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Sed0003810 (gene) of Chayote v1 genome

Gene IDSed0003810
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase subunit N
Genome locationLG09:32306361..32309610
RNA-Seq ExpressionSed0003810
SyntenySed0003810
Gene Ontology termsGO:0006360 - transcription by RNA polymerase I (biological process)
GO:0006366 - transcription by RNA polymerase II (biological process)
GO:0042797 - tRNA transcription by RNA polymerase III (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10
IPR020789 - RNA polymerases, subunit N, zinc binding site
IPR023580 - RNA polymerase subunit RPB10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD8056002.1 unnamed protein product [Paramecium primaurelia]1.5e-1659.38Show/hide
Query:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSV
        MIIP+RCFTCGKV+GHLW+ Y+QL+ DGV     LDRLGL RYCCR+++++HV+ I++LL++++
Subjt:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSV
CAD8091508.1 unnamed protein product [Paramecium sonneborni]3.2e-1659.38Show/hide
Query:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSV
        MIIP+RCFTCGKV+GHLW+ Y+QL+ DGV     LDRLGL RYCCR+++++HV+ I++LL++++
Subjt:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSV
CAD8154655.1 unnamed protein product [Paramecium octaurelia]1.9e-1659.38Show/hide
Query:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSV
        MIIP+RCFTCGKV+GHLW+ Y+QL+ DGV     LDRLGL RYCCR+++++HV+ I++LL++++
Subjt:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSV
XP_001443864.1 hypothetical protein [Paramecium tetraurelia strain d4-2]2.5e-1659.38Show/hide
Query:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSV
        MIIP+RCFTCGKV+GHLW  Y+QL+ DGV     LDRLGL RYCCR+++++HV+ I++LL++++
Subjt:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSV
XP_009226216.1 DNA-directed RNA polymerase N/8 kDa subunit [Gaeumannomyces tritici R3-111a-1]3.2e-1657.35Show/hide
Query:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSVDNSQ
        MIIPVRCF+CGKV G LW+RYL+L+ +G+D+   +D LGL+RYCCR+++M+HV+ IE+LL +S +  Q
Subjt:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSVDNSQ
TrEMBL top hitse value%identityAlignment
A0A0C4DT12 DNA-directed RNA polymerase N/8 kDa subunit1.6e-1657.35Show/hide
Query:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSVDNSQ
        MIIPVRCF+CGKV G LW+RYL+L+ +G+D+   +D LGL+RYCCR+++M+HV+ IE+LL +S +  Q
Subjt:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSVDNSQ
A0A5J4W8X6 DNA-directed RNA polymerases I, II, and III subunit RPABC52.0e-1658.73Show/hide
Query:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHS
        MIIPVRCFTCG+VLGHLW +YL+L+  G++ R  LD+LGL+RYCCR ++++HV+ I++LL ++
Subjt:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHS
A0D0A0 Uncharacterized protein1.2e-1659.38Show/hide
Query:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSV
        MIIP+RCFTCGKV+GHLW  Y+QL+ DGV     LDRLGL RYCCR+++++HV+ I++LL++++
Subjt:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSV
A0DC00 Uncharacterized protein2.0e-1659.38Show/hide
Query:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSV
        MIIP+RCFTCGKV+GHLW  Y+QL+ DGV     LDRLGL RYCCR+++++HV+ I++LL++++
Subjt:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSV
J3P9A6 DNA-directed RNA polymerase N/8 kDa subunit1.6e-1657.35Show/hide
Query:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSVDNSQ
        MIIPVRCF+CGKV G LW+RYL+L+ +G+D+   +D LGL+RYCCR+++M+HV+ IE+LL +S +  Q
Subjt:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSVDNSQ
SwissProt top hitse value%identityAlignment
A8Y1E9 DNA-directed RNA polymerases I, II, and III subunit RPABC51.7e-1556.45Show/hide
Query:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDH
        MIIP+RCFTCGKV+G  W+ YL  +     E   LD LGLRRYCCR++L++HV+ IE+LL++
Subjt:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDH
Q32P78 DNA-directed RNA polymerases I, II, and III subunit RPABC51.7e-1555.56Show/hide
Query:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHS
        MIIPVRCFTCGK++G+ W+ YL L+     E   LD LGL+RYCCR++L++HV+ IE+LL+++
Subjt:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHS
Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC51.7e-1556.34Show/hide
Query:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSV----DNS
        MIIPVRCFTCGKV+G+ WD YL L+     E   LD L L RYCCR++LM+HV+ IE+LL+++     DNS
Subjt:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSV----DNS
Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 101.7e-1556.34Show/hide
Query:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSV----DNS
        MIIPVRCFTCGKV+G+ WD+YL L+     E   LD L L RYCCR++LM+HV+ IE+LL+++     DNS
Subjt:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSV----DNS
Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein2.6e-1658.73Show/hide
Query:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHS
        MI+PVRCFTCGKV+G+ WD YL+L+     E   LD LGL RYCCR++LM+HV+ IE+LL+++
Subjt:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHS
Arabidopsis top hitse value%identityAlignment
AT1G11475.1 RNA polymerases N / 8 kDa subunit1.2e-1656.34Show/hide
Query:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSV----DNS
        MIIPVRCFTCGKV+G+ WD+YL L+     E   LD L L RYCCR++LM+HV+ IE+LL+++     DNS
Subjt:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSV----DNS
AT1G61700.1 RNA polymerases N / 8 kDa subunit1.8e-1758.73Show/hide
Query:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHS
        MI+PVRCFTCGKV+G+ WD YL+L+     E   LD LGL RYCCR++LM+HV+ IE+LL+++
Subjt:  MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAATCCCAGTTCGTTGCTTTACTTGTGGCAAGGTTCTCGGACATCTGTGGGATAGATATCTTCAATTAATTCTAGATGGGGTGGATGAACGTGTGGTGCTAGATCG
TCTAGGCCTAAGACGATATTGCTGTAGGCAGATTCTCATGTCACATGTCAATAACATTGAAAGGCTTCTTGATCATAGTGTCGACAACTCACAAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATAATCCCAGTTCGTTGCTTTACTTGTGGCAAGGTTCTCGGACATCTGTGGGATAGATATCTTCAATTAATTCTAGATGGGGTGGATGAACGTGTGGTGCTAGATCG
TCTAGGCCTAAGACGATATTGCTGTAGGCAGATTCTCATGTCACATGTCAATAACATTGAAAGGCTTCTTGATCATAGTGTCGACAACTCACAAATTTAA
Protein sequenceShow/hide protein sequence
MIIPVRCFTCGKVLGHLWDRYLQLILDGVDERVVLDRLGLRRYCCRQILMSHVNNIERLLDHSVDNSQI