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Sed0003828 (gene) of Chayote v1 genome

Gene IDSed0003828
OrganismSechium edule (Chayote v1)
DescriptionPSII 6.1 kDa protein
Genome locationLG08:31197880..31199372
RNA-Seq ExpressionSed0003828
SyntenySed0003828
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008456049.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo]2.8e-4879.7Show/hide
Query:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLL HS ++LKGS K+LPS TMAA RLP LQKM  G IKC++EEK EGK S+ESM+ G+VAAV  AA+AAAGPAVALVDER+STEGTGLPFGLSNNL
Subjt:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL
        LGWILAG+FGLIWALYFVY SSL+EDEDSGLSL
Subjt:  LGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL

XP_022937622.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata]1.3e-5384.21Show/hide
Query:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSG+ LKGSPK+LP P MAAHRLP++QKM KGGIKC+LEEK EGK SKES+ISG+VAA+ T  VA AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL
        LGWILAG+FG IWALYFVY SSLEEDEDSGLSL
Subjt:  LGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL

XP_022966002.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita maxima]1.4e-5284.96Show/hide
Query:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSG+ LKGSPK+LP P MAAHRL ++QK  KGGIKCRLEEK E KSSKESMISG+VAAV T  VA AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL
        LGWILAG+FG IWALYFVY SSLEEDEDSGLSL
Subjt:  LGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL

XP_023521133.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo]9.8e-5485.71Show/hide
Query:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSG+ LKGSPK+LP P MAAHRL ++QKM KGGIKCRLEEK EGK SKESMISG+VAAV T  VA AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL
        LGWILAG+FG IWALYFVY SSLEEDEDSGLSL
Subjt:  LGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL

XP_038890119.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]2.4e-5283.46Show/hide
Query:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHS ++LKGS K+LPSP +AAHRLPMLQKM KGGIKCR+EEK EGK S+ES++SG++AAV  AA+AAAGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL
        LGWILAGVF LIWALYFVY SSL+EDEDSGLSL
Subjt:  LGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0LJA2 PSII 6.1 kDa protein5.1e-4880.6Show/hide
Query:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKS-SKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLL HS ++LKGS K+L SPTMAAHRLP LQKM KGGIKC +EEK EGK  S+ESM+ G+V AV  AA+AAAGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKS-SKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL
        LLGWILA VF LIWALYFVY SSL+EDEDSGLSL
Subjt:  LLGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL

A0A1S3C2B0 PSII 6.1 kDa protein1.3e-4879.7Show/hide
Query:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLL HS ++LKGS K+LPS TMAA RLP LQKM  G IKC++EEK EGK S+ESM+ G+VAAV  AA+AAAGPAVALVDER+STEGTGLPFGLSNNL
Subjt:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL
        LGWILAG+FGLIWALYFVY SSL+EDEDSGLSL
Subjt:  LGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL

A0A6J1CNY5 PSII 6.1 kDa protein2.8e-4678.2Show/hide
Query:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSG+ LKGSPK+ P P MAA RL M+ KM KGGIKC++EE+ E KSS ES +S ++AAVV A VAAAGPA ALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL
        L WILAGVF LIWALYFVY SSL+EDEDSGLSL
Subjt:  LGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL

A0A6J1FBR0 PSII 6.1 kDa protein6.2e-5484.21Show/hide
Query:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSG+ LKGSPK+LP P MAAHRLP++QKM KGGIKC+LEEK EGK SKES+ISG+VAA+ T  VA AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL
        LGWILAG+FG IWALYFVY SSLEEDEDSGLSL
Subjt:  LGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL

A0A6J1HLU7 PSII 6.1 kDa protein6.9e-5384.96Show/hide
Query:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSG+ LKGSPK+LP P MAAHRL ++QK  KGGIKCRLEEK E KSSKESMISG+VAAV T  VA AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL
        LGWILAG+FG IWALYFVY SSLEEDEDSGLSL
Subjt:  LGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic1.6e-2755.47Show/hide
Query:  MASTLLSHSGVVLKGSPKILPSPTMAAHR----LPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGL
        MAS   S S  V    P +L  PT+A       LP + K  KGG++C +E K    S   + +S +  A +TA +  + PA+ALVDER+STEGTGLPFGL
Subjt:  MASTLLSHSGVVLKGSPKILPSPTMAAHR----LPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGL

Query:  SNNLLGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL
        SNNLLGWIL GVFGLIW  +FVYTSSLEEDE+SGLSL
Subjt:  SNNLLGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic7.6e-2550.75Show/hide
Query:  ASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAA--AGPAVALVDERLSTEGTGLPFGLSNN
        +++L++ + +V      +  SP +    LP + K +K  + C +E K     +  +      A+++ AA AA  + PA+ALVDER+STEGTGLPFGLSNN
Subjt:  ASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAA--AGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL
        LLGWIL GVFGLIWALYFVY S LEEDE+SGLSL
Subjt:  LLGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic2.5e-2052.48Show/hide
Query:  LPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYTSSLEEDEDS
        LP ++      ++C   +++   ++  + + G+ A+++ A  A A PA+ALVDER+STEGTGL  GLSNNLLGWIL GVFGLIW+LY +YTS LEEDE+S
Subjt:  LPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYTSSLEEDEDS

Query:  G
        G
Subjt:  G

Q9SPI9 Photosystem II reaction center W protein, chloroplastic4.8e-1148.75Show/hide
Query:  SMISGSVAAVVT-AAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYTSSLE--EDEDSGLSL
        S ++  VA + T  A  AA PA ALVDER++ +GTG PFG+++ +LGW+L GVFG +WA++F+    L   ED D GL L
Subjt:  SMISGSVAAVVT-AAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFVYTSSLE--EDEDSGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W1.2e-2855.47Show/hide
Query:  MASTLLSHSGVVLKGSPKILPSPTMAAHR----LPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGL
        MAS   S S  V    P +L  PT+A       LP + K  KGG++C +E K    S   + +S +  A +TA +  + PA+ALVDER+STEGTGLPFGL
Subjt:  MASTLLSHSGVVLKGSPKILPSPTMAAHR----LPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGL

Query:  SNNLLGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL
        SNNLLGWIL GVFGLIW  +FVYTSSLEEDE+SGLSL
Subjt:  SNNLLGWILAGVFGLIWALYFVYTSSLEEDEDSGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACTCTGCTTTCTCACTCCGGGGTTGTACTCAAAGGATCACCCAAGATTCTTCCATCGCCAACAATGGCAGCTCACAGGTTGCCTATGTTGCAAAAGATGAA
TAAGGGAGGGATAAAGTGCAGGTTGGAAGAGAAGTCAGAAGGAAAAAGCTCAAAAGAAAGTATGATTTCAGGGTCGGTGGCGGCCGTGGTGACGGCTGCGGTGGCAGCAG
CGGGTCCGGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGTACAGGGCTGCCTTTTGGTTTAAGTAACAACCTTTTGGGGTGGATTCTTGCTGGGGTGTTTGGT
TTAATTTGGGCTCTCTATTTTGTTTATACTTCATCCTTGGAGGAGGATGAAGATTCTGGTTTGTCACTCTGA
mRNA sequenceShow/hide mRNA sequence
GTAATATCGACCTAACAAGTAAATTTACAATCTCTTCAATTTATGATTTCCCATTCAATCTAAAGTGGGCACAACTTAACTTATTTGGATAATATAAGGTTTTTCTTAGT
ACATATACCAAGAAAGGGTTCTATCTTCTGCATTCTTTGTTCTCTCTCAACTAAACAATCAGCCTAAAAAACCTCAACAACCATCATGAACAATGACACAAATTCCAGTG
TATGGTAGGGACAAGTGGAGAGCAGGGATTGGATAAAGAGGATGATAATAAGGAACTGTTTGGCTGTTTTCATATCCAAATTGTGTGGTGCATAAAAAACAACACTTTTC
ATCACCCATCACAACTTAAAAACATCAGAGAAAAGAAAGATCTCTGGATCTGAGTGTTTCAGCCAAACAAAGCATTTCCCATTCCCATTTTTAGCAGGTTCTTTTGGCCG
GAAAAAATGGCTTCCACTCTGCTTTCTCACTCCGGGGTTGTACTCAAAGGATCACCCAAGATTCTTCCATCGCCAACAATGGCAGCTCACAGGTTGCCTATGTTGCAAAA
GATGAATAAGGGAGGGATAAAGTGCAGGTTGGAAGAGAAGTCAGAAGGAAAAAGCTCAAAAGAAAGTATGATTTCAGGGTCGGTGGCGGCCGTGGTGACGGCTGCGGTGG
CAGCAGCGGGTCCGGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGTACAGGGCTGCCTTTTGGTTTAAGTAACAACCTTTTGGGGTGGATTCTTGCTGGGGTG
TTTGGTTTAATTTGGGCTCTCTATTTTGTTTATACTTCATCCTTGGAGGAGGATGAAGATTCTGGTTTGTCACTCTGAATCAATCACAACATTTCTTGATAAATAAAATG
GGCTTTGTGTTTAAATGGTGAGCAAACAAGCATGAAGCATTGCTGAATAATAAGATACTTTCCTTTCTTTAGTTTGTTATTCAAATTCAACCTCCTTGAATATGGAAAAA
CAAATACTAGAAAAGTCAAAGAAGAGAGGAGTTAAGAG
Protein sequenceShow/hide protein sequence
MASTLLSHSGVVLKGSPKILPSPTMAAHRLPMLQKMNKGGIKCRLEEKSEGKSSKESMISGSVAAVVTAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFG
LIWALYFVYTSSLEEDEDSGLSL