTTTTTATCTTCCCTTTTCTCTTGCAATGAAATCAGATTCCACTGCGCCATGGAAATGGAACAGAGCAATCTC
AAACAACTTCCACGCCAACAATAGTGCTGACAACAAATTTTCAGTCCCCAACATTTTCGACCCTAATCGCCGGAATGCAAAGGAACCGCCGGCCCTAGTTTTGGAGGCCG
GCGGCGGAGCGGGGGTGGGCTGCGGCGTCGGACTCGGCTTCGGCCTCGTCGGCGGTATTGGCCACGGCGGCTCCCCCTGGAATCACCTTCGCCTGGTTTTCGGGCTCGGT
CTCGGCTGCGGCGTCGGATTAGGGCTTGGAATTGGCCAAGGAATTGGCTACGGCGTCTCCTTCGATTCTCTCGATTCTTATTTCTCGGATCACAAATGGAACCCTAAACA
TAAGCCTCCTCTGTTTCACATTTGA
mRNA sequenceShow/hide mRNA sequence
GTTAAAGCAATTTTGGGTATTTGGAAGAAATAAAAATAGGCAGCTGAGCTTTGATTGGGATAAGATAAGAAAAGAAATGCAACTGCTCAAACCAACAACAACATATCTCT
GTGTTTTTTATCTTCCCTTTTCTCTTGCAATGAAATCAGATTCCACTGCGCCATGGAAATGGAACAGAGCAATCTCAAACAACTTCCACGCCAACAATAGTGCTGACAAC
AAATTTTCAGTCCCCAACATTTTCGACCCTAATCGCCGGAATGCAAAGGAACCGCCGGCCCTAGTTTTGGAGGCCGGCGGCGGAGCGGGGGTGGGCTGCGGCGTCGGACT
CGGCTTCGGCCTCGTCGGCGGTATTGGCCACGGCGGCTCCCCCTGGAATCACCTTCGCCTGGTTTTCGGGCTCGGTCTCGGCTGCGGCGTCGGATTAGGGCTTGGAATTG
GCCAAGGAATTGGCTACGGCGTCTCCTTCGATTCTCTCGATTCTTATTTCTCGGATCACAAATGGAACCCTAAACATAAGCCTCCTCTGTTTCACATTTGAATTTCAATT
ATTGCTTATCTCCTTGGCTTGGCTTTGTTTTTAGTTTTTAGGCATTGTTGCGATGATAAACAAGAAGAGAACTTATTTTGTTCTATAATTTTATTCATGTTATCTATTGC
ACTAGTAAATTAGTTTTGTTTACTTGATAA
Protein sequenceShow/hide protein sequence
MQLLKPTTTYLCVFYLPFSLAMKSDSTAPWKWNRAISNNFHANNSADNKFSVPNIFDPNRRNAKEPPALVLEAGGGAGVGCGVGLGFGLVGGIGHGGSPWNHLRLVFGLG
LGCGVGLGLGIGQGIGYGVSFDSLDSYFSDHKWNPKHKPPLFHI