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Sed0003830 (gene) of Chayote v1 genome

Gene IDSed0003830
OrganismSechium edule (Chayote v1)
DescriptionRPM1-interacting protein 4-like
Genome locationLG03:8619987..8624233
RNA-Seq ExpressionSed0003830
SyntenySed0003830
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596757.1 Protein NOI4, partial [Cucurbita argyrosperma subsp. sororia]4.1e-2988.89Show/hide
Query:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSP
        MSEKGQPLPKFGEWDVNNP+SAEGFTVIFNKARDEKK+GGQ ESPG AP+AK AADP KPQAKKWFCC QSP
Subjt:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSP

XP_004148258.1 protein NOI4 [Cucumis sativus]1.3e-3290.79Show/hide
Query:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSPPTQS
        MSEKGQPLPKFGEWDVNNP+SAEGFTVIFNKARDEKKTGGQ ESPG+AP+AK+ ADPGKPQAKKWFCC QSPPTQS
Subjt:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSPPTQS

XP_008449047.1 PREDICTED: RPM1-interacting protein 4-like [Cucumis melo]4.6e-3392.11Show/hide
Query:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSPPTQS
        MSEKGQPLPKFGEWDVNNP+SAEGFTVIFNKARDEKKTGGQ ESPG+APQAK+ ADPGKPQAKKWFCC QSPPTQS
Subjt:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSPPTQS

XP_022950564.1 RPM1-interacting protein 4-like [Cucurbita moschata]1.0e-3285.37Show/hide
Query:  TSPFSLFLDFMSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSP
        +SPF  FL+FMSEKGQPLPKFGEWDVNNP+SAEGFTVIFNKARDEKK+GGQ ESPG AP+AK AADP KPQAKKWFCC QSP
Subjt:  TSPFSLFLDFMSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSP

XP_038905925.1 protein NOI4-like [Benincasa hispida]9.7e-3189.47Show/hide
Query:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSPPTQS
        MSEKGQPLPKFGEWDVNNP+SAEGFTVIFNKARDEKKTGGQ ESPG+APQAK AADPGKPQAKKWFCC + PPT+S
Subjt:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSPPTQS

TrEMBL top hitse value%identityAlignment
A0A0A0L7F7 AvrRpt-cleavage domain-containing protein6.5e-3390.79Show/hide
Query:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSPPTQS
        MSEKGQPLPKFGEWDVNNP+SAEGFTVIFNKARDEKKTGGQ ESPG+AP+AK+ ADPGKPQAKKWFCC QSPPTQS
Subjt:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSPPTQS

A0A1S3BL66 RPM1-interacting protein 4-like2.2e-3392.11Show/hide
Query:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSPPTQS
        MSEKGQPLPKFGEWDVNNP+SAEGFTVIFNKARDEKKTGGQ ESPG+APQAK+ ADPGKPQAKKWFCC QSPPTQS
Subjt:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSPPTQS

A0A6J1CR09 RPM1-interacting protein 4-like isoform X11.7e-2884.21Show/hide
Query:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSPPTQS
        MSEKGQPLPKFGEWDVNNP+SAEGFTVIFNKARDEKKTGGQSES  +  Q K  AD GKPQ+KKWFCC QSPPTQS
Subjt:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSPPTQS

A0A6J1GG65 RPM1-interacting protein 4-like5.0e-3385.37Show/hide
Query:  TSPFSLFLDFMSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSP
        +SPF  FL+FMSEKGQPLPKFGEWDVNNP+SAEGFTVIFNKARDEKK+GGQ ESPG AP+AK AADP KPQAKKWFCC QSP
Subjt:  TSPFSLFLDFMSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSP

E9RJK2 Putative nitrate-induced NOI protein8.3e-2877.22Show/hide
Query:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRA---PQAKSAADPGKPQAKKWFCCFQSPPTQS
        MSEKG+PLPKFGEWDVN+P+SAEGFTVIFNKARDEKKTGG +ESPG+    PQ+K A+DPGKPQ+KKWFCC Q+PP +S
Subjt:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRA---PQAKSAADPGKPQAKKWFCCFQSPPTQS

SwissProt top hitse value%identityAlignment
O22633 Protein NOI45.3e-2465.82Show/hide
Query:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQA---KSAADPGKPQAKKWFCCFQSPPTQS
        MS+KG+PLPKFGEWDVN+P+SAEGFTVIFNKARDEKKTGG+  SPG++ +        DP KPQ KKW CC Q+P   S
Subjt:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQA---KSAADPGKPQAKKWFCCFQSPPTQS

Q8GYN5 RPM1-interacting protein 47.5e-1042.86Show/hide
Query:  PFSLFLDFMSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCF
        P +L  D   EK   +PKFG+WD NNPSSA+G+T IFNK R+E+ +G       R P  +S+ +P    +    CCF
Subjt:  PFSLFLDFMSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCF

Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein1.3e-2063.89Show/hide
Query:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGR-APQAKSAADPGKPQAKKWFCCFQS
        M++KG+PLPKFGEWDVN+PSSAEGFTVIFNKAR+EKK GG+S+SPG+  P      +  +  AKKWFCC ++
Subjt:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGR-APQAKSAADPGKPQAKKWFCCFQS

AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein3.1e-1967.16Show/hide
Query:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQA---KSAADPGKPQAKK
        MS+KG+PLPKFGEWDVN+P+SAEGFTVIFNKARDEKKTGG+  SPG++ +        DP KPQ  K
Subjt:  MSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQA---KSAADPGKPQAKK

AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein3.4e-1856.63Show/hide
Query:  SFTIEETSPFSLFLDFMSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQA---KSAADPGKPQAKK
        SF   E   +    D+  +KG+PLPKFGEWDVN+P+SAEGFTVIFNKARDEKKTGG+  SPG++ +        DP KPQ  K
Subjt:  SFTIEETSPFSLFLDFMSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQA---KSAADPGKPQAKK

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein4.2e-2456.84Show/hide
Query:  SFTIEETSPFSLFLDFMSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQA---KSAADPGKPQAKKWFCCFQSPPTQS
        SF   E   +    D+  +KG+PLPKFGEWDVN+P+SAEGFTVIFNKARDEKKTGG+  SPG++ +        DP KPQ KKW CC Q+P   S
Subjt:  SFTIEETSPFSLFLDFMSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQA---KSAADPGKPQAKKWFCCFQSPPTQS

AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein8.8e-1456.76Show/hide
Query:  KGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKT---GGQSESPGRAPQAKSAADPG------KPQAK-KWFC
        KG+PLPKFGEWDVNNP+SAEGFTVIF+KA DEKKT    G   +   +PQ    +D         P+AK KWFC
Subjt:  KGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKT---GGQSESPGRAPQAKSAADPG------KPQAK-KWFC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTATTATAAATTGTAGGAAGGCGAAAGAAAAGGCAGCATTCTTCGAGTCTTCGTTTACTATCGAAGAAACTTCTCCTTTTTCTCTCTTTCTCGATTTCATGTCGGA
GAAGGGTCAGCCACTACCGAAGTTTGGGGAATGGGATGTCAATAATCCTTCTTCAGCAGAGGGCTTCACTGTGATCTTTAATAAGGCAAGAGATGAGAAGAAAACCGGTG
GCCAATCTGAATCTCCTGGAAGGGCGCCTCAGGCTAAATCTGCAGCAGATCCTGGCAAACCTCAGGCTAAGAAATGGTTTTGCTGCTTTCAGAGCCCACCTACACAATCT
TGA
mRNA sequenceShow/hide mRNA sequence
GTTCTATTAATAAAATATAATAATAAAATGTTTATTATAAATTGTAGGAAGGCGAAAGAAAAGGCAGCATTCTTCGAGTCTTCGTTTACTATCGAAGAAACTTCTCCTTT
TTCTCTCTTTCTCGATTTCATGTCGGAGAAGGGTCAGCCACTACCGAAGTTTGGGGAATGGGATGTCAATAATCCTTCTTCAGCAGAGGGCTTCACTGTGATCTTTAATA
AGGCAAGAGATGAGAAGAAAACCGGTGGCCAATCTGAATCTCCTGGAAGGGCGCCTCAGGCTAAATCTGCAGCAGATCCTGGCAAACCTCAGGCTAAGAAATGGTTTTGC
TGCTTTCAGAGCCCACCTACACAATCTTGATGGTATTGCCTGTCTGTAGATAACCGTAACTCCCCGCGATCGTCTCCACCGGTGTCTGTAGAAGATGATGAAGATGTTAT
CAGCTTGCTATAGTATTTACTTCATAGTCTTGAGTCATGAGGAAAAAGTTGAAGAATTCTACGTCTTTATTTATGGTGCTGATGTGGTAAGTTGTAGTAAACGAAGCTGA
GCTATGTATCTCATTTGTTTCTGCTTCCTTTTTTTGTTGTTTTGAAGAACATTTTGCTCTTTACATCTGATATGGAGTCTCTATTATTGTTTGTGAAATTTGTATGAGCC
TGGTGGATTTTGTGTGTACGAAAATGATGCATGTAGTGTTATGTACATTAAATTCATACACATCCTAGTATAGATAAACTAGAATCTATTGCCATGAGCATTCGAAAGAA
CTAGAGTTTAATAATGGTAGCGTAGTAGTTAAGATGTGAC
Protein sequenceShow/hide protein sequence
MFIINCRKAKEKAAFFESSFTIEETSPFSLFLDFMSEKGQPLPKFGEWDVNNPSSAEGFTVIFNKARDEKKTGGQSESPGRAPQAKSAADPGKPQAKKWFCCFQSPPTQS